Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0022460 | OGI:07068640 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:25408851-25412695 | ||||||||
| Gene Symbol | PTR4, OsPTR4, OsNPF7.1, NPF7.1 | ||||||||||
| DNA seq | tagagatggtacggggcaatggcgtggtggctagcgtcagggaaaataatatggagacaacaccgtacgatgacatttaccttgagccctcagatttaaggctgcgtggatttcctcgggaggacatcgtcacctcatcaccgggagcatacaagagagaagagtggatatgcgcgttgtgaattttcgatgtttcaggcagcacatacggatgtttctcgtatttcgatcaaaatgttaaagtggggattttgatggcgtttctttttttttttttgtggcacagttcctcagcaagacaagcgcacggcttcacccactcacctactacctctgcgttgtttcgccccgtctgctagcgcggcgggtcgttgtcttcttcatcaacaggaggcggcaagtagccaagtaggaggcatccccatagtcgcgcaaccttacctccggatcttcgtattatattgttttatattgtttcttcttcttcttcttcttcttcttcttcttcttcttcttgtttgtgtagcaagtagcaacggagtctcagatcagattagccgccacaggggaggggagaccatggacgaggccgccgccggccaacgcgccagtcctcttcttgccaaggtacggcgaaccgcggaaactgctaatccccgcaggcgcctatcctgaccttttcctcttgtatatatgtgtgtttcttgctttgctgccttatggggtttcaggggaagcagaatagtatgatgcaaagattgtggctttaccgatcaagatttggtttttactacagttgggtgtggggatgtgagctggagtaaatttttttgttgttgtttttttttttaaagaagaaaatgcaaatcgtagtctgaaattgagaaaagaaaaatgcgatgactgataactgctacctggatactgatctttgatgttgataaggattatgaaaccccgaagatgtctagtgcgtatttcattccgtcggtggatttggtcaaagaatgttgagttttagattgttgtaccttgttttggaacgcgaaattttgcagatcgaataagctgttttcgatctactcaatcacattgcggtgtttatgctgacgtctggccttctgtcagaatgatggatcaagctatggtgaagaatcacagagtttattggaagaacaggagccacaggttaaaactaaacaatctggctggagagcaccatcaatcattctgggtgagccttgttatataagcatacccttcttctcgtaaaatcaaaatcttctctccatcgaaaactgtgtgaaaaccaattcatatatagagggattggagcacccatcggtgcatcactatataaacattctttaccatgatgccacaactaatgctcacaaatcatgcaggacttgaatgcttggagagcatggctttcaatggcattgccacaaatctagttgtgtatattcgctcagttctccatggtggcatcgcttccagtgcttcaacttcttctctttggtacggtactagtttctttgtgcctatacttggagcaaccattgcagatacttactggggaaactataagacagtcttgatctcctttatcatgtatttacttgtaagatcagttttcctgctcaactgctcaatcttattcacatttcattgaacaattgaactactccagagtcaagatgatgcatttttgttgtagaaaggtcataatgaaataccgatgcacatttcagggtacggtattcattactgttggagcttttctgccttctgctccagccttatgcaacacggaatcatgctcatcaatgaatgggactcaacatctagtatacttctcaggcctgtatctcactgctattggttgtggcggagtaaggtctgcgttgcttccgcttggtgcagatcaattcaacaacgatagcagtttagatatacaaaagagaaggaatttcttcagtttattctacatttgtgttatctttggtgtgattacttctggcaccatcgtagtatggattcaggaaaatgtgagctgggctataggatatggtgttgccactgcatgcatagctcttgctctgataggctttttggtgggaacaccaatatttcggcgacatgagccccatggttctccagtaaggagtgttttccaggtcattgttgcctcttttaggaacttggccttggagcttcctgctgatagctctcttctttatgaggtcaggagaaagaacacacagaagagtgaaccaaagttggctcacactgatgatttcaggtactaatctttctttacagtatataattgagtctgagaaacgtatgacatttcccttttactatcatgctgtttcagcaccagttgattttatcatgtacatatttttctcagctgttaattactcgacaatttctgaacaaaaaacctgacatcataactcattgatgatcactcctctggttgtgtagctcatgcagcttatgcagacaaaataggaacagaaaagtatttaaagcatgaaataataaactgtaataattatttgttcagaatcgagtgtaattttaacggtgtccccctatacttgaagttggtttaattccttagataatcaacttgctaatcctagcttttgcctcagattcttagacaaggctgccattatgtctgatctgagcttggaccaagacagttgcacaagtccatggaggatctgtactgtaactcaagtcgaggaattgaaaatactaatccgtttacttccaatatgggcaaccgggatattcttttgtgttgggatctctcaaatgcacaccaccttcattcagcaggggactgtgatgaacaccaagattggctcactctccattccagcagcttccctgtattcatttgaagtgatatgcgtgacattctgggttttcctggtgaacaaagtcatcataccagtgaccagagcatgctttgcaaacggggcggaaatgacgcagctgcagaggatcggcatcgggcgattcctgatgatattcgccatggcgatcgccgcatttctagagatgaagaggctagatagcgtccaggggggcgatcagcccctgagcatcgcgtggcagctcccgcagtacttcgtcatcgctggggcggagtgcttcaccatcatcactcagctggagttcttccacggtcaggcgccggactccatgaagagcatgctgacggcattcgcgctgctcaccaccgccctcggcaactacttcagctcggcgatcatcaccctcatcgcgagggtgaccgggacatggcatagccctggatggataccagatgatctgaacaaagggcaccttgactactactactggtgtctcgcagccatctcagctgtaaatttcgttgtttacatctattttgccagtaaatacaagttgaagaaggctgtcatccaagtctaaagtttttgtaaagttaccaattgccaccacgtgaagtgtttatagattgtatatgttaaattatactccagttaggttttagaaggaccattatatcccaaaatagcttcaggttgatctgaggaagctacccgtatcggcaaatgtacttaattcaatttgtcaaaagaattatgtatccctaatgttgtaatttcacaatgagtagtagaatgatagttttacttgtgcatggaagtgagtttgaaatggaaatgttgaacatttgttcttttggatctgttgtatttagattattcctatgtacatgacagcatatttgcattatgcattatgaatatttacatgacagtatatttaggagg
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| CDS seq | atggacgaggccgccgccggccaacgcgccagtcctcttcttgccaagaatgatggatcaagctatggtgaagaatcacagagtttattggaagaacaggagccacaggttaaaactaaacaatctggctggagagcaccatcaatcattctgggacttgaatgcttggagagcatggctttcaatggcattgccacaaatctagttgtgtatattcgctcagttctccatggtggcatcgcttccagtgcttcaacttcttctctttggtacggtactagtttctttgtgcctatacttggagcaaccattgcagatacttactggggaaactataagacagtcttgatctcctttatcatgtatttacttggtacggtattcattactgttggagcttttctgccttctgctccagccttatgcaacacggaatcatgctcatcaatgaatgggactcaacatctagtatacttctcaggcctgtatctcactgctattggttgtggcggagtaaggtctgcgttgcttccgcttggtgcagatcaattcaacaacgatagcagtttagatatacaaaagagaaggaatttcttcagtttattctacatttgtgttatctttggtgtgattacttctggcaccatcgtagtatggattcaggaaaatgtgagctgggctataggatatggtgttgccactgcatgcatagctcttgctctgataggctttttggtgggaacaccaatatttcggcgacatgagccccatggttctccagtaaggagtgttttccaggtcattgttgcctcttttaggaacttggccttggagcttcctgctgatagctctcttctttatgaggtcaggagaaagaacacacagaagagtgaaccaaagttggctcacactgatgatttcagattcttagacaaggctgccattatgtctgatctgagcttggaccaagacagttgcacaagtccatggaggatctgtactgtaactcaagtcgaggaattgaaaatactaatccgtttacttccaatatgggcaaccgggatattcttttgtgttgggatctctcaaatgcacaccaccttcattcagcaggggactgtgatgaacaccaagattggctcactctccattccagcagcttccctgtattcatttgaagtgatatgcgtgacattctgggttttcctggtgaacaaagtcatcataccagtgaccagagcatgctttgcaaacggggcggaaatgacgcagctgcagaggatcggcatcgggcgattcctgatgatattcgccatggcgatcgccgcatttctagagatgaagaggctagatagcgtccaggggggcgatcagcccctgagcatcgcgtggcagctcccgcagtacttcgtcatcgctggggcggagtgcttcaccatcatcactcagctggagttcttccacggtcaggcgccggactccatgaagagcatgctgacggcattcgcgctgctcaccaccgccctcggcaactacttcagctcggcgatcatcaccctcatcgcgagggtgaccgggacatggcatagccctggatggataccagatgatctgaacaaagggcaccttgactactactactggtgtctcgcagccatctcagctgtaaatttcgttgtttacatctattttgccagtaaatacaagttgaagaaggctgtcatccaagtctaa
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| Protein seq | MDEAAAGQRASPLLAKNDGSSYGEESQSLLEEQEPQVKTKQSGWRAPSIILGLECLESMAFNGIATNLVVYIRSVLHGGIASSASTSSLWYGTSFFVPILGATIADTYWGNYKTVLISFIMYLLGTVFITVGAFLPSAPALCNTESCSSMNGTQHLVYFSGLYLTAIGCGGVRSALLPLGADQFNNDSSLDIQKRRNFFSLFYICVIFGVITSGTIVVWIQENVSWAIGYGVATACIALALIGFLVGTPIFRRHEPHGSPVRSVFQVIVASFRNLALELPADSSLLYEVRRKNTQKSEPKLAHTDDFRFLDKAAIMSDLSLDQDSCTSPWRICTVTQVEELKILIRLLPIWATGIFFCVGISQMHTTFIQQGTVMNTKIGSLSIPAASLYSFEVICVTFWVFLVNKVIIPVTRACFANGAEMTQLQRIGIGRFLMIFAMAIAAFLEMKRLDSVQGGDQPLSIAWQLPQYFVIAGAECFTIITQLEFFHGQAPDSMKSMLTAFALLTTALGNYFSSAIITLIARVTGTWHSPGWIPDDLNKGHLDYYYWCLAAISAVNFVVYIYFASKYKLKKAVIQV |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0022460 | OsKeNa_07g0022460.01 | Chr07 | 25408851 | 25412695 | + | NAM | ||
| CDS seq | atggacgaggccgccgccggccaacgcgccagtcctcttcttgccaagaatgatggatcaagctatggtgaagaatcacagagtttattggaagaacaggagccacaggttaaaactaaacaatctggctggagagcaccatcaatcattctgggacttgaatgcttggagagcatggctttcaatggcattgccacaaatctagttgtgtatattcgctcagttctccatggtggcatcgcttccagtgcttcaacttcttctctttggtacggtactagtttctttgtgcctatacttggagcaaccattgcagatacttactggggaaactataagacagtcttgatctcctttatcatgtatttacttggtacggtattcattactgttggagcttttctgccttctgctccagccttatgcaacacggaatcatgctcatcaatgaatgggactcaacatctagtatacttctcaggcctgtatctcactgctattggttgtggcggagtaaggtctgcgttgcttccgcttggtgcagatcaattcaacaacgatagcagtttagatatacaaaagagaaggaatttcttcagtttattctacatttgtgttatctttggtgtgattacttctggcaccatcgtagtatggattcaggaaaatgtgagctgggctataggatatggtgttgccactgcatgcatagctcttgctctgataggctttttggtgggaacaccaatatttcggcgacatgagccccatggttctccagtaaggagtgttttccaggtcattgttgcctcttttaggaacttggccttggagcttcctgctgatagctctcttctttatgaggtcaggagaaagaacacacagaagagtgaaccaaagttggctcacactgatgatttcagattcttagacaaggctgccattatgtctgatctgagcttggaccaagacagttgcacaagtccatggaggatctgtactgtaactcaagtcgaggaattgaaaatactaatccgtttacttccaatatgggcaaccgggatattcttttgtgttgggatctctcaaatgcacaccaccttcattcagcaggggactgtgatgaacaccaagattggctcactctccattccagcagcttccctgtattcatttgaagtgatatgcgtgacattctgggttttcctggtgaacaaagtcatcataccagtgaccagagcatgctttgcaaacggggcggaaatgacgcagctgcagaggatcggcatcgggcgattcctgatgatattcgccatggcgatcgccgcatttctagagatgaagaggctagatagcgtccaggggggcgatcagcccctgagcatcgcgtggcagctcccgcagtacttcgtcatcgctggggcggagtgcttcaccatcatcactcagctggagttcttccacggtcaggcgccggactccatgaagagcatgctgacggcattcgcgctgctcaccaccgccctcggcaactacttcagctcggcgatcatcaccctcatcgcgagggtgaccgggacatggcatagccctggatggataccagatgatctgaacaaagggcaccttgactactactactggtgtctcgcagccatctcagctgtaaatttcgttgtttacatctattttgccagtaaatacaagttgaagaaggctgtcatccaagtctaa
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| Protein seq | MDEAAAGQRASPLLAKNDGSSYGEESQSLLEEQEPQVKTKQSGWRAPSIILGLECLESMAFNGIATNLVVYIRSVLHGGIASSASTSSLWYGTSFFVPILGATIADTYWGNYKTVLISFIMYLLGTVFITVGAFLPSAPALCNTESCSSMNGTQHLVYFSGLYLTAIGCGGVRSALLPLGADQFNNDSSLDIQKRRNFFSLFYICVIFGVITSGTIVVWIQENVSWAIGYGVATACIALALIGFLVGTPIFRRHEPHGSPVRSVFQVIVASFRNLALELPADSSLLYEVRRKNTQKSEPKLAHTDDFRFLDKAAIMSDLSLDQDSCTSPWRICTVTQVEELKILIRLLPIWATGIFFCVGISQMHTTFIQQGTVMNTKIGSLSIPAASLYSFEVICVTFWVFLVNKVIIPVTRACFANGAEMTQLQRIGIGRFLMIFAMAIAAFLEMKRLDSVQGGDQPLSIAWQLPQYFVIAGAECFTIITQLEFFHGQAPDSMKSMLTAFALLTTALGNYFSSAIITLIARVTGTWHSPGWIPDDLNKGHLDYYYWCLAAISAVNFVVYIYFASKYKLKKAVIQV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0022460 | OsKeNa_07g0022460.02 | Chr07 | 25408851 | 25412695 | + | NAM | ||
| CDS seq | atggacgaggccgccgccggccaacgcgccagtcctcttcttgccaagaatgatggatcaagctatggtgaagaatcacagagtttattggaagaacaggagccacaggttaaaactaaacaatctggctggagagcaccatcaatcattctgggacttgaatgcttggagagcatggctttcaatggcattgccacaaatctagttgtgtatattcgctcagttctccatggtggcatcgcttccagtgcttcaacttcttctctttggtacggtactagtttctttgtgcctatacttggagcaaccattgcagatacttactggggaaactataagacagtcttgatctcctttatcatgtatttacttggtacggtattcattactgttggagcttttctgccttctgctccagccttatgcaacacggaatcatgctcatcaatgaatgggactcaacatctagtatacttctcaggcctgtatctcactgctattggttgtggcggagtaaggtctgcgttgcttccgcttggtgcagatcaattcaacaacgatagcagtttagatatacaaaagagaaggaatttcttcagtttattctacatttgtgttatctttggtgtgattacttctggcaccatcgtagtatggattcaggaaaatgtgagctgggctataggatatggtgttgccactgcatgcatagctcttgctctgataggctttttggtgggaacaccaatatttcggcgacatgagccccatggttctccagtaaggagtgttttccaggtcattgttgcctcttttaggaacttggccttggagcttcctgctgatagctctcttctttatgaggtcaggagaaagaacacacagaagagtgaaccaaagttggctcacactgatgatttcagattcttagacaaggctgccattatgtctgatctgagcttggaccaagacagttgcacaagtccatggaggatctgtactgtaactcaagtcgaggaattgaaaatactaatccgtttacttccaatatgggcaaccgggatattcttttgtgttgggatctctcaaatgcacaccaccttcattcagcaggggactgtgatgaacaccaagattggctcactctccattccagcagcttccctgtattcatttgaagtgatatgcgtgacattctgggttttcctggtgaacaaagtcatcataccagtgaccagagcatgctttgcaaacggggcggaaatgacgcagctgcagaggatcggcatcgggcgattcctgatgatattcgccatggcgatcgccgcatttctagagatgaagaggctagatagcgtccaggggggcgatcagcccctgagcatcgcgtggcagctcccgcagtacttcgtcatcgctggggcggagtgcttcaccatcatcactcagctggagttcttccacggtcaggcgccggactccatgaagagcatgctgacggcattcgcgctgctcaccaccgccctcggcaactacttcagctcggcgatcatcaccctcatcgcgagggtgaccgggacatggcatagccctggatggataccagatgatctgaacaaagggcaccttgactactactactggtgtctcgcagccatctcagctgtaaatttcgttgtttacatctattttgccagtaaatacaagttgaagaaggctgtcatccaagtc
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| Protein seq | MDEAAAGQRASPLLAKNDGSSYGEESQSLLEEQEPQVKTKQSGWRAPSIILGLECLESMAFNGIATNLVVYIRSVLHGGIASSASTSSLWYGTSFFVPILGATIADTYWGNYKTVLISFIMYLLGTVFITVGAFLPSAPALCNTESCSSMNGTQHLVYFSGLYLTAIGCGGVRSALLPLGADQFNNDSSLDIQKRRNFFSLFYICVIFGVITSGTIVVWIQENVSWAIGYGVATACIALALIGFLVGTPIFRRHEPHGSPVRSVFQVIVASFRNLALELPADSSLLYEVRRKNTQKSEPKLAHTDDFRFLDKAAIMSDLSLDQDSCTSPWRICTVTQVEELKILIRLLPIWATGIFFCVGISQMHTTFIQQGTVMNTKIGSLSIPAASLYSFEVICVTFWVFLVNKVIIPVTRACFANGAEMTQLQRIGIGRFLMIFAMAIAAFLEMKRLDSVQGGDQPLSIAWQLPQYFVIAGAECFTIITQLEFFHGQAPDSMKSMLTAFALLTTALGNYFSSAIITLIARVTGTWHSPGWIPDDLNKGHLDYYYWCLAAISAVNFVVYIYFASKYKLKKAVIQV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 25408851 | 25409477 | + | OsKeNa_07g0022460.02 | OsKeNa_07g0022460.02,OsKeNa_07g0022460.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.390913 | 5.299096 | 1.555451 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0603800 | RBH | 0.997980 | 0.0 | 2.155582 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g41250 | RBH | 0.428795 | 0.0 | 0.406443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0603800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022430 | RBH | 0.630937 | 16.833271 | 7.572698 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022330 | RBH | 0.471784 | 18.979568 | 8.886605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022260 | RBH | 0.058095 | 0.568141 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022410 | RBH | 3.354221 | 8.525386 | 8.483517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0405500 | RBH | 3.874715 | 15.934656 | 13.896606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022870 | RBH | 0.144470 | 1.139414 | 0.706902 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0417000 | RBH | 6.2092865 | 11.010186 | 12.9223795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022150 | RBH | 0.167638 | 0.397498 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022310 | RBH | 0.539683 | 1.981151 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022240 | RBH | 4.845278 | 16.774258 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022420 | RBH | 0.150408 | 1.070432 | 0.562304 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022140 | RBH | 0.305062 | 6.108981 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022060 | RBH | 0.435630 | 1.981006 | 2.392496 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022090 | RBH | 0.838519 | 27.627283 | 2.083699 |
