Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0006891 | OGI:08014510 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:6368677-6373969 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacgcacatctagcaaagaccaacgccgctgccctttccccatcgcggctgctggacccgacgccgccgccactgccctttccccatcgcgcctgctggacccgacgccgccgccctttcccattgctcccgctggagcccaacgccgcaggctgtagcccCaccctgtccccaacgtagcgcccggctgttggagctcgacgccgtcgcccttcgcccaacgcggcttctggagcccggcaccgccggctggatcccaagccccaccccatccccaggagctcgatgccagcttgctgcagctccaggacgccgggcttcatgggcacaactgctgggaacgcccccaagagcccgacgccgacgacagtagcccgcccccgcctctaggatctcgacggctgggccggctggctgcagatcctggCcgctgggcttcacgggctcaaccgctaggaagcccccaagagctctagcctgggatcactgccgatggcgggtgaggtcgaccagagactgccccatccccttcaattaggaaggaaaggtacatatgagaagaacttatgttttggttttaaattttgaactgaaaccatagatttgaagtgatagaaataggAaaatagcagtctgggcaatgatcagtcattgattcaatgcttgtcttatttcaatatgtaacagatggaaagaacttggatgaattgtaagttgtttagcaaggagcatcgggaGggggtcactgagttcatggactttgtttgtaaaaaTttgagtggcagtcagaagatattatgcccatgtcgtaagtgtttgaatcggttacatcaatataaaggacgtgtggaggatgacttacttatgtacgggatgtctaacacatacactcggtggatacatcatggagaaccattggtcattgtcactggaaatgttgagcatttgaatgaagataTtggctgcaatgttgagcatttgaatgaagatgttagctgcaatgttgaatttgagacgaatgagcctccggatgacccagaagatgatcaaatgtaccgtatggtacaggatctgtacccagatcaaaatcatggaccaagaacaaagtcaaagtttgccaccatattagaagagatgaaacaggtgctacaaccggttggtccctatactaggtttcttttgtggtgaagttgctccacatcaagtcattttacagaatcagcaatgtgcattcagtgctttttttgacctttaagttcagcatttccaaattgttctctccctgcatcctatgctgaagcgaaaagaatttattcgtgcattaggacttggatatgagtcaatacatgtgtgtccgaataactgtgttcttttccgaaaggagttggctaaaaaggatgcatgcccaatatgtggtgcttcaagatggaaggatgcagatagccgaaggaagattccagaaaaggttctaaggcattttcctttgattccaaggttgaagaggatgtttggatcgaaagaactttcagctgaggcacaatggcacaagttgaagaggaaaccagtggacaatgagcttagccatcctgctgatggtgaggcatggaaagattttgatagaaagtatgaatggtttgcaaatgatgcacggaatgtccgacttggcctcgctactgatgggtttaatccatttgggaagatgagctcctcatatagcatgtggccagtatttcttatcccttacaactttcctccgtggcaatgtatggagcaatccaacttcatgatgtgcctacttattcttggtccgacatgccctggaaaggatatggatctcttcctgcagccactggttgaagaattgttaaatctttggagtggtgtccctactttggatgcattgaccggcaaagaatttgatcttcacgctgcaatcatatggtgcattcatgattatccagcattgagcacactttcaggtagagtaactagaggctactatgcttgcgtttgttgtgataaaaatccttgctacaaaagacttaggaacaagatttgctacattggccatcgccgtttcttccagtggaccatatttggaggagaaagaaagattttaatggtcagactgaagaacgtgcgcaaccggaagaatttactcaggatgagttgatgcagcaattggcgagggtggaacatgtaagacctgggaaccatcctaataacaaaaagagaaagagggtagaagaaggtcaatgctggaagcgcaggtcgactctgtgggatttgccatattggtctaatttaaagctacgacacaatcttgatgttatgcatatcgagaaaaatatatgtgaggcccttcttggtacatttctcgacatcgcaggcaagtcaaaggactctgttactgcgaggctcgatttagaagatatgggcataaggaaaaatttacacttgaaggatgatgggaattcaacatgcactgctccacatgctccatatgtgatgactaaagcccagagaaaagctttctgtgctttcataaaaaatgtcaaattcccagatggatatgcctccaacttagcaaggtgtgttagtgttgatgaatgcaaagtacaggcattgaaaactcacgactgtcatatccttctgcaaaggatattaccagccggtctccgaggaatcatgcataaggaaatatatgaaacaattgctgaattaggtaactttttccagcaaatttgtgctaagaaattgaagttagatgctttgaacaagatgagaggtgaaatcccaataatattgtgcaagcttgagaagattttcccgcctgccttttttgatgtgatggtgcacttatgcattcatttaattgatgatgcaatcctaagaggtcctgttcaatatggatggatgtaccctgtagagcgtaggttgctgaccttgaaacgctttgtaaggaacatggcaaggcctgagggctccattgcagaggcatatgtcgcaaatgagtgcttgactgcttgctcaaggtattttgctgatgttgacactaggcacaatcgtgagggtaggaacaaagagcgtgttcctatgagtagatgtggtttatctattttccagcatggagcaaatctgttgggggcaccaaggcttacatatgagtagaaggagtatgataggatggtttggtatgtcctcaacaatactaaggaggtcgagccatttatagagtatgtccttgaatagcgcacctgtttttatttgtgtatcatataaaattttagctcttacatgggagttgtgcacctgtttgtaggatttacatgaaggatttacaaactgctggcagtcatgatgttgaggggaaccttgctaaggaatttccaggatggtttaggaaacatgtgagtcattatttaagtattttcagttttgactctgtgataatatatcattatttaagtatttccagtatattgcaaatgaatatatctcatacatatctcatttactgaagtgagaatgcaaatgaaatttacatatgtacatgaataaaatgcagctgtgctatcatgcatcattgcttctactgttgaaaaccttgcttggcagaatgaagcacatgagaggaatagagcatcgtgtgcattttttgtttttttacaacaaatgattttattagcagcatgtttagttttgagattagatgactaaattaagtgcagctgcctcttctgccatgatgacattcctgatagctccctgtatataagtctgataggatgattgttgttgcgtattggtgatggagattcccagtccagcgtccttgttcatctgtggggtgttgtcaggctgtgtggctacatccacatagcattttgttcctgtcaaaagagctggtagggctatggtgctgtgtggagtttcatgcacatgctagtgcaatagttggaggaagctgcagttttcagtgatgaccatcacacgaggaaatacggtatattaagtagagaagtcacaccattttttttctctaattgtaagaaatatcaggttcatgctagtgttacctgaatcattttgagaaaatgtctttttctccctaaaaaacaagtagaccaatatggaagaacctgtgcataaaaaatggacctaaggaaaaatctatttacaaatttttagagttaagtagtctgctagtacttgcattatttctggtgtaccttgctaatatatatatatatatatatatatatatatatatatattatatataatatattatatatatatatatatatatatatatatatatatactgcagcttgctactcggaggtttgtgaatggagaacaaatcgatgaagacctatatgcattggcaagtctaccacttcttagagttcgtatattttcaggatgtattgttgatggtgtccgatatcacaccgtggaacgtgagagcagtagaagaacacaaaacagtggagttatggttgagggcacacataatggagaagatatagacttttatggtcagctaaaagaagtaatacagttgcagtacaactctgacgctgacagtcaaaggacagtggtgttattcaagtgtgattggtttgatacctgtagcaaaaagtctaggatgaagaatgatggatatttcaaaagcatcagccatggaagttgttggtacaaggatgatgctttcattcttgccacacaggcaacaaaggttttctacttggatgataacaagcatggtgaaccctggaaagttgttcaaaaattttcgcatcggcacttgtggaatgtgaatgaggaggaaaatgatgacaggcaagagggaggggttgatctgacataccaagatgatgagcaggaaatatctcgagttgaaaccatggaaggatctctggtcgacaaacaaccagtcaacgaagatggtataagtgtaccaaagtccctagttgatcagattcgcaggcaacgggatctggaagttgaagaagatgacctgtacaatgatgatgacgatgatgataccttagggcagtatgatagtgaaaatgaatgtacaattatgatccctaatgatgatggtgagtatagtgatgtcgagtaattgagatatgtgaatctgagttgtgatgaaattgttgtttttaaacagctcctaatgtgttagccgtgaaataattatgaattgtgaactcaattgtgtaaactccttaattgagatatgcgaattccagctgttcttggtgcctggaattgtactgac
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| CDS seq | atgcagcaattggcgagggtggaacatgtaagacctgggaaccatcctaataacaaaaagagaaagagggtagaagaaggtcaatgctggaagcgcaggtcgactctgtgggatttgccatattggtctaatttaaagctacgacacaatcttgatgttatgcatatcgagaaaaatatatgtgaggcccttcttggtacatttctcgacatcgcaggcaagtcaaaggactctgttactgcgaggctcgatttagaagatatgggcataaggaaaaatttacacttgaaggatgatgggaattcaacatgcactgctccacatgctccatatgtgatgactaaagcccagagaaaagctttctgtgctttcataaaaaatgtcaaattcccagatggatatgcctccaacttagcaaggtgtgttagtgttgatgaatgcaaagtacaggcattgaaaactcacgactgtcatatccttctgcaaaggatattaccagccggtctccgaggaatcatgcataaggaaatatatgaaacaattgctgaattaggtaactttttccagcaaatttgtgctaagaaattgaagttagatgctttgaacaagatgagaggtgaaatcccaataatattgtgcaagcttgagaagattttcccgcctgccttttttgatgtgatggtgcacttatgcattcatttaattgatgatgcaatcctaagaggtcctgttcaatatggatggatgtaccctgtagagcgtaggttgctgaccttgaaacgctttgtaaggaacatggcaaggcctgagggctccattgcagaggcatatgtcgcaaatgagtgcttgactgcttgctcaaggtattttgctgatgttgacactaggcacaatcgtgagggtaggaacaaagagcgtgttcctatgagtagatgtggtttatctattttccagcatggagcaaatctgttgggggcaccaaggcttacatat
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| Protein seq | MQQLARVEHVRPGNHPNNKKRKRVEEGQCWKRRSTLWDLPYWSNLKLRHNLDVMHIEKNICEALLGTFLDIAGKSKDSVTARLDLEDMGIRKNLHLKDDGNSTCTAPHAPYVMTKAQRKAFCAFIKNVKFPDGYASNLARCVSVDECKVQALKTHDCHILLQRILPAGLRGIMHKEIYETIAELGNFFQQICAKKLKLDALNKMRGEIPIILCKLEKIFPPAFFDVMVHLCIHLIDDAILRGPVQYGWMYPVERRLLTLKRFVRNMARPEGSIAEAYVANECLTACSRYFADVDTRHNREGRNKERVPMSRCGLSIFQHGANLLGAPRLTY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0006891 | OsKeNa_08g0006891.01 | Chr08 | 6368677 | 6373967 | + | IsoSeq | ||
| CDS seq | atgcagcaattggcgagggtggaacatgtaagacctgggaaccatcctaataacaaaaagagaaagagggtagaagaaggtcaatgctggaagcgcaggtcgactctgtgggatttgccatattggtctaatttaaagctacgacacaatcttgatgttatgcatatcgagaaaaatatatgtgaggcccttcttggtacatttctcgacatcgcaggcaagtcaaaggactctgttactgcgaggctcgatttagaagatatgggcataaggaaaaatttacacttgaaggatgatgggaattcaacatgcactgctccacatgctccatatgtgatgactaaagcccagagaaaagctttctgtgctttcataaaaaatgtcaaattcccagatggatatgcctccaacttagcaaggtgtgttagtgttgatgaatgcaaagtacaggcattgaaaactcacgactgtcatatccttctgcaaaggatattaccagccggtctccgaggaatcatgcataaggaaatatatgaaacaattgctgaattaggtaactttttccagcaaatttgtgctaagaaattgaagttagatgctttgaacaagatgagaggtgaaatcccaataatattgtgcaagcttgagaagattttcccgcctgccttttttgatgtgatggtgcacttatgcattcatttaattgatgatgcaatcctaagaggtcctgttcaatatggatggatgtaccctgtagagcgtaggttgctgaccttgaaacgctttgtaaggaacatggcaaggcctgagggctccattgcagaggcatatgtcgcaaatgagtgcttgactgcttgctcaaggtattttgctgatgttgacactaggcacaatcgtgagggtaggaacaaagagcgtgttcctatgagtagatgtggtttatctattttccagcatggagcaaatctgttgggggcaccaaggcttacatat
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| Protein seq | MQQLARVEHVRPGNHPNNKKRKRVEEGQCWKRRSTLWDLPYWSNLKLRHNLDVMHIEKNICEALLGTFLDIAGKSKDSVTARLDLEDMGIRKNLHLKDDGNSTCTAPHAPYVMTKAQRKAFCAFIKNVKFPDGYASNLARCVSVDECKVQALKTHDCHILLQRILPAGLRGIMHKEIYETIAELGNFFQQICAKKLKLDALNKMRGEIPIILCKLEKIFPPAFFDVMVHLCIHLIDDAILRGPVQYGWMYPVERRLLTLKRFVRNMARPEGSIAEAYVANECLTACSRYFADVDTRHNREGRNKERVPMSRCGLSIFQHGANLLGAPRLTY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0006891 | OsKeNa_08g0006891.02 | Chr08 | 6371637 | 6373969 | + | IsoSeq | ||
| CDS seq | atggagaacaaatcgatgaagacctatatgcattggcaagtctaccacttcttagagttcgtatattttcaggatgtattgttgatggtgtccgatatcacaccgtggaacgtgagagcagtagaagaacacaaaacagtggagttatggttgagggcacacataatggagaag |
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| Protein seq | MENKSMKTYMHWQVYHFLEFVYFQDVLLMVSDITPWNVRAVEEHKTVELWLRAHIMEK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 6372086 | 6373104 | + | OsKeNa_08g0006891.02 | OsKeNa_08g0006891.02,OsKeNa_08g0006891.01 | All |
| A3 | Chr08 | 6372086 | 6373104 | + | OsKeNa_08g0006891.02 | OsKeNa_08g0006891.01,OsKeNa_08g0006891.02 | IsoSeq |
| A3 | Chr08 | 6372086 | 6373104 | + | OsKeNa_08g0006891.02 | OsKeNa_08g0006891.02,OsKeNa_08g0006891.01 | Root |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.142705 | 2.288810 | 3.098591 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0208400 | RBH | 1.579902 | 0.930890 | 2.757736 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10740 | RBH | 1.059526 | 0.610228 | 0.691897 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0208400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007100 | RBH | 4.761783 | 2.040762 | 28.404123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0061700 | RBH | 0.0189785 | 0.015115 | 0.0274325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0087600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
