Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_08g0007620 OGI:08022360 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr08:7868299-7873150
Gene Symbol -
DNA seq

tcatttgcgaagtatgcaaacattctccagaacctcgattagtagaattgggtataaactcttaaactgatgatactctggtgttccagtcaccgtttccagtgtgttcggattggcaatgaaggagaagcatgcctgtttgagcatgtcgcactggtgctgatcagcgagaagcaatataaccatcacgctcttcacatcaatatccaggcaaagcttcgtctcgcagatggccttcagcctttccagcccataacagtcagcagcacgaagcaagttatgagttgtgttatcaaaccacatcaatgggctagggttcatcgacgaatccatcacttctgcatacgacaatatgatatacatataccgcaagaatcagatatacatatattgaagaaatccagaaggtaattaattacaagatcagagtttctcgaattaaaaataaaatataactgatgcgatgatggtgtacaaacataaatactcgacattatagacttatatatagaggcaagctatcgctggagctagcaataggaactcgtatgtgacttacgttcaagttgctcttgttgttggtagatccatcccggctggatccacggccgatagatgcgctaccccatgacctctggctgccgggatcgcagaagacgagggagagagggaggagaggagggggatccacgagctcgccgcagccgccgctcaccgtcgccgtggctgtgatcgctcccgagggcggcggtgccaaatatgtcgcctgctcccgaggttgggggcggcaaatccgcactccgcggtcgctacgagggcgggggctgcagatctgctcgtcaccgttggcggggagacggcggatccacgcgctggtctcccactcccgctgtcgacactcctgaggttgggtaaagcagatccgcgcgccgccatcactctcgaggacgggggtggcagatccgctcgccggccgcccgctcccgccgccaccacccgccggccgcccgcccgcttgcccgccatcgttggtgccgtagtcgtccctcgtcgcactcggtgaggaggcgaagagaggagaaaaggagagagcaaaggagaggagaggaggaggaaggaagggagagagtggagaggagttaaaaagtttgaagtgatgagaaaatatctctgagaagaggaagggtatttttccatgcggttcacttaagagacctacatgcaaaaatgcggtcctttaagaggaccgcatgagaaaataggctcattttttcatgtggccccttaagaggcccatctacgaaaataaatttttggatgcgggcctcataaagagtcatttgcgaaaataagggttcgattttttgatgcgacttattacggtccacttgcaatctacaagggctctcgtatagaaaaatctttttttagtagtgtgtattccacaagcatatcattaattagcataaagaacatatgcatagtgtgtaagtgtgccgaaaattaaaatccaagcgtattaatgtaagtaatcatctgtttccttgttagcaatcgatctgagcaaccaggagggcatatgatgattatcatagcattaattaaaactgacatgtctttatcctaaaaaaacaatgtggtgcttacaatgtgatttccatgaatgtttaccttgctcacatgaagatatatcatgttctggatttgttttgatagggagggagagatttcttgttatgttaacacatgcactagcagcagaatacaactgcagctataagcattagaactcacatgatgcagagggctacttttgcattgtggattgctactattcctacttttctttccaaagtaacacacaattaattttactaggaaaaatttgggcatccataatacattaaaaattaaaatcaaacaagaaacttgaaccggctccaaacggatgccaccacaagtatagacccatacatgcaatcatagatagcatatatgcaaaacaaccatccgcgtggatcttgaatcttccacgccactctaggtgagtaacccactaatgaatgcatattcgctcgacatgcctttgcattatggcgggtatccaaacgcatgtgatgatttttggtatcagccactacaacattactctgaagaatctaacctatatacctagattacaaggaatgactatggttcaaaaattatcaaagaaaagtcataacatattaaatagctagatggtaattaatttaataggattaatactcttcataaataattaaagcataatagattgtaaagagtagatcatgacttgccttatggatcaagggctttgctaacgttatcgtcgtgttcttgctccacctagctcttgcagctctgcggttctatcgctgtgatctaacataaatacacaaaaacaacaataataaacctacaagaaaatactacgaatgaacggtaaaagaaatataaatataaatataaatataaataaataaataaataaataaataaaaatatatatatatatataattttctatgtcactctaggtgagtaacccactaatcaatgtgtattggcttgacatgcctttgcatgatggcaggtatatgatatatccaagtgtgtgtgatgatttttgttatattagccactacaacattactctcaagaatttaaacctatacctagtttacaaggaaccatcctatgacattatcaaagaagaatcataacatattaaacaaatagatggtaattaatctaacaagattaatactcttcagaaataattagaaaataaaataactatagcaggctagctttgtaggtgtttgatatagtgcaaggagtaggtcatgacttgccttgcagaacaagggctttaatttgctaacgtcagcgtagccttcttggtccacctagctcttgcccctccgacgattctatcgctgtgatctagcataaacacacaaaaacaacaacaaataaacatacgagaaaatactacaaatgaatagtaaaaaatataaaaatatataatcttcagtgtcactctaggtgagtaacccactaatcaatgtgtattggcttgacatgcctttgcatgagatatggcaggtatatccaagtgtgtgagatgatttttggtacattagccactacaacatttctctcaagaatttaaacatgtacctagttttcaaggaaccatggtttgacgattatcaaagaagaattaatcataacatgtattaaataaatagatggtaactaatcaaacgagattactcttcataaataagtacaaaataaaataactatagcaggcttttgtaggtgcatgtttgatatagtggaaggaggaggtcatgtcttgccgcccggatggttctgttggtgtgatctagcatgcatgaacacacaaagcaacaacaaataaaccaacaagaaaatactacaaacgaacagtaaaagaaatatcgaaaaatatataatggagcagcaattaattaataaagaaaagctagctagtgaaccgaaggttaaggatcattttatgatatctgtggtgcacatatggacagggtgaggtgaagagttgggtgtaatatggtggactattgagaaccagaactgaaccggcttaaaattgagtgaacccacataagaaccggttcggctcagcctcgggctaaccgtgacagttcatcggctcggctcggctcgaccaatgcaagtagctagtaggaacagtactgccgcctcttccacgtcgatcggctcggctcgatggacggagcagaggcggcggcggaagtcgacgtccacaagatcgaatcagcggcggccggagcgggagacgacgaagcgacgaccggcgagagagctcgggtggaaatcttggccgatccatggaggcgtccagcccgaggtcgaggaacccatttccgcctggcgccgtttgtagtcgcgccggtggctaagctagctttgcgacggtgccggtgaagacgaacgaagagggagctaGgggggaagtgaggggaggaaccattaccggccgggtcgaggcggcgccgtacgctcgcgagacgagactggctgcggcggcggcggcggcggtggcggcggaagcgggaatttgggggaatggatcgagagagagaagagaagctccaggttttccacggtggcgccctcgcctcgccggtttaaatagctcggctgagagaggagggatcgacggcggcgacgagcttgggctttccgttgagatgcatgctggacgaacgctttagggtttttctggggaccacgaggagcggagcgccagcagcaggtagcgcttgtgtcggcggtctggacaagcggccgctgcttttcaggctgggctgggctgggctgggctgggccgagcgcctggattattctcactattatctgctgagaaatatcaaatctaatttgttgcagaatgtagctgcagcttgcaagaactccccatttgttgtaaacccccaattattaactgtttaattcacttgcgcgcttttgtcaaacacgattaggctcgggcgcccaagatgcttaacgaaatatcggacgccttcttagttactcattctgcatttccttttctccaccaccgacctcacccgcgccacctcctctcccttaacgacctcgcccgcgtcacctcctctcccccgccaacaccgcctgcgtcggcttttgctgcgtcatcaccaagaactccttcctccactggatcctcaccatcaaaccacccgcccccactgctcagcttccttgacattggcagcggctctgtccccat

More
CDS seq

atggggacagagccgctgccaatgtcaaggaagctgagcagtgggggcgggtggtttgatggtgaggatccagtggaggaaggagttcttggtgatgacgcagcaaaagccgacgcaggcggtgttggcgggggagaggagttgtattctgctgctagtgcatgtgttaacataacaagaaatctctccctccctatcaaaacaaatccagaacatgatatatcttcatgtgagcaagaagtgatggattcgtcgatgaaccctagcccattgatgtggtttgataacacaactcataacttgcttcgtgctgctgactgttatgggctggaaaggctgaaggccatctgcgagacgaagctttgcctggatattgatgtgaagagcgtgatggttatattgcttctcgctgatcagcaccagtgcgacatgctcaaacaggcatgcttctccttcattgccaatccgaacacactggaaacggtgactggaacaccagagtatcatcagtttaagagtttatacccaattctactaatcgaggttctggagaatgtttgcatacttcgcaaatga

More
Protein seq

MGTEPLPMSRKLSSGGGWFDGEDPVEEGVLGDDAAKADAGGVGGGEELYSAASACVNITRNLSLPIKTNPEHDISSCEQEVMDSSMNPSPLMWFDNTTHNLLRAADCYGLERLKAICETKLCLDIDVKSVMVILLLADQHQCDMLKQACFSFIANPNTLETVTGTPEYHQFKSLYPILLIEVLENVCILRK

Function BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_08g0007620 OsKeNa_08g0007620.01 Chr08 7868299 7873150 - NAM
CDS seq

atggggacagagccgctgccaatgtcaaggaagctgagcagtgggggcgggtggtttgatggtgaggatccagtggaggaaggagttcttggtgatgacgcagcaaaagccgacgcaggcggtgttggcgggggagaggagttgtattctgctgctagtgcatgtgttaacataacaagaaatctctccctccctatcaaaacaaatccagaacatgatatatcttcatgtgagcaagaagtgatggattcgtcgatgaaccctagcccattgatgtggtttgataacacaactcataacttgcttcgtgctgctgactgttatgggctggaaaggctgaaggccatctgcgagacgaagctttgcctggatattgatgtgaagagcgtgatggttatattgcttctcgctgatcagcaccagtgcgacatgctcaaacaggcatgcttctccttcattgccaatccgaacacactggaaacggtgactggaacaccagagtatcatcagtttaagagtttatacccaattctactaatcgaggttctggagaatgtttgcatacttcgcaaatga

More
Protein seq

MGTEPLPMSRKLSSGGGWFDGEDPVEEGVLGDDAAKADAGGVGGGEELYSAASACVNITRNLSLPIKTNPEHDISSCEQEVMDSSMNPSPLMWFDNTTHNLLRAADCYGLERLKAICETKLCLDIDVKSVMVILLLADQHQCDMLKQACFSFIANPNTLETVTGTPEYHQFKSLYPILLIEVLENVCILRK

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0227900 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g13130 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0227900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0007550 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0007730 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0007690 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0007570 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0127000 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0007510 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0118600 RBH 2.5057695 4.9060555 31.086224
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0007160 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0007240 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0007100 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0007750 RBH 0.131967 0.0 0.052650
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0007180 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G007510 RBH 0.000000 2.703059 0.532943
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0007310 RBH 2.136028 5.935506 4.245904
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.