Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0020330 | OGI:08070030 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:25414132-25416240 | ||||||||
| Gene Symbol | C3H57, OsC3H57 | ||||||||||
| DNA seq | atgaagcaagaggaggatgagctagccgtggatcccggtgtcggtgctgtgtgcgatcctgtgacgaagctgcggttcgaagcgatcgtctgcctcctggataggattccgatcacgctgcagcagatcgacatgtttggccaggacgtggcgttccgcacgaagagaattggcaacatagaggcgttgctcgacttcctcaaaggaagcgcggccgcgacatggggagcgcgcgccggcgccggcgagccgatcgatgcgtcgtcgccggagcttcaccgtctggtggaggatgcagagacagcttaccgcgacgtccgcggcctccaacccagaatggtcgtgcaaatgccccgcgtgttccacaaggtgtgtctcccgaagctgcaccagctgctggtcatcgcgcgccgcctcctcgcccagaacgtggcgctccgccgacttctccttcaggtattctcgcaactgcgacgcgcgaggctgaatcgatcctgagtttgtgaatggtttttttgcagtagccagtgggctgtgacgtctctcccatggcgttggccgaggccgctgtaagttcggacgacttcgagcggcacggccgcaacaaggtcgtcatagacgagttcggctacgaggacctgctgcgccgccgccacaccggccacgagtcgcagaacgatgcggacgacgcagagcagcacggccgcgaggtcagagaaggcgagtacgaggacctgatcctgatgcgccaccgcgacaccagccacgagttgttgcaggatgatgcgcgccggcgccgcgcggatgcagaggcagagcagcaaggcggcgacggcgaggtcagagatgagtacgaggactacctgtgtcgccagctcggcgccgtctacagcgggcccgatcaaatctacgagcacgacatgcgaggtccggaaccagcacactcgccaaacacgcccgaccagatctacgtcccctgcgaaaggatgcttccctacccaagcaactgcgacaacgccgaggaccggattcatatggcatgtcttgctctcaagaacctggtaaaagacatggaaggaatctactctcctcgaggaaccttgtggcagtatctggaggacgtcatctctcttgcgcatgctctgtttctggagaacaccaagctccaccggttcactgatcaggcttcgcaccaggacttgccgttgcagccgccgcagggcttcccatttcaacagcagccgcagcacgatggctaccagcagccgggcgtcccgttccagcaaccgcagcaaggtggctactacggccacggccagggcatcatgtttcagcgaggtggctacctccaggatgtcccgttccagcactggcagtggcagcagggtggttacggacaaggcttcatgtttccgcaggctcagcatcaaggtggctacggccaaggtttcctgtccgagcagccgctgcccggtgaccccagcttcatgaacatgcaggtgagctattcgatcaacttgctcacggtgaatggcatggcaagtcgatcgatcggcaaccggccggtaatggatcagtgacagacacgttcgtgcttgttgtgcatgttcttaggctccttacgacggcgacgggggagtcctgttccagaagccgcagcactatcaccatgggcatgttccgagcgagaagggcgctattcaggtgagccatatatatccagtgaacttgcctcacggtacgtacacgcaagtgcaaccagcaacggattgagagtgagtgacacattacattgtgcatgtcagcaggccaaggggaagcagaagatgcgggaaccaaaaactgtcatgtgcccggactggtgcagaaccggacattgttcctctggtgacgggtgcgaatatgctcacagtcaagacgaactgcgggtaatcgacgcccgccccaagtacagaacagagccgtgccgttactggctagctgggaaagggtgctggtatggggacaaatgccggtacaagcagcaccgattagctcgggagccactgtatgtcgatccattcttgacaggtactacatatgatagatttgctgattaattgtcatgtt
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| CDS seq | atgaagcaagaggaggatgagctagccgtggatcccggtgtcggtgctgtgtgcgatcctgtgacgaagctgcggttcgaagcgatcgtctgcctcctggataggattccgatcacgctgcagcagatcgacatgtttggccaggacgtggcgttccgcacgaagagaattggcaacatagaggcgttgctcgacttcctcaaaggaagcgcggccgcgacatggggagcgcgcgccggcgccggcgagccgatcgatgcgtcgtcgccggagcttcaccgtctggtggaggatgcagagacagcttaccgcgacgtccgcggcctccaacccagaatggtcgtgcaaatgccccgcgtgttccacaaggtgtgtctcccgaagctgcaccagctgctggtcatcgcgcgccgcctcctcgcccagaacgtggcgctccgccgacttctccttcagccagtgggctgtgacgtctctcccatggcgttggccgaggccgctgtaagttcggacgacttcgagcggcacggccgcaacaaggtcgtcatagacgagttcggctacgaggacctgctgcgccgccgccacaccggccacgagtcgcagaacgatgcggacgacgcagagcagcacggccgcgaggtcagagaaggcgagtacgaggacctgatcctgatgcgccaccgcgacaccagccacgagttgttgcaggatgatgcgcgccggcgccgcgcggatgcagaggcagagcagcaaggcggcgacggcgaggtcagagatgagtacgaggactacctgtgtcgccagctcggcgccgtctacagcgggcccgatcaaatctacgagcacgacatgcgaggtccggaaccagcacactcgccaaacacgcccgaccagatctacgtcccctgcgaaaggatgcttccctacccaagcaactgcgacaacgccgaggaccggattcatatggcatgtcttgctctcaagaacctggtaaaagacatggaaggaatctactctcctcgaggaaccttgtggcagtatctggaggacgtcatctctcttgcgcatgctctgtttctggagaacaccaagctccaccggttcactgatcaggcttcgcaccaggacttgccgttgcagccgccgcagggcttcccatttcaacagcagccgcagcacgatggctaccagcagccgggcgtcccgttccagcaaccgcagcaaggtggctactacggccacggccagggcatcatgtttcagcgaggtggctacctccaggatgtcccgttccagcactggcagtggcagcagggtggttacggacaaggcttcatgtttccgcaggctcagcatcaaggtggctacggccaaggtttcctgtccgagcagccgctgcccggtgaccccagcttcatgaacatgcaggctccttacgacggcgacgggggagtcctgttccagaagccgcagcactatcaccatgggcatgttccgagcgagaagggcgctattcaggccaaggggaagcagaagatgcgggaaccaaaaactgtcatgtgcccggactggtgcagaaccggacattgttcctctggtgacgggtgcgaatatgctcacagtcaagacgaactgcgggtaatcgacgcccgccccaagtacagaacagagccgtgccgttactggctagctgggaaagggtgctggtatggggacaaatgccggtacaagcagcaccgattagctcgggagccactgtatgtcgatccattcttgacaggtactacatatgatagatttgctgattaa
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| Protein seq | MKQEEDELAVDPGVGAVCDPVTKLRFEAIVCLLDRIPITLQQIDMFGQDVAFRTKRIGNIEALLDFLKGSAAATWGARAGAGEPIDASSPELHRLVEDAETAYRDVRGLQPRMVVQMPRVFHKVCLPKLHQLLVIARRLLAQNVALRRLLLQPVGCDVSPMALAEAAVSSDDFERHGRNKVVIDEFGYEDLLRRRHTGHESQNDADDAEQHGREVREGEYEDLILMRHRDTSHELLQDDARRRRADAEAEQQGGDGEVRDEYEDYLCRQLGAVYSGPDQIYEHDMRGPEPAHSPNTPDQIYVPCERMLPYPSNCDNAEDRIHMACLALKNLVKDMEGIYSPRGTLWQYLEDVISLAHALFLENTKLHRFTDQASHQDLPLQPPQGFPFQQQPQHDGYQQPGVPFQQPQQGGYYGHGQGIMFQRGGYLQDVPFQHWQWQQGGYGQGFMFPQAQHQGGYGQGFLSEQPLPGDPSFMNMQAPYDGDGGVLFQKPQHYHHGHVPSEKGAIQAKGKQKMREPKTVMCPDWCRTGHCSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRYKQHRLAREPLYVDPFLTGTTYDRFAD |
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| Function | Putative zinc finger CCCH domain-containing protein 57 [UniProtKB/Swiss-Prot:A3BUD2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0020330 | OsKeNa_08g0020330.01 | Chr08 | 25414132 | 25416240 | + | NAM | ||
| CDS seq | atgaagcaagaggaggatgagctagccgtggatcccggtgtcggtgctgtgtgcgatcctgtgacgaagctgcggttcgaagcgatcgtctgcctcctggataggattccgatcacgctgcagcagatcgacatgtttggccaggacgtggcgttccgcacgaagagaattggcaacatagaggcgttgctcgacttcctcaaaggaagcgcggccgcgacatggggagcgcgcgccggcgccggcgagccgatcgatgcgtcgtcgccggagcttcaccgtctggtggaggatgcagagacagcttaccgcgacgtccgcggcctccaacccagaatggtcgtgcaaatgccccgcgtgttccacaaggtgtgtctcccgaagctgcaccagctgctggtcatcgcgcgccgcctcctcgcccagaacgtggcgctccgccgacttctccttcagccagtgggctgtgacgtctctcccatggcgttggccgaggccgctgtaagttcggacgacttcgagcggcacggccgcaacaaggtcgtcatagacgagttcggctacgaggacctgctgcgccgccgccacaccggccacgagtcgcagaacgatgcggacgacgcagagcagcacggccgcgaggtcagagaaggcgagtacgaggacctgatcctgatgcgccaccgcgacaccagccacgagttgttgcaggatgatgcgcgccggcgccgcgcggatgcagaggcagagcagcaaggcggcgacggcgaggtcagagatgagtacgaggactacctgtgtcgccagctcggcgccgtctacagcgggcccgatcaaatctacgagcacgacatgcgaggtccggaaccagcacactcgccaaacacgcccgaccagatctacgtcccctgcgaaaggatgcttccctacccaagcaactgcgacaacgccgaggaccggattcatatggcatgtcttgctctcaagaacctggtaaaagacatggaaggaatctactctcctcgaggaaccttgtggcagtatctggaggacgtcatctctcttgcgcatgctctgtttctggagaacaccaagctccaccggttcactgatcaggcttcgcaccaggacttgccgttgcagccgccgcagggcttcccatttcaacagcagccgcagcacgatggctaccagcagccgggcgtcccgttccagcaaccgcagcaaggtggctactacggccacggccagggcatcatgtttcagcgaggtggctacctccaggatgtcccgttccagcactggcagtggcagcagggtggttacggacaaggcttcatgtttccgcaggctcagcatcaaggtggctacggccaaggtttcctgtccgagcagccgctgcccggtgaccccagcttcatgaacatgcaggctccttacgacggcgacgggggagtcctgttccagaagccgcagcactatcaccatgggcatgttccgagcgagaagggcgctattcaggccaaggggaagcagaagatgcgggaaccaaaaactgtcatgtgcccggactggtgcagaaccggacattgttcctctggtgacgggtgcgaatatgctcacagtcaagacgaactgcgggtaatcgacgcccgccccaagtacagaacagagccgtgccgttactggctagctgggaaagggtgctggtatggggacaaatgccggtacaagcagcaccgattagctcgggagccactgtatgtcgatccattcttgacaggtactacatatgatagatttgctgattaa
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| Protein seq | MKQEEDELAVDPGVGAVCDPVTKLRFEAIVCLLDRIPITLQQIDMFGQDVAFRTKRIGNIEALLDFLKGSAAATWGARAGAGEPIDASSPELHRLVEDAETAYRDVRGLQPRMVVQMPRVFHKVCLPKLHQLLVIARRLLAQNVALRRLLLQPVGCDVSPMALAEAAVSSDDFERHGRNKVVIDEFGYEDLLRRRHTGHESQNDADDAEQHGREVREGEYEDLILMRHRDTSHELLQDDARRRRADAEAEQQGGDGEVRDEYEDYLCRQLGAVYSGPDQIYEHDMRGPEPAHSPNTPDQIYVPCERMLPYPSNCDNAEDRIHMACLALKNLVKDMEGIYSPRGTLWQYLEDVISLAHALFLENTKLHRFTDQASHQDLPLQPPQGFPFQQQPQHDGYQQPGVPFQQPQQGGYYGHGQGIMFQRGGYLQDVPFQHWQWQQGGYGQGFMFPQAQHQGGYGQGFLSEQPLPGDPSFMNMQAPYDGDGGVLFQKPQHYHHGHVPSEKGAIQAKGKQKMREPKTVMCPDWCRTGHCSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRYKQHRLAREPLYVDPFLTGTTYDRFAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0491700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38370 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0491700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020300 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0387400 | RBH | 0.0268045 | 0.010759 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020170 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0407700 | RBH | 0 | 0.007273 | 0.114204 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020480 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020140 | RBH | 0.0 | 0.0 | 0.000000 |
