Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0018030 | OGI:08064520 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:23232587-23233916 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccgccgcgaaacgaggcaatggcgtcggggtcttccagttccaacgacgccgccgccgacctcaccgtcctcgtcgacgacttctacttctccgtcctctcccacggccgcaacgacgacgacgactccgccgatggagacgacggcgagctcttcccgatatccgacgagaagtacgcctccgagctgcagctccaggaggtgatcatgtcgtcctccgtggcggccaccacggcgcgctcctcgtcggcgccggttatcttcataggtgagtgctcctcctcccacgccgcgtcgtcgtcgtctcggttgacctcgatccccgccgccgccgcgacgacgctcgtcttctgcaagatctgcatggacgccgtgccgccgtccgccgcgcaccgcgcgagccgcgggtgcgaccacgccttctgcgcggcgtgcctcgcgggctacgtcggcgccaagatccaggagaggatcgccgacgtccggtgccccgaggagcggtgccgcggcgcgctcgacccggagctctgccaggggatcctcccgcgggaggtgttcgaccggtggggcgcggcgctgtgcgaggccatggtgctcgccgccccgagggcgtactgcccgttcaaggactgctcggcgatgatgctggacgacgccggcgaggccgtcaccgagtcggagtgcccgagctgccggcgcctcttctgcgcgcagtgcgccgtgccgtggcacgccggcgtcgactgcgcggcgtacaagaagctcggcaagggggacaggggcaaggaggacctgctggtggtggagatggccaaggggaagaagtggaagaggtgccccaagtgcaagtacttcgtggagaagtcccaaggttgcctgcacatcacctgcaggtgctgcatcattttatcgttcagatgtcttttcttccatatcttgaattttctttgcaggagtatatatgttgtatcaaattgtttttgagatgatcatgatcatcacaacattttgcaggtgtggcttcgagttctgctatggatgtggagggcagtggggcgttactcatgcgagttgcagcactgcatgagaattccagtttaattttggctgggctgatctgattgaatttttctgtgttctcagtgagaccctagtagcatcaattatcatatttaggagaccgatggtcatcagtagcatgaattatatgtcattctctcaccgaattaagtttcggttatcaaaagtatgaacttggagctaatttctaaatctaaattcgctacacatggcacacagctaccgcgataatattcgcttgaatacca
More
|
||||||||||
| CDS seq | atggcgtcggggtcttccagttccaacgacgccgccgccgacctcaccgtcctcgtcgacgacttctacttctccgtcctctcccacggccgcaacgacgacgacgactccgccgatggagacgacggcgagctcttcccgatatccgacgagaagtacgcctccgagctgcagctccaggaggtgatcatgtcgtcctccgtggcggccaccacggcgcgctcctcgtcggcgccggttatcttcataggtgagtgctcctcctcccacgccgcgtcgtcgtcgtctcggttgacctcgatccccgccgccgccgcgacgacgctcgtcttctgcaagatctgcatggacgccgtgccgccgtccgccgcgcaccgcgcgagccgcgggtgcgaccacgccttctgcgcggcgtgcctcgcgggctacgtcggcgccaagatccaggagaggatcgccgacgtccggtgccccgaggagcggtgccgcggcgcgctcgacccggagctctgccaggggatcctcccgcgggaggtgttcgaccggtggggcgcggcgctgtgcgaggccatggtgctcgccgccccgagggcgtactgcccgttcaaggactgctcggcgatgatgctggacgacgccggcgaggccgtcaccgagtcggagtgcccgagctgccggcgcctcttctgcgcgcagtgcgccgtgccgtggcacgccggcgtcgactgcgcggcgtacaagaagctcggcaagggggacaggggcaaggaggacctgctggtggtggagatggccaaggggaagaagtggaagaggtgccccaagtgcaagtacttcgtggagaagtcccaaggttgcctgcacatcacctgcaggtgtggcttcgagttctgctatggatgtggagggcagtggggcgttactcatgcgagttgcagcactgcatga
More
|
||||||||||
| Protein seq | MASGSSSSNDAAADLTVLVDDFYFSVLSHGRNDDDDSADGDDGELFPISDEKYASELQLQEVIMSSSVAATTARSSSAPVIFIGECSSSHAASSSSRLTSIPAAAATTLVFCKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRCPEERCRGALDPELCQGILPREVFDRWGAALCEAMVLAAPRAYCPFKDCSAMMLDDAGEAVTESECPSCRRLFCAQCAVPWHAGVDCAAYKKLGKGDRGKEDLLVVEMAKGKKWKRCPKCKYFVEKSQGCLHITCRCGFEFCYGCGGQWGVTHASCSTA |
||||||||||
| Function | Probable E3 ubiquitin-protein ligase RNF217 [UniProtKB/Swiss-Prot:Q4KLT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0018030 | OsKeNa_08g0018030.01 | Chr08 | 23232587 | 23233916 | + | NAM | ||
| CDS seq | atggcgtcggggtcttccagttccaacgacgccgccgccgacctcaccgtcctcgtcgacgacttctacttctccgtcctctcccacggccgcaacgacgacgacgactccgccgatggagacgacggcgagctcttcccgatatccgacgagaagtacgcctccgagctgcagctccaggaggtgatcatgtcgtcctccgtggcggccaccacggcgcgctcctcgtcggcgccggttatcttcataggtgagtgctcctcctcccacgccgcgtcgtcgtcgtctcggttgacctcgatccccgccgccgccgcgacgacgctcgtcttctgcaagatctgcatggacgccgtgccgccgtccgccgcgcaccgcgcgagccgcgggtgcgaccacgccttctgcgcggcgtgcctcgcgggctacgtcggcgccaagatccaggagaggatcgccgacgtccggtgccccgaggagcggtgccgcggcgcgctcgacccggagctctgccaggggatcctcccgcgggaggtgttcgaccggtggggcgcggcgctgtgcgaggccatggtgctcgccgccccgagggcgtactgcccgttcaaggactgctcggcgatgatgctggacgacgccggcgaggccgtcaccgagtcggagtgcccgagctgccggcgcctcttctgcgcgcagtgcgccgtgccgtggcacgccggcgtcgactgcgcggcgtacaagaagctcggcaagggggacaggggcaaggaggacctgctggtggtggagatggccaaggggaagaagtggaagaggtgccccaagtgcaagtacttcgtggagaagtcccaaggttgcctgcacatcacctgcaggtgtggcttcgagttctgctatggatgtggagggcagtggggcgttactcatgcgagttgcagcactgcatga
More
|
|||||||
| Protein seq | MASGSSSSNDAAADLTVLVDDFYFSVLSHGRNDDDDSADGDDGELFPISDEKYASELQLQEVIMSSSVAATTARSSSAPVIFIGECSSSHAASSSSRLTSIPAAAATTLVFCKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRCPEERCRGALDPELCQGILPREVFDRWGAALCEAMVLAAPRAYCPFKDCSAMMLDDAGEAVTESECPSCRRLFCAQCAVPWHAGVDCAAYKKLGKGDRGKEDLLVVEMAKGKKWKRCPKCKYFVEKSQGCLHITCRCGFEFCYGCGGQWGVTHASCSTA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0451800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g35060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0451800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018140 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017960 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018240 | SBH | 0.0 | 0.020892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018080 | SBH | 0.0 | 2.814971 | 1.061523 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0353300 | RBH | 0.044646 | 0.020438 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018010 | SBH | 0.0 | 0.118672 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0370400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017350 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017620 | SBH | 0.0 | 1.551243 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017450 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018250 | SBH | 0.0 | 0.061088 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017660 | SBH | 0.0 | 1.638698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023340 | SBH | 2.619858 | 10.073223 | 8.634802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017920 | SBH | 0.0 | 1.369732 | 0.0 |
