Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0021330 | OGI:08071890 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:26172369-26174010 | ||||||||
| Gene Symbol | PGIP6, Ospgip6, pgip6, OsPGIP6 | ||||||||||
| DNA seq | acgatttatcatccatttatctattatgacctttcaaattgggccaagtacccaagcgcacaaatatgaaaccacaacctctcatacaagatctttagcatttcttatgcttttgtcacttgtacaatacaaactttaaagtagaactatcaagtaaatcactagcaaaaaaggttaaaaatataaagaagagaaaggcaggaaagagaaaacattcttcttttccttaaccacttcctctttctctcacacacacacacactaggcacaaattctcatcttgttctatatgtacccaagcccaaaactatagcccaagtgagttaatacttaagcagcaactaattaaccatatatacgaacacgtaagttcgttgcatcgtacacggtacatcgcacaccacacgttcgatcaggctctcccgatcgatcggacggctctggttggggcacgtcacgtgcacttgccgagcgggccgccgcagaggcagctgttgctggcgaaggaggcggcgtcgaggtggtcgaacggcgggccggcggggatggagccgcacagccggttgtggctgaggtcgaggtggccgacgtacgctgccgccgacagcgacctcggcacggcgccggtgagcctgttccgggacaggtcgagcaccatgaagtaggactcggcggtgaacacgtcggggatggcgccctcgacggcgttccggctcaggttcaggatgcccagccccttgttctgcagcaggctcgccgggatccggccggagacccggttgccgccgaggtacagggaggtgagcacgtgggcgccgcccaggctgtccgggatcccgccggtgaggccgttctcggcgaggtcgaggtcggcgagccgggtcagggagccgaccgacgttgggatggcgccggtgagcttgttccggccgagcagcgcgcggctgagcatggtgaggtcgcccacgtcgtccgggatcccgccggtgagctggttgttggtgaggtcgaggtgcttcagcgacgcgagcgaggtgatggagcttgggatttcgccggcgatgaggttgtcggcgaggttgagcacggtgaggcgggagaggctgccgatggagcgcgggatctcgccggtgaggcggttgccggggagctcgaggatgcggaggtaagggagggcggtggcgacgcacggcgggatgggcccggagatctgcttccagtcggcgaggatgagggaggagaggcggccgaggcggcacaccgcgtcggagatgtagccggacatgacgccggaggccgggcggccggcgggcgccatgacggggtcgtcggcctcgccgcggagggtgaggtcggcgacgcggccggtggtgggatcgcagctcacgccgtaccagctggtgcagcagtcggtgcccgtccacgacgagaacaccccgaggtgcgcctccgacagcgccgcccggatcgccagcagcgcgtcccggtcgcccgcggagcacgcggcggcggaggcggacgcgaccacggcgagcgccgcgagcgcggcgaggaggagcggcggcgcggcggggcttggagcgggagatgatgccatcgtctcgtctcggctcgcgtgggcactgcactgcagagtgagagt
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| CDS seq | atggcatcatctcccgctccaagccccgccgcgccgccgctcctcctcgccgcgctcgcggcgctcgccgtggtcgcgtccgcctccgccgccgcgtgctccgcgggcgaccgggacgcgctgctggcgatccgggcggcgctgtcggaggcgcacctcggggtgttctcgtcgtggacgggcaccgactgctgcaccagctggtacggcgtgagctgcgatcccaccaccggccgcgtcgccgacctcaccctccgcggcgaggccgacgaccccgtcatggcgcccgccggccgcccggcctccggcgtcatgtccggctacatctccgacgcggtgtgccgcctcggccgcctctcctccctcatcctcgccgactggaagcagatctccgggcccatcccgccgtgcgtcgccaccgccctcccttacctccgcatcctcgagctccccggcaaccgcctcaccggcgagatcccgcgctccatcggcagcctctcccgcctcaccgtgctcaacctcgccgacaacctcatcgccggcgaaatcccaagctccatcacctcgctcgcgtcgctgaagcacctcgacctcaccaacaaccagctcaccggcgggatcccggacgacgtgggcgacctcaccatgctcagccgcgcgctgctcggccggaacaagctcaccggcgccatcccaacgtcggtcggctccctgacccggctcgccgacctcgacctcgccgagaacggcctcaccggcgggatcccggacagcctgggcggcgcccacgtgctcacctccctgtacctcggcggcaaccgggtctccggccggatcccggcgagcctgctgcagaacaaggggctgggcatcctgaacctgagccggaacgccgtcgagggcgccatccccgacgtgttcaccgccgagtcctacttcatggtgctcgacctgtcccggaacaggctcaccggcgccgtgccgaggtcgctgtcggcggcagcgtacgtcggccacctcgacctcagccacaaccggctgtgcggctccatccccgccggcccgccgttcgaccacctcgacgccgcctccttcgccagcaacagctgcctctgcggcggcccgctcggcaagtgcacgtga
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| Protein seq | MASSPAPSPAAPPLLLAALAALAVVASASAAACSAGDRDALLAIRAALSEAHLGVFSSWTGTDCCTSWYGVSCDPTTGRVADLTLRGEADDPVMAPAGRPASGVMSGYISDAVCRLGRLSSLILADWKQISGPIPPCVATALPYLRILELPGNRLTGEIPRSIGSLSRLTVLNLADNLIAGEIPSSITSLASLKHLDLTNNQLTGGIPDDVGDLTMLSRALLGRNKLTGAIPTSVGSLTRLADLDLAENGLTGGIPDSLGGAHVLTSLYLGGNRVSGRIPASLLQNKGLGILNLSRNAVEGAIPDVFTAESYFMVLDLSRNRLTGAVPRSLSAAAYVGHLDLSHNRLCGSIPAGPPFDHLDAASFASNSCLCGGPLGKCT |
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| Function | DNA damage-repair/toleration protein DRT100 [UniProtKB/Swiss-Prot:Q00874] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0021330 | OsKeNa_08g0021330.01 | Chr08 | 26172369 | 26174010 | - | NAM | ||
| CDS seq | atggcatcatctcccgctccaagccccgccgcgccgccgctcctcctcgccgcgctcgcggcgctcgccgtggtcgcgtccgcctccgccgccgcgtgctccgcgggcgaccgggacgcgctgctggcgatccgggcggcgctgtcggaggcgcacctcggggtgttctcgtcgtggacgggcaccgactgctgcaccagctggtacggcgtgagctgcgatcccaccaccggccgcgtcgccgacctcaccctccgcggcgaggccgacgaccccgtcatggcgcccgccggccgcccggcctccggcgtcatgtccggctacatctccgacgcggtgtgccgcctcggccgcctctcctccctcatcctcgccgactggaagcagatctccgggcccatcccgccgtgcgtcgccaccgccctcccttacctccgcatcctcgagctccccggcaaccgcctcaccggcgagatcccgcgctccatcggcagcctctcccgcctcaccgtgctcaacctcgccgacaacctcatcgccggcgaaatcccaagctccatcacctcgctcgcgtcgctgaagcacctcgacctcaccaacaaccagctcaccggcgggatcccggacgacgtgggcgacctcaccatgctcagccgcgcgctgctcggccggaacaagctcaccggcgccatcccaacgtcggtcggctccctgacccggctcgccgacctcgacctcgccgagaacggcctcaccggcgggatcccggacagcctgggcggcgcccacgtgctcacctccctgtacctcggcggcaaccgggtctccggccggatcccggcgagcctgctgcagaacaaggggctgggcatcctgaacctgagccggaacgccgtcgagggcgccatccccgacgtgttcaccgccgagtcctacttcatggtgctcgacctgtcccggaacaggctcaccggcgccgtgccgaggtcgctgtcggcggcagcgtacgtcggccacctcgacctcagccacaaccggctgtgcggctccatccccgccggcccgccgttcgaccacctcgacgccgcctccttcgccagcaacagctgcctctgcggcggcccgctcggcaagtgcacgtga
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| Protein seq | MASSPAPSPAAPPLLLAALAALAVVASASAAACSAGDRDALLAIRAALSEAHLGVFSSWTGTDCCTSWYGVSCDPTTGRVADLTLRGEADDPVMAPAGRPASGVMSGYISDAVCRLGRLSSLILADWKQISGPIPPCVATALPYLRILELPGNRLTGEIPRSIGSLSRLTVLNLADNLIAGEIPSSITSLASLKHLDLTNNQLTGGIPDDVGDLTMLSRALLGRNKLTGAIPTSVGSLTRLADLDLAENGLTGGIPDSLGGAHVLTSLYLGGNRVSGRIPASLLQNKGLGILNLSRNAVEGAIPDVFTAESYFMVLDLSRNRLTGAVPRSLSAAAYVGHLDLSHNRLCGSIPAGPPFDHLDAASFASNSCLCGGPLGKCT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.417869 | 0.0 | 1.856148 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0505900 | RBH | 0.156302 | 0.320053 | 3.807561 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39550 | RBH | 0.098687 | 0.200980 | 0.917542 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0505900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021430 | RBH | 0.231395 | 1.598132 | 6.364022 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0014960 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021220 | RBH | 0.384725 | 1.357772 | 8.057852 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021410 | RBH | 0.0 | 0.053885 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021270 | RBH | 2.196327 | 7.279378 | 7.010807 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0398700 | RBH | 4.33954 | 2.265702 | 13.7193865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021160 | RBH | 0.056918 | 0.195521 | 1.014510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0419000 | RBH | 3.4560545 | 0.1135245 | 9.728507 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020490 | RBH | 0.101649 | 0.074545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020780 | RBH | 0.110613 | 7.322106 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020600 | RBH | 1.441700 | 3.813115 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021450 | RBH | 0.212619 | 0.072694 | 0.486292 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020820 | RBH | 0.0 | 1.292623 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020980 | RBH | 0.0 | 3.115433 | 1.400090 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021140 | RBH | 0.0 | 0.0 | 3.321813 |
