Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0017550 | OGI:08063100 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:22745381-22750853 | ||||||||
| Gene Symbol | COE1, coe1 | ||||||||||
| DNA seq | caacatccctccccttacatacagtgatacagataaggagttcagaattcagaagaagcccatacatatatgaacaggggtgtactgcaaaagtttgctcgagatcagggccagaatgcaaaccaaaggtcttctgcagcgctgcatgtgccatgtccgtccccaaatcaacaaaagaaagagagaaaagaaagcagcagcagcaaaagataaagaagcctgtgaaaagaagcaaaagagaaaccggagaggaggagcccctttttctttacatctttctcggggaaagggcctctctttgatcagacagaaactacacactgtggtctaaaactaaaaagcatctcaatcactttgaaactactcgtactactccagctagcaacaaatccaatcccttccctctgtaatatatttttcttctctttttttcctgaagtactctccctgaatatctgattctctgaatttctttttcagtgctctgaatgctctgctgcattctgctgctaccttggccctgacagctccatctcctctaccatgtcgatggaccgcacctcgtcgctgctaaggctgctgtcgttgtcgtggaagtcgttgaagaagacggagccgttggagtcgttgcggtggtcgtagccgagctcatggggcgccgccgccgccgccatcgccgccggccggtggttggcctcccatttctcggcgagcccgtctccctccagcatccggaccacctccgacatcctcggccggtgagacggctggaactgggtgcagagcagcgccacctgcaccatctccgccacctctatcctgtcgtagtgaggccccaaatcttggtccactagcaagtcatgcagcttctcttggtgcaccttcctcaccttcattttgataacacgatcgaacgaaaacaaaaaagaagaaaattttcagatcatttacacatggagattaagtagttgaagacattgtcatttttcagaagcaagtcatttgcatgccatatgcagagtgaacagtacgtgggaggacgatcagcattcaaacatgcagtggcaatgcttgcaggattgcgttagtatgtcaggttcatagtactcgcaattaatcttagactgacagttggggcgcctactgactactgtcattcgagcatcagattcactagaagttgctattgaatgagcagcgcctcaaagtgcagtgagccagtgaccgcgcgcgcaatgaacgcacatgctagtgtactggatggatctttcgcaaaagatttgcgaactttaccaaagacattcacgtacgggctcgatcaaagcaaccgaggcttttaattcgtcaaacaagaactagtgcaacatcttttcgatcacggctcaaacagcagctaaaaaaagctgaaaattggagaagaaatgtggaagtgcatgcttacccaatcgagcatgacgcccttctggtgctggatgacgccggagcccttgccgacctcgagcgcgcgctggccggtgacgagctcgagcagcaggatgccgaagccgaacacgtcggtcttctccgacgactgccccgtggagaggtactccggcgcgatgtgccccaccgtgccgcgcaccgccgtggtgacgtgggagtcgccgtggtcgagcagcttggcgagcccgaagtcgccgacgacggcctcgtggcactcgtccagcagcacgttcgcggccttcacgtcgcggtggatgatctttgggtcgcactgctcgtgcaggtacagcaatcccctcgccgtccccaccgcgatccgcttcctcgtctgccagtccagcggcggcttcccttcataaattttttgcgtaacaaatgtttcaacaaaatttgctccaaacaatttcagttctcaatgcgcagcacaagacaacaaaacgccaattgcttgtgagtataaatgctgcatacagttgctatgtttgaaccagcaaggtacgtagggtatacagaacccgtacgtccccctgcatcgtgaacaaaaaccacgaacgcggccaacgtacgtactactgaaataacgacgtgtacagtatgccacaaacttgttggcacatgcgagcacgcagcaacaagccggcaacagcgaccagacacacgggctcgtagcgtagctggggcacgtatagcctgtgctgccgctggctgcctcccctgcaacagctgcggctagggagaggaggaggccggccccctgccggaataaaagaagaaacaaacgtttccctgcaactcccctgaccggtggccccctcccacccggaccaccacaccgatctccaaaaaccccaagcaccgtggcagcactactcctactgttactccctctgttccaaaataagtacaattatggttttccgcgtctaactttaaccgttcgtcttatttaaaaactttttgaaaaaattaaaaacataagccatgaataaagtactattcatgttttatcatctcataacaacaaaaatactaattataaaaaaattttaaataaaacggataatcaaagttgggtacagaaacttatggctacacttattttgggacggaggtagtactgtataaaaaccatcgcaatgatcgcgttacacccagacctcaaccctgagcccctgatgaccactcgtcatcatgtttgcccaatttactgctacagccgcggcggccggtgaaccagccgcacgccgttgttgcgccgcgcagcgaggaaggacgcgcacgccggtgaagcggacaaaacgtgagtgcggtggcgcctggcgagtggggcccgtgggggaggaggcaaagtacaggacggggtggaggcgcgaccacgcctgaccacgctgacacacagggggacggggactacgactgatccatccccatgactcctgcgtgcaccccaacgcgcacgcgggacccacacaccacgcacccacgaaatcgacactaccactgtgttgcgtgtgtcacgttaagcgtacgtaacgtacctcgaaggcgggaggcgacgctgccgttgggcatgtaggggtagacgaggaggcgctcgccggaggccgcggcgcagaagccgacgaggcggaggaggtggcggtgcacggcgaggctgatcatctccacctccgtccggaactgcgcctccccggacgcggtcgggtccttgagccgcttcaccgccacgaccgtgccgtcggagagcctcccccggtacacgtccccgaaccctcctttccccagtatgttcctcgcgctgaacccgtccgtcgccgcgtgcagctccctcagcccgaactgcctcacgttccccagcctcgccatcacctcccctcctcccccatcctccacgtctctccccttctctgaaatcaccaattacactcacatattaactaactgatcgatcgtgcattttagtactggtgttgatggggacgtggcgtaccgaggatgccgaggacggaggaggggcccgagaggaggcagcggtgccggcgcctgcgcctccagagaaagcaggagacggcgaggagcacaagcgcggaggcgccaaggcttgtccctactccgatcggcaaccgcgcggcgcctcctccaccctttgacctccccaccgctgccgctgccgcccctgcagtgcacacgtacaccgcgcatgcatgcacatacgcccaaacgaacacgattaaactccctccgatcccccaaaccgatcgatcccaagaatgcaaagacaagacgagaggaggttggactcactgctgctgctgctcggagtggagtccagcgggaatggcacggtgaccggggcgaccacggtggcgcactccgctgcgttcgcgttccccgcatggctgccgctgctgctcccgcatatcattggattgcccacgacgctgcatgcgtgcacgcataacatgattgaaaaaggaaaaaaaaacacggcatcagattcgaaaacatccaagggatatttctatagtattttataagttgtaacagagctatagctagtggcggctggaatagaataagaagacgaatgcacgagcagtggtactagggaggagtagtccatacttgaatgttcttgtggggaagtgaggaacagggccagtgaggttgttgtaggacaagtccctgcaaaatcgcatgcacaccaaaccataccaagatcaatcacatcgatccgttcatcggctatgcaagacaaaaagaattgagacgatttgacagagttggattaattagcgtacaggaaggagagctgtgggatcttggccagcgacgacgggaacgccccggacaagctgttgttgtttagcctcctgcggcaagattaacacgcaagtgagacaaccatgaagaacttaaactattttagctttagtgtagagtagtaaagtatggaatggaatggaatgtgttggggggagagaagtgactgacaggtatcggagggtggagaggcggccgagcgtgtcggggacgcggccggagaagcggttgttggagaggtcgagcgtctgcagcctcggcagcgcgcccagctccggcggcagccggccggtgatgttgttgttctgcagcagcctgaaaacaaagtcgaagacaaacgacgtcatcatcaccatttgatgctctgctctgcttcttcctcctccatttctcccaagaacacgagatgaatcgattggaatctctaacagaagcaattaaacaagaaaacaaaagtttctttctcttgcttacacttgttcaagattggtgaggttggcgatcctgccggacagggtccccgacaatccctggctgggcgctcccctgagacgaggtacacaagcacgcattagtggagctgatcgagccggtcggctgccatttccggtctctcgctaagttgctcaaaacaagcaaaagctagacgacgacgacgaagactgagagagagagagagagagagagagagagcgagcttacaggccgatgacgaggttgtgggcggagcaggtgaccatggcccagctgcaggggtcgacggagtcctcgtcccagttgttcagcacgccgtgcgggtcgaccagcccctgcctgatggcgatcagcgcctccactgcacgcgcattcgccgcgccaaatacaaccaacatgcggtctcatcagccgcagccatcttcggttccaagaaacgtcagacaagggcacgtaccttcagggttgaggggctcggaggagaaggcgaggaacggcgcgtaggagacgacgaggaagaagaggaggaggaagaggttggaggccattggaatgggggagcggagcagtgggaggaatgatggagaggagaggcgcccgagaggaagaaaagtgagaaggagggagaaggagaagcaggggtgaggggaggcaggcaggcaatcagccgtcgagcgagtggagtagtggctct
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| CDS seq | atggcctccaacctcttcctcctcctcttcttcctcgtcgtctcctacgcgccgttcctcgccttctcctccgagcccctcaaccctgaagtggaggcgctgatcgccatcaggcaggggctggtcgacccgcacggcgtgctgaacaactgggacgaggactccgtcgacccctgcagctgggccatggtcacctgctccgcccacaacctcgtcatcggcctgggagcgcccagccagggattgtcggggaccctgtccggcaggatcgccaacctcaccaatcttgaacaagtgctgctgcagaacaacaacatcaccggccggctgccgccggagctgggcgcgctgccgaggctgcagacgctcgacctctccaacaaccgcttctccggccgcgtccccgacacgctcggccgcctctccaccctccgatacctgaggctaaacaacaacagcttgtccggggcgttcccgtcgtcgctggccaagatcccacagctctccttcctggacttgtcctacaacaacctcactggccctgttcctcacttccccacaagaacattcaacgtcgtgggcaatccaatgatatgcgggagcagcagcggcagccatgcggggaacgcgaacgcagcggagtgcgccaccgtggtcgccccggtcaccgtgccattcccgctggactccactccgagcagcagcagcagggcggcagcggcagcggtggggaggtcaaagggtggaggaggcgccgcgcggttgccgatcggagtagggacaagccttggcgcctccgcgcttgtgctcctcgccgtctcctgctttctctggaggcgcaggcgccggcaccgctgcctcctctcgggcccctcctccgtcctcggcatcctcgagaaggggagagacgtggaggatgggggaggaggggaggtgatggcgaggctggggaacgtgaggcagttcgggctgagggagctgcacgcggcgacggacgggttcagcgcgaggaacatactggggaaaggagggttcggggacgtgtaccgggggaggctctccgacggcacggtcgtggcggtgaagcggctcaaggacccgaccgcgtccggggaggcgcagttccggacggaggtggagatgatcagcctcgccgtgcaccgccacctcctccgcctcgtcggcttctgcgccgcggcctccggcgagcgcctcctcgtctacccctacatgcccaacggcagcgtcgcctcccgccttcgaggtacgttacgtacgcttaaccgtggtcaggcgtggtcgcgcctccaccccgtcctgtactttgcctcctcccccacgggccccactcgccaggcgccaccgcactcacgttttgtccgcttcaccggctcgtcggagaagaccgacgtgttcggcttcggcatcctgctgctcgagctcgtcaccggccagcgcgcgctcgaggtcggcaagggctccggcgtcatccagcaccagaagggcgtcatgctcgattgggtgaggaaggtgcaccaagagaagctgcatgacttgctagtggaccaagatttggggcctcactacgacaggatagaggtggcggagatggtgcaggtggcgctgctctgcacccagttccagccgtctcaccggccgaggatgtcggaggtggtccggatgctggagggagacgggctcgccgagaaatgggaggccaaccaccggccggcggcgatggcggcggcggcggcgccccatgagctcggctacgaccaccgcaacgactccaacggctccgtcttcttcaacgacttccacgacaacgacagcagccttagcagcgacgaggtgcggtccatcgacatggtagaggagatggagctgtcagggccaaggtag
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| Protein seq | MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDPHGVLNNWDEDSVDPCSWAMVTCSAHNLVIGLGAPSQGLSGTLSGRIANLTNLEQVLLQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSLSGAFPSSLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICGSSSGSHAGNANAAECATVVAPVTVPFPLDSTPSSSSRAAAAAVGRSKGGGGAARLPIGVGTSLGASALVLLAVSCFLWRRRRRHRCLLSGPSSVLGILEKGRDVEDGGGGEVMARLGNVRQFGLRELHAATDGFSARNILGKGGFGDVYRGRLSDGTVVAVKRLKDPTASGEAQFRTEVEMISLAVHRHLLRLVGFCAAASGERLLVYPYMPNGSVASRLRGTLRTLNRGQAWSRLHPVLYFASSPTGPTRQAPPHSRFVRFTGSSEKTDVFGFGILLLELVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLVDQDLGPHYDRIEVAEMVQVALLCTQFQPSHRPRMSEVVRMLEGDGLAEKWEANHRPAAMAAAAAPHELGYDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELSGPR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At2g23950 [UniProtKB/Swiss-Prot:Q0WVM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0017550 | OsKeNa_08g0017550.01 | Chr08 | 22745381 | 22750853 | - | NAM | ||
| CDS seq | atggcctccaacctcttcctcctcctcttcttcctcgtcgtctcctacgcgccgttcctcgccttctcctccgagcccctcaaccctgaagtggaggcgctgatcgccatcaggcaggggctggtcgacccgcacggcgtgctgaacaactgggacgaggactccgtcgacccctgcagctgggccatggtcacctgctccgcccacaacctcgtcatcggcctgggagcgcccagccagggattgtcggggaccctgtccggcaggatcgccaacctcaccaatcttgaacaagtgctgctgcagaacaacaacatcaccggccggctgccgccggagctgggcgcgctgccgaggctgcagacgctcgacctctccaacaaccgcttctccggccgcgtccccgacacgctcggccgcctctccaccctccgatacctgaggctaaacaacaacagcttgtccggggcgttcccgtcgtcgctggccaagatcccacagctctccttcctggacttgtcctacaacaacctcactggccctgttcctcacttccccacaagaacattcaacgtcgtgggcaatccaatgatatgcgggagcagcagcggcagccatgcggggaacgcgaacgcagcggagtgcgccaccgtggtcgccccggtcaccgtgccattcccgctggactccactccgagcagcagcagcagggcggcagcggcagcggtggggaggtcaaagggtggaggaggcgccgcgcggttgccgatcggagtagggacaagccttggcgcctccgcgcttgtgctcctcgccgtctcctgctttctctggaggcgcaggcgccggcaccgctgcctcctctcgggcccctcctccgtcctcggcatcctcgagaaggggagagacgtggaggatgggggaggaggggaggtgatggcgaggctggggaacgtgaggcagttcgggctgagggagctgcacgcggcgacggacgggttcagcgcgaggaacatactggggaaaggagggttcggggacgtgtaccgggggaggctctccgacggcacggtcgtggcggtgaagcggctcaaggacccgaccgcgtccggggaggcgcagttccggacggaggtggagatgatcagcctcgccgtgcaccgccacctcctccgcctcgtcggcttctgcgccgcggcctccggcgagcgcctcctcgtctacccctacatgcccaacggcagcgtcgcctcccgccttcgaggtacgttacgtacgcttaaccgtggtcaggcgtggtcgcgcctccaccccgtcctgtactttgcctcctcccccacgggccccactcgccaggcgccaccgcactcacgttttgtccgcttcaccggctcgtcggagaagaccgacgtgttcggcttcggcatcctgctgctcgagctcgtcaccggccagcgcgcgctcgaggtcggcaagggctccggcgtcatccagcaccagaagggcgtcatgctcgattgggtgaggaaggtgcaccaagagaagctgcatgacttgctagtggaccaagatttggggcctcactacgacaggatagaggtggcggagatggtgcaggtggcgctgctctgcacccagttccagccgtctcaccggccgaggatgtcggaggtggtccggatgctggagggagacgggctcgccgagaaatgggaggccaaccaccggccggcggcgatggcggcggcggcggcgccccatgagctcggctacgaccaccgcaacgactccaacggctccgtcttcttcaacgacttccacgacaacgacagcagccttagcagcgacgaggtgcggtccatcgacatggtagaggagatggagctgtcagggccaaggtag
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| Protein seq | MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDPHGVLNNWDEDSVDPCSWAMVTCSAHNLVIGLGAPSQGLSGTLSGRIANLTNLEQVLLQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSLSGAFPSSLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICGSSSGSHAGNANAAECATVVAPVTVPFPLDSTPSSSSRAAAAAVGRSKGGGGAARLPIGVGTSLGASALVLLAVSCFLWRRRRRHRCLLSGPSSVLGILEKGRDVEDGGGGEVMARLGNVRQFGLRELHAATDGFSARNILGKGGFGDVYRGRLSDGTVVAVKRLKDPTASGEAQFRTEVEMISLAVHRHLLRLVGFCAAASGERLLVYPYMPNGSVASRLRGTLRTLNRGQAWSRLHPVLYFASSPTGPTRQAPPHSRFVRFTGSSEKTDVFGFGILLLELVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLVDQDLGPHYDRIEVAEMVQVALLCTQFQPSHRPRMSEVVRMLEGDGLAEKWEANHRPAAMAAAAAPHELGYDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELSGPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.420573 | 0.373902 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0442700 | RBH | 0.0 | 0.000000 | 0.255620 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34380 | RBH | 0.0 | 0.118926 | 0.162719 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0442700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017700 | RBH | 0.074296 | 1.026254 | 0.694806 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010700 | RBH | 0.048277 | 0.401461 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017500 | RBH | 0.0 | 0.877397 | 1.125027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017780 | RBH | 0.0 | 0.018019 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017630 | RBH | 0.0 | 0.000000 | 2.193497 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0343200 | RBH | 1.7623125 | 1.850706 | 14.378502 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017540 | RBH | 0.000000 | 0.062631 | 0.390547 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0363500 | RBH | 2.5803555 | 2.0899695 | 44.6377715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017170 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016990 | RBH | 0.0 | 2.465546 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017810 | RBH | 0.071974 | 0.0 | 0.429828 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017390 | RBH | 0.0 | 0.347840 | 0.549579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017440 | RBH | 0.0 | 0.000000 | 0.928892 |
