Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_08g0001520 | OGI:05051730 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:1199785-1205408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagagtggaaatcaccctacggatgatggcagtccaacacaggacaggtaagaatcaccctaaataccttaatcgtttgtgattgactcctgcaaactgcgacaattatgaactgattttcatatccaattttaacagttcaaacttgactgctcgagccaattcaaaggaattatcgcggttagcaagatcgaaaaGgaaaagaaaactagacctgagaaggagcggatctccatcgaccaaaaattactccagtgcggatgaaacaaatgctcttcaaaggtaaacactcaagttatcatcacaattactaaaaaggaaatgcgtcatatttaacaaggatatgccaacatttaccaggaaaagaaaacttgatgaaaaaaggactgggtttcaaatgagcaacaatgagtcaagcgcagacacaggaaatcccctgcaaaggtaaaattataggcgaagaatacaattacctatgaaggtcctgtatttaataacaatttatttcaaccgcaacaattatgaactgattttcagatccaagtttaacagttcaagtgtatgtatttaataacaattaatttccgaataggtacaatacatcagaatcagtcaaaaaaaagttgttatatccctgttttgacatccaattttcacagctcaaacttcactgctgaagtaaactcaacggaactcgcacgcttatcaagactgaacaggaaaaggaaacttgaccttagaagaagcggatctacattgaataacagttcgacctgttcaaatccagcaaatcacattgaaaggtaaacatacagaaaatcaacaccattgttagaaaggaaatttttccttattcaacaataaacactgactgtgatatgaataaaatcaggtctagaaaagaaaaatatcagatcccatcaaccaacatggaaacgaataggtatgttaaccacattataaaaatgatatcgtcattcagtttatttttaaatcacttttttcttttatgaaaaaaatatttgtcttccagtctcaagatgaatgatcgagtaagtaaggaaggaaacattacaaggaataaggttgctgtaccaccaaggaagaagaaaaaatcaagcgtgaaagaatggaattttggcaagcctacatgcacatgtcaacactgtggtgcacttttctggtatgaagaaagaactcgtggcaaaggaaaagggccaccttcttttagcttatgctgcaaacagggcaaggttgacttacctacactaaagaaaccacctacttacctttcaaatctgatgtgcaaagaaaaaggaaagagatcgaggaactacatggacaatatcagagtatataactccatgtttgcatttacctccatgggaggaaaagttgacagagagataaacaatgggtctggaccatatgttttccgcatgaatggccagaactaccaccgaataggtactctactgcctgaagaaggcgataaacctcgctgggcgcaactttacatctatgacactgagaacgaagtcaaaaacagaattgacgcatcaacatcatcccataatagagaatcaatagattcacacattgtcttaggcctaaagaacatgctggacagagaaaacgtactagcacagacattcagaatggcaagagatagattcaaagaaggtgactatcataatgtaagcctacgacttataaggaagcgtggtggagatggcaggcagcataacatgccatcggcatcggaagtggcagcactgattgttaatgacacgagtgagaaccaaaaggacgtgacataattgttcattataaagacacagggcccagaagaatatcagaaaaccatccaaaattcatggcaatgcagtacccgttgctatttccctatggagaagatggcttcacaaacaaaatattgtacagagataaccatggatccaaatgcaagagaaaacatttgaccatgctggagtactatgcttatcgcatacaacagcgcaaaaatcaatgtatgcacttgctaatgtgtgaaaaattgacgttgcagttcattgttgatgcactagcgtgcataatccaatataggctggactggataagaaaacatcaagggaatcttagaactgaactgtatgctggcttgcaggatgcaattgaaaggggtgacacaagagctgaacaggttggaaaaaggatactacttccttcatctttcacaggcagcccaagatacaaggcacaaaactaccaagatgctatggcaatatgtcgttgggcaggatacccagacctgtttgtcactttcacgtgcaacgctgcttggccagagatacaaaatatgctagatgaaataggagttcagaaaccatcagatagacctgacattgttgaccgagtattccatataaaattgagggaattgatgacagacataaaggacaagcaatactttggaaagactcttgcaagtaaaaatcctaaacccgcatattcattagttcgaatttatttaattttaaaaaggaactaacaattgtccatcttaatgcagttatatacacaattgagttccaaaagaggggacttccacatgcccatatactaatcttccttgacaagaaagacaaatgcccagacgcttcagagatcgatagaataataagtgcagagatcccagacaaggaagaagaccgcgaaggatttgaagctgtggaaaatttcatgatgcacggtccatgtggagaggcaaagtcaaattcaccatgcatgatagagaacaaatgcatcagaaatttccccaagaaattccacagtgaaacaaccgtggatgaggatggattcccaacatacagaagaagagacaatggcaggtacatagagaaaggaaacgttaagctagacaacagatatgtagtcccttacaatagagacttgctggtaaagtaccaagcacacataaatgtcgagcggtgcaatcgatctaagtcaatcaaataccttttcaagtacatgcataaaggcgacgaccaagcaacagccctaatcgaatctgatcatgatgagatcaataagtacctggaatgcacgtacatatcaggacatgacgcatgttggcgaatattccaatttgagatgcactatcgatatccatctgttgagaggctaccattccacctggagaacgaacagcaagttattttcccagactcggcagacttaaggaagattgtaagaaaagaaagaataggagtcactaaatttacacagtggatggaaacaaacaagatcaatgatgaagcaagggacttcacttatgctgaattcccatcaaaatgggtatggaagaacaaactaaaacagtggaacaagcggaaaaaaggaaaaatgattggtatgatctactatgcacatccagcaagcggagataaatactacctaaggatgctactgaacacagtgaaaggacccagaacattcgaagaaatcagaactgtagatggagttgtacacccatcattcaaattagcttgcgaagcattaggatttcttgacgatgacagggagtgggTtgaatgcatccgagaggcatccaactacgcatcagggaaccaactacgacatcttttcacaacaattttatgtcactgtgaggtaactgatccgaagagaatatgggaaagctgtttggaggatctaggtgaagacatagaatacaaacagagaaaaaatctcaactatcctacgcttcgcctaacagagcaacaaaaaagggacatgctctgatagaaatagaaaagctgatgagacaagctggaaaaacacttgaggaataccctgatatagagctaccaaaatgtgctgaactacgggaacttggaaacagacttctgaatgaagaaatgagctatgacaaagacaagcagaaagaggaacatgatagcatatttggtaaacttaatgcagaacaaaaggtagcatttgattcaataatagagtcaaccaacaaggggttgggaaaactaatgtttgtcgatggctacggtggaacagaaagacttacctgtggagagctatcacaaccaaactacgttcagaaggaaagaatactcacggttgcatcatgtggtatagcagccttacttcttcatgggggaagaacagctcactcaagattccacatcccactaattgttacagaagagtcaacatgtgacatcaaacaaggatcgcacctggcggaactacttaaaaaaacatcactcatactgtgggacgaggctccaatggcaaacagaatttgcttcgaggcgctagacagaagtctaagggacatactaaggtccaagggtgaagataacagcacaaagccattcggcggtatgactgtggttctaggaggagacttccgccagattcttcctgttgtgcgaaagggaagacgcacgcaaatagtaaatgcatcaataaaacggtcctacctatggcagcacttccacatcttcaaacttacaaggaacatgcgcctgagctgcatctcaagagatgaagacgagcaaaaaaggactgcagatttcgcacaatggattttgaacattggtgatggcaaaacaacatcagcggatggagaggaatggatagaaatacctgatgacctgatactgaagaaaggaggtgatccaaaggaagaaattgtgaagagcatatatccaaacttggtacagaattataagaaacgagatttcttagaacagcgagcaattctatgcccaagaaatgagacagcgagggaaattaatgaatttataatgaacatgatagaaggagaggagataacatatctgagctgcgacactgtatgcaaagcaacaactaatgacagtgaaaccgatgtcctatatccaacagaatttctaaatagtctaaacttccctggaatgccaaaccatgtgctgaaactgaaactaggccttccagtgatgctactgcgaaacattaaccaaagtacagggttatgtaatggtacacgaatgaccattactcagctcgggaaaagattcattgaagcacagatcataacaggaacacatgtaggagaaaaggtatatatccctagaataataatgacgccaacagagtcaggatggcccttcttgctaaaaagaagacaatatccactcagtgtgtgcttcgctatgaccatcaataaaagccaaggacagtctctaaacatggtaggactatatctgcctaagcaagtattcacgcatgggcagctctacgtaacgttctccagagttacaagacgagatgggctacggataatgctagatgacaatgaaagcccaggtgaacatatggtcaggaacatagtgtacaaagagattttctagaaggtattatatcattctcattcatctatattgatcatacaaactatgttgcaaactactcatgggtaccttatcattgtaaatattcattgcagctgctctattcctgcttctctccagtacaacattgattgtgctacaacatactctagcgaaaggctgcaattcaaaattaccatttacagtgagtatttttaccagctgaaatag
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| CDS seq | atgcagagtggaaatcaccctacggatgatggcagtccaacacaggacagttcaaacttgactgctcgagccaattcaaaggaattatcgcggttagcaagatcgaaaaGgaaaagaaaactagacctgagaaggagcggatctccatcgaccaaaaattactccagtgcggatgaaacaaatgctcttcaaaggaaaagaaaacttgatgaaaaaaggactgggtttcaaatgagcaacaatgagtcaagcgcagacacaggaaatcccctgcaaagctcaaacttcactgctgaagtaaactcaacggaactcgcacgcttatcaagactgaacaggaaaaggaaacttgaccttagaagaagcggatctacattgaataacagttcgacctgttcaaatccagcaaatcacattgaaaggtctagaaaagaaaaatatcagatcccatcaaccaacatggaaacgaatagtctcaagatgaatgatcgagtaagtaaggaaggaaacattacaaggaataaggttgctgtaccaccaaggaagaagaaaaaatcaagcgtgaaagaatggaattttggcaagcctacatgcacatgtcaacactgtggtgcacttttctgctgctctattcctgcttctctccagtacaacattgattgtgctacaacatactctagcgaaaggctgcaattcaaaattaccatttacagtgagtatttttaccagctgaaatag
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| Protein seq | MQSGNHPTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADETNALQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFTAEVNSTELARLSRLNRKRKLDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGNITRNKVAVPPRKKKKSSVKEWNFGKPTCTCQHCGALFCCSIPASLQYNIDCATTYSSERLQFKITIYSEYFYQLK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_08g0001520 | OsKeNa_08g0001520.01 | Chr08 | 1199785 | 1205408 | + | NAM | ||
| CDS seq | atgcagagtggaaatcaccctacggatgatggcagtccaacacaggacagttcaaacttgactgctcgagccaattcaaaggaattatcgcggttagcaagatcgaaaaGgaaaagaaaactagacctgagaaggagcggatctccatcgaccaaaaattactccagtgcggatgaaacaaatgctcttcaaaggaaaagaaaacttgatgaaaaaaggactgggtttcaaatgagcaacaatgagtcaagcgcagacacaggaaatcccctgcaaagctcaaacttcactgctgaagtaaactcaacggaactcgcacgcttatcaagactgaacaggaaaaggaaacttgaccttagaagaagcggatctacattgaataacagttcgacctgttcaaatccagcaaatcacattgaaaggtctagaaaagaaaaatatcagatcccatcaaccaacatggaaacgaatagtctcaagatgaatgatcgagtaagtaaggaaggaaacattacaaggaataaggttgctgtaccaccaaggaagaagaaaaaatcaagcgtgaaagaatggaattttggcaagcctacatgcacatgtcaacactgtggtgcacttttctgctgctctattcctgcttctctccagtacaacattgattgtgctacaacatactctagcgaaaggctgcaattcaaaattaccatttacagtgagtatttttaccagctgaaatag
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| Protein seq | MQSGNHPTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADETNALQRKRKLDEKRTGFQMSNNESSADTGNPLQSSNFTAEVNSTELARLSRLNRKRKLDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGNITRNKVAVPPRKKKKSSVKEWNFGKPTCTCQHCGALFCCSIPASLQYNIDCATTYSSERLQFKITIYSEYFYQLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41190 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000910 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022750 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0003400 | RBH | 0.0226585 | 0.034684 | 0.0071425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018110 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0003400 | RBH | 0.086495 | 0.0412275 | 0.0571435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000380 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004530 | RBH | 0.0 | 0.0 | 0.0 |
