Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0024230 | OGI:07072200 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:26679265-26681813 | ||||||||
| Gene Symbol | BHLH1, OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 | ||||||||||
| DNA seq | tacagaataatcaaagcatttcaaacttttctgaatgtcacctatttgaccacttaaaactgagattcagatatacagattaggtgctacccatgagcacagtcgcagatctctgtttcacatttgctaaacttgcaaagttaaacgttgaaactaaaggaattctcaaatcattgtgtggacctctcgttatgtagtgtacctaagatctacctatacggtcttcctcgttagtgccagaagtaccactgctacattgttgatcttgtcttcctggaaacactggaaacaggtttactggcaaagtggccgttggtgttgggtaccttggctgaggccgtgttacatggtcagaaatcccgtgttcttgtgacggttcgctgtcttcgctggtcgcagactcagggaagagctgaagttctcttggcgtggcggcatagtgctgctcgatgataaccggtagctgctgaggaaatgctgccgtcgtggtgactggtaaatgtggcaggtgctgtactgggaacactccggttgtcggataaggtaccctgagagctggtctggtgtttacatgactccaaacaggattgccttccatccgcgtcctaagctcgttttgaagctccaagatttcagtacgaagcatgctgttatcgtcgtgcagttcatttctctccaatgcaacctgttttgcagcatggaaagtaggattatgaatcagtagtaaggtggctttgttttctaagtaatgataattggagccctattctaagaaactcttatcatgatcatatgtactactctacatttttccatatccatggtattattactaaccagaccatggccatcaaattaattgaaggagaacaattgagctaatattttgcaagaagacaaataggacattcaattcggaagagcttacataatgagattcattcttcagtgaactattctccttccggagagattccacttgtgaaagtaaatcttttagtattcgtgtagtttcacccagtacacatgccttcccattgttctgcctgtcaggttctggaaaggagtttgcacgttgcttaggaaaatataattccgcatgcaaaaacgatgcagttttgaaactgagacaactaaaaattaattagacaaatgatacttgcactcactataactgctgctttttttttcctttttgtattttacgtaaagggaaaagttaggttgtggcagatgaaaatgtaaatactgctaaatcaatttcagctgctatatttctagtagtaactcgtccagagagtttgtaatatccatcttaaaatttagtaatagataagaacaaactactcctacaagattataaatggatgtctctagcagtattgaaagtatgtacactagatggaatgacataaataagcatatttcagaaagaaaaatccaaatgttgcaatgcaattgtgcaatctgaatcatgtttatggattcgcaattacgaaacaaacacatacctagcaagtttcccagctcattaaagaggtcattctgcttgtcccgcttaagtttctccctctctgatttatggattctctttggagccttcttatcacacttcttgttcactataccgctgcatagaaagttcaaacatcagtgtgattgtaaagcagtttggacaaaaatattccttcatggaacacctcaagatgaagtaaggaattgcttttcgatttgtagtagttctggtagttaaccccattgcagcaattaaatttgcagtgctacaaaaatataaatggtccaaacacaacaacaacattatccatctggcttttaagttcgtaaattaaaatatgagaattctttaatctgtatggcagaaactcaaattaggctcctccaactccaaaattggacgcacatgatacacatcaacagggcctaaaagcattatttccatctcatggtttacgtctctcataaaaccaactcataatatgtcaaaaaaaaacactactaaatttccacttcgtcccaaaaccaagagagctaagagcaacccaacccaatccatccagttcatactttttcccccctcatcctcacaaagcgacgaagccatacacgcccccctaggaaagcaacaacgactcacctctggaccagcctcccctcgccgccgccaccagcggcagcggcattcaccctgtccctgggcaccatctcgacctccccctgaaacttcccaatcaatcgatcaatcaaacaaactctggtcaatttccccccaccgcgcggtgcagctccggttacctcccagatcggagccgcggcggcctcccggttcgagggttccttgcgctacttgtcttcgtcgtcttcctcctcggcctcggcttcctcggctcgtggctggctgcagtggttgggtggttgcacgaggaggagggggaaagaatgggagaaaacgatgggagggcggcgtgcgacgcgcccgcagtttgggcgagcgacggtgacgcgcgtggggtgggcgcgtggacgccacc
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| CDS seq | atggtgcccagggacagggtgaatgccgctgccgctggtggcggcggcgaggggaggctggtccagagcggtatagtgaacaagaagtgtgataagaaggctccaaagagaatccataaatcagagagggagaaacttaagcgggacaagcagaatgacctctttaatgagctgggaaacttgctagaacctgacaggcagaacaatgggaaggcatgtgtactgggtgaaactacacgaatactaaaagatttactttcacaagtggaatctctccggaaggagaatagttcactgaagaatgaatctcattatgttgcattggagagaaatgaactgcacgacgataacagcatgcttcgtactgaaatcttggagcttcaaaacgagcttaggacgcggatggaaggcaatcctgtttggagtcatgtaaacaccagaccagctctcagggtaccttatccgacaaccggagtgttcccagtacagcacctgccacatttaccagtcaccacgacggcagcatttcctcagcagctaccggttatcatcgagcagcactatgccgccacgccaagagaacttcagctcttccctgagtctgcgaccagcgaagacagcgaaccgtcacaagaacacgggatttctgaccatgtaacacggcctcagccaaggtacccaacaccaacggccactttgccagtaaacctgtttccagtgtttccaggaagacaagatcaacaatgtagcagtggtacttctggcactaacgaggaagaccgtataggtagatcttag
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| Protein seq | MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPVFPGRQDQQCSSGTSGTNEEDRIGRS |
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| Function | Transcription factor BHLH062 [UniProtKB/Swiss-Prot:Q69V10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0024230 | OsKeNa_07g0024230.02 | Chr07 | 26679265 | 26681813 | - | NAM | ||
| CDS seq | atggtgcccagggacagggtgaatgccgctgccgctggtggcggcggcgaggggaggctggtccagagcggtatagtgaacaagaagtgtgataagaaggctccaaagagaatccataaatcagagagggagaaacttaagcgggacaagcagaatgacctctttaatgagctgggaaacttgctagaacctgacaggcagaacaatgggaaggcatgtgtactgggtgaaactacacgaatactaaaagatttactttcacaagtggaatctctccggaaggagaatagttcactgaagaatgaatctcattatgttgcattggagagaaatgaactgcacgacgataacagcatgcttcgtactgaaatcttggagcttcaaaacgagcttaggacgcggatggaaggcaatcctgtttggagtcatgtaaacaccagaccagctctcagggtaccttatccgacaaccggagtgttcccagtacagcacctgccacatttaccagtcaccacgacggcagcatttcctcagcagctaccggttatcatcgagcagcactatgccgccacgccaagagaacttcagctcttccctgagtctgcgaccagcgaagacagcgaaccgtcacaagaacacgggatttctgaccatgtaacacggcctcagccaaggtacccaacaccaacggccactttgccagtaaacctgtttccagtgtttccaggaagacaagatcaacaatgtagcagtggtacttctggcactaacgaggaagaccgtataggtagatcttag
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| Protein seq | MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPVFPGRQDQQCSSGTSGTNEEDRIGRS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0024230 | OsKeNa_07g0024230.01 | Chr07 | 26679265 | 26681813 | - | NAM | ||
| CDS seq | atggtgcccagggacagggtgaatgccgctgccgctggtggcggcggcgaggggaggctggtccagagcggtatagtgaacaagaagtgtgataagaaggctccaaagagaatccataaatcagagagggagaaacttaagcgggacaagcagaatgacctctttaatgagctgggaaacttgctagaacctgacaggcagaacaatgggaaggcatgtgtactgggtgaaactacacgaatactaaaagatttactttcacaagtggaatctctccggaaggagaatagttcactgaagaatgaatctcattatgttgcattggagagaaatgaactgcacgacgataacagcatgcttcgtactgaaatcttggagcttcaaaacgagcttaggacgcggatggaaggcaatcctgtttggagtcatgtaaacaccagaccagctctcagggtaccttatccgacaaccggagtgttcccagtacagcacctgccacatttaccagtcaccacgacggcagcatttcctcagcagctaccggttatcatcgagcagcactatgccgccacgccaagagaacttcagctcttccctgagtctgcgaccagcgaagacagcgaaccgtcacaagaacacgggatttctgaccatgtaacacggcctcagccaaggtacccaacaccaacggccactttgccagtaaacctgtttccagtgtttccaggaagacaagatcaacaatgtagcagtggtacttctggcactaacgaggaagaccgtataggtagatcttag
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| Protein seq | MVPRDRVNAAAAGGGGEGRLVQSGIVNKKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTRPALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQLPVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPRYPTPTATLPVNLFPVFPGRQDQQCSSGTSGTNEEDRIGRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 26681420 | 26681813 | - | OsKeNa_07g0024230.01 | OsKeNa_07g0024230.01,OsKeNa_07g0024230.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 8.806581 | 1.073159 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0628500 | RBH | 0.501940 | 0.823604 | 1.463997 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43530 | RBH | 0.311514 | 0.508372 | 0.359658 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0628500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024180 | RBH | 0.000000 | 18.695728 | 0.478287 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019570 | RBH | 3.651438 | 28.875175 | 1.189850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024100 | RBH | 0.0 | 11.824387 | 1.172176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024020 | RBH | 0.0 | 0.048035 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024150 | RBH | 0.0 | 12.397644 | 5.829698 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0427600 | RBH | 0.6930555 | 8.41766 | 4.0414135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024670 | RBH | 0.0 | 2.017032 | 0.098754 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0438500 | RBH | 1.116155 | 3.2572165 | 5.6563355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023920 | RBH | 0.0 | 1.372016 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024070 | RBH | 0.000000 | 22.931200 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023990 | RBH | 0.0 | 54.047447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024180 | RBH | 0.0 | 1.682627 | 0.183873 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023930 | RBH | 0.0 | 5.330229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023870 | RBH | 0.126032 | 0.827074 | 1.810427 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023890 | RBH | 0.0 | 13.889254 | 2.037550 |
