Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0020660 | OGI:08070600 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:25641479-25644713 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactgaaaaaataacatttctttgctgaaatgcataatgttattacattgtcaaaactgactggaaaccagaacaacaaagtatttgagtttcaggaactaaatcaatacaaagaatatgccctttggacatctcagggctaagaaaaaatgttgttgtctcgtaaccattggagcacaagcagtggtcagtccgtcctatgcgagcatgcagcgacaaacatttgcgatccccttctgtatcctccaaatcaacacaataaactggctgcactgcaagttcgagagagcaaactttcatcggaatttcgtcaacaatcaacatcaagttttcaatgcaaacgaagtaaagagtttgtggtagtatagaatttgaactagcatagatagaaattgataccaaaccaaacgttcatttgaaactattgaagttgcaaaaattttggtaggacaaaaattcactacaatccaaacaagcccaaaatttgctgaaacaatgttgaggtatccaattataatttcacttgctggcatgtggcatcgtaagtccagatttcacaattcacatcagacaagcattctaagagcctattcgttttagagaaatttcaacacacagaaatacaaaatgtagaggaataggaatacatgcacacttcaatccataggaatttttccatgaggttcgtgtggatagaaaatttccttgttctctctacaacttgtaggaaaggaaaattttatttgatttttctatatatacattcctatgaaccaaatgacattcacaggaattaatccttaggaatccaaatcatttgaaattcctcaaaaatgaataggccctaattgtgactaatgattgtttttcttctgaatcttcactattttacacatagttgttgacataattttactcccaaagtccataacatttttctttctcaagatttgaagaagaaagccacagcttaccttagcctccggcctacgagcacaagatgaacttgccggagcacatggtggcggcggcgacggcgagcaggcaggcggcgacgatgttctggtagcaccaccggagcgggccccacgcaccggcgccctcgacgctggcgcacttggccctcgtcaccccgtactgcggctccttggacaggtcgaacgccgcacccttcatccggagctcctgcacgcaccgcgccagcgcgcgcgcgtcgccgcgctcccggcgcagccgccgcgacgcgcgccagtaggcgcagacccggagctgcacggccgccgcgagcgcgagggacgcgaccagcgacagggacgacggcacccaccacctgctgcaacaggcggcgcgctgctccgcgggcggcgagacggcggacgcggacacggaggcggcgaagaggagcgcgagggagaggccgtggaaggcgaggaaggccgcgcagaggtagaacgcgtcgcggcgcgccgcgtccatgagcgcctcgagcgcgcacgcgcggcggccgaggcgggactcctcccgctgccacagcttcagcagcagcaggtgccccgcgctcccggcgatctcgccaagcggatggctcccggaagactccgcctccgccgccttgtcaagaaacgcggcgacctccgcgttcccgccatcaggacaagccccgtcgccggtgaccgggatctccacgatgtggacggcgttcttgatcggctgctcctccatagatcagaatccagaagctcccaagaagtcaagaagcgatggttctggaaggaaagcggggattcgtttggaaagcttcgagttgatctgagattggaagccgcgagatcggggagaagaggagatggaaggggagaagcgatgatttgcgtggggcgcgcgtggattaagggaaggtttgggtccaacggtcgagtgctttaggaggcaggtaacggtcggattttggaccggggtggtaatttcgtaggatggtaggggcccttttgcatattactaatggtcgtttaacacagcgatgataatgggctgtttctggacgttatcatccgtaaaagctgatgatatggtctagcatgtaatgtgccgtgatgcgattatgcgaacatgcgtgaaatgtgatactaatggtcttctgtatgtattgctaccaatttgccgtaccaatattttcgtaatttaaatggtatgtttggactggaactaccgttgagacggtacaccgtcccatagtttttctcttattgataatgaccatgctatatttggcatcaatctagaatattattattcactgtacttttacatttggcttcatattgatagtaatccaaatataatcaaatgcaattttaccaaaaaaaaaacatgatttaccaaaggttaggtaaattttggtattacttaaaaaaattggtaagataacaatccaaatagaccccctaagttcattggcattttggctggtacagttgttgtaggttggtttgtatttgttaacgctacagaattattagaacaaattcgaccaactaatccgcatatctatagtggcgaaatcaagttggattcactggaaagcataatcatgtgcttgtgcctggaagacatagaagcgatggacatgatcgaaggagccgccaccatcatccataatcaaggtggtgtctcacctcaccgcacagcaaccacataatttctgacatttccatagctctgcaatggtgcaatcgaagagcttgattttctggggtatttggctgacgaacactaacaagtgtatgtcgccgtcatctaccttggggaccctgatttcaatggtgcattccatcccttcgcggaggagcgccaagctgatgtccacggcgccatggacgccatggatccgttgtgagtacaccccgtgaaacggtgagaggtcgctgaaggcggccaccccattgatgagctgcaggtcgtcctgttcctcctcccctctcttcatcttgaggtcgtactcgatcatgcatggaggaattctgcaacgagatgtgtctcgcttaggaccccacaaacttacgagtgaatcgggatcggagtagtgtcctggcaagacgaaggggtcgtcccggctacggcggaagacgtagttgcgcaggagttcgtagagatcccgggcagccatgtagccatagatctgaaccggagcagcggcggcggacagagcagctatcctgacggagaagatctgcat
More
|
||||||||||
| CDS seq | atgcagatcttctccgtcaggatagctgctctgtccgccgccgctgctccggttcagatctatggctacatggctgcccgggatctctacgaactcctgcgcaactacgtcttccgccgtagccgggacgaccccttcgtcttgccaggacactactccgatcccgattcactcgtaagtttgtggggtcctaagcgagacacatctcgttgcagaattcctccatgcatgatcgagtacgacctcaagatgaagagaggggaggaggaacaggacgacctgcagctcatcaatggggtggccgccttcagcgacctctcaccgtttcacggggtgtactcacaacggatccatggcgtccatggcgccgtggacatcagcttggcgctcctccgcgaagggatggaatgcaccattgaaatcagggtccccaaggtagatgacggcgacatacacttgttagtgttcgtcagccaaataccccagaaaatcaagctcttcgattgcaccattgcagagctatggaaatgtcagaaattatgtggttgctgtgcggagcagccgatcaagaacgccgtccacatcgtggagatcccggtcaccggcgacggggcttgtcctgatggcgggaacgcggaggtcgccgcgtttcttgacaaggcggcggaggcggagtcttccgggagccatccgcttggcgagatcgccgggagcgcggggcacctgctgctgctgaagctgtggcagcgggaggagtcccgcctcggccgccgcgcgtgcgcgctcgaggcgctcatggacgcggcgcgccgcgacgcgttctacctctgcgcggccttcctcgccttccacggcctctccctcgcgctcctcttcgccgcctccgtgtccgcgtccgccgtctcgccgcccgcggagcagcgcgccgcctgttgcagcaggtggtgggtgccgtcgtccctgtcgctggtcgcgtccctcgcgctcgcggcggccgtgcagctccgggtctgcgcctactggcgcgcgtcgcggcggctgcgccgggagcgcggcgacgcgcgcgcgctggcgcggtgcgtgcaggagctccggatgaagggtgcggcgttcgacctgtccaaggagccgcagtacggggtgacgagggccaagtgcgccagcgtcgagggcgccggtgcgtggggcccgctccggtggtgctaccagaacatcgtcgccgcctgcctgctcgccgtcgccgccgccaccatgtgctccggcaagttcatcttgtgctcgtag
More
|
||||||||||
| Protein seq | MQIFSVRIAALSAAAAPVQIYGYMAARDLYELLRNYVFRRSRDDPFVLPGHYSDPDSLVSLWGPKRDTSRCRIPPCMIEYDLKMKRGEEEQDDLQLINGVAAFSDLSPFHGVYSQRIHGVHGAVDISLALLREGMECTIEIRVPKVDDGDIHLLVFVSQIPQKIKLFDCTIAELWKCQKLCGCCAEQPIKNAVHIVEIPVTGDGACPDGGNAEVAAFLDKAAEAESSGSHPLGEIAGSAGHLLLLKLWQREESRLGRRACALEALMDAARRDAFYLCAAFLAFHGLSLALLFAASVSASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVCAYWRASRRLRRERGDARALARCVQELRMKGAAFDLSKEPQYGVTRAKCASVEGAGAWGPLRWCYQNIVAACLLAVAAATMCSGKFILCS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0020660 | OsKeNa_08g0020660.01 | Chr08 | 25642466 | 25644713 | - | NAM | ||
| CDS seq | atgcagatcttctccgtcaggatagctgctctgtccgccgccgctgctccggttcagatctatggctacatggctgcccgggatctctacgaactcctgcgcaactacgtcttccgccgtagccgggacgaccccttcgtcttgccaggacactactccgatcccgattcactcgtaagtttgtggggtcctaagcgagacacatctcgttgcagaattcctccatgcatgatcgagtacgacctcaagatgaagagaggggaggaggaacaggacgacctgcagctcatcaatggggtggccgccttcagcgacctctcaccgtttcacggggtgtactcacaacggatccatggcgtccatggcgccgtggacatcagcttggcgctcctccgcgaagggatggaatgcaccattgaaatcagggtccccaaggtagatgacggcgacatacacttgttagtgttcgtcagccaaataccccagaaaatcaagctcttcgattgcaccattgcagagctatggaaatgtcagaaattatgtggttgctgtgcggagcagccgatcaagaacgccgtccacatcgtggagatcccggtcaccggcgacggggcttgtcctgatggcgggaacgcggaggtcgccgcgtttcttgacaaggcggcggaggcggagtcttccgggagccatccgcttggcgagatcgccgggagcgcggggcacctgctgctgctgaagctgtggcagcgggaggagtcccgcctcggccgccgcgcgtgcgcgctcgaggcgctcatggacgcggcgcgccgcgacgcgttctacctctgcgcggccttcctcgccttccacggcctctccctcgcgctcctcttcgccgcctccgtgtccgcgtccgccgtctcgccgcccgcggagcagcgcgccgcctgttgcagcaggtggtgggtgccgtcgtccctgtcgctggtcgcgtccctcgcgctcgcggcggccgtgcagctccgggtctgcgcctactggcgcgcgtcgcggcggctgcgccgggagcgcggcgacgcgcgcgcgctggcgcggtgcgtgcaggagctccggatgaagggtgcggcgttcgacctgtccaaggagccgcagtacggggtgacgagggccaagtgcgccagcgtcgagggcgccggtgcgtggggcccgctccggtggtgctaccagaacatcgtcgccgcctgcctgctcgccgtcgccgccgccaccatgtgctccggcaagttcatcttgtgctcgtag
More
|
|||||||
| Protein seq | MQIFSVRIAALSAAAAPVQIYGYMAARDLYELLRNYVFRRSRDDPFVLPGHYSDPDSLVSLWGPKRDTSRCRIPPCMIEYDLKMKRGEEEQDDLQLINGVAAFSDLSPFHGVYSQRIHGVHGAVDISLALLREGMECTIEIRVPKVDDGDIHLLVFVSQIPQKIKLFDCTIAELWKCQKLCGCCAEQPIKNAVHIVEIPVTGDGACPDGGNAEVAAFLDKAAEAESSGSHPLGEIAGSAGHLLLLKLWQREESRLGRRACALEALMDAARRDAFYLCAAFLAFHGLSLALLFAASVSASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVCAYWRASRRLRRERGDARALARCVQELRMKGAAFDLSKEPQYGVTRAKCASVEGAGAWGPLRWCYQNIVAACLLAVAAATMCSGKFILCS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0020660 | OsKeNa_08g0020660.02 | Chr08 | 25641479 | 25643343 | - | IsoSeq | ||
| CDS seq | atcgcttctccccttccatctcctcttctccccgatctcgcggcttccaatctcagatcaactcgaagctttccaaacgaatccccgctttccttccagaaccatcgcttcttgacttcttgggagcttctggattctgatctatggaggagcagccgatcaagaacgccgtccacatcgtggagatcccggtcaccggcgacggggcttgtcctgatggcgggaacgcggaggtcgccgcgtttcttgacaaggcggcggaggcggagtcttccgggagccatccgcttggcgagatcgccgggagcgcggggcacctgctgc
More
|
|||||||
| Protein seq | IASPLPSPLLPDLAASNLRSTRSFPNESPLSFQNHRFLTSWELLDSDLWRSSRSRTPSTSWRSRSPATGLVLMAGTRRSPRFLTRRRRRSLPGAIRLARSPGARGTCC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.840412 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0496600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020750 | RBH | 0.0 | 0.0 | 1.046438 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020670 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020540 | RBH | 0.0 | 2.661357 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020760 | RBH | 0.0 | 0.077356 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020640 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0391300 | RBH | 1.4641175 | 0.80715 | 0.692183 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020520 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0411300 | RBH | 1.2474265 | 0.0912595 | 4.8390365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020830 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020170 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020320 | RBH | 0.0 | 0.724189 | 0.138688 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020480 | RBH | 0.0 | 0.0 | 0.591425 |
