Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_07g0018220		OGI:07058990 \| 16/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr07:22048779-22052955		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK238, OsRLCK238
DNA seq		gagctcaaaactgatgcccccgtgcagcacccagaaattagtacgccgccatgcgccggcgattctcggtccttcatgccgttctcctcctcgcggcggtcgcgctgcctcacttcgccgccaggccgtggcccctacgctgcaccggcggcaactgcagtgccgggagcagctacaaatccaatctcccaacacccacgatcaaacttagcaagaacctcttcgcctccgtcgagtacagcctcctcataagcggcaccaacatcaccagcaccgacgtcgccggctacgaccgcgcggtcaccgagctcctcaacgccaccgtgcggtacgcggtggagaactccacgaggctgttcgccacgggccagcgcgtggggaacgacacggggttcagcaacatcttctccatggcgcagtgctcgccggacctgtcgccggcgcagtgccggagctgcctcgacggcctcgtgggcatgtggtggaggacgttcccgctcaacgggcagggggcgagggtctccggcccgctctgccaactgaggtccgagctgggccccttctacaccggcagcccgatggtgctgttgccgttgccggtcaaggccaacgggctcacgccggcgccgtcgctgtcgccggatgttgtgcctgccattacgggaggtgattatacttccttgtcgctcatgctgtctcaatttttcagtcttcacgtcatcatcgcacataagattctctcgtccaatttgtgcacattacattcttcaccgagaacaagaagatgatgtagaagggagttaatcccccgtattgtttcctccatacatctaaattaatcagagtcagatgccatgtttaaaagataatatcgttatatatatttaaaaacaaaggaggtatatataatactatatatgtcaatcaatgctcaataggtttgtaactcggactctgatcataaacggattgcaagatgctaattgttttcttttgtcggcatatataatacatataactaacggcacgaagaactctatttggttcattgagcagcagctagcactgtattattgtaatcaggtgctcagatcggagatgcagtgcttcacatactttaactgattatgttaattacctgcaaaaatgcaggtaagcgtaattcagcaagcaaaattctggtaattatcattccaatacttgccgttgcaatcctagctgcaatttccctctgtatatggaatatgtgtaagaaggtcagatcgagaaaagccgcaaaacgtttctccagacgtgagtcgttttctactcgtttgccataaattcctgtcaaattccatttaacattcttaataatcagtatccactaaaattgttaatttgccaggtgatgaagttgaggaatttgaaagttttaggtcaaccttattatctctgacatcagtacaagtggcaacagataacttccacgaaagcaagaaaatcggtgaggggggcttcggcgcagtttataaggtatggcagtagactttcggtctaacttttgaatcattgttgatttaaccgtgtaattcaacattttcgaaaaataaattccaaatgtaccagggcactagtgctcagttgttaagtttttctaaaatttactagctgctgcacctgcctgcctaacaggcccatggttgcaggtttgacatgtaggccccaacagaccctcggtttcatatatcaatgagcgatctcaattgaacaagtctatatataagtaagaaaataagatatttaactaaattatatagggacttctttccggacaagaagtggctgtgaagaggttggtgaagggttcagaccaagaggggcaggaagaggtaaaaaatgagctaactctgatggtcaaccttcatcacaggaatcttgtccaacttgagggtttttgcctagaggcaggagagaggctgcttgtatatgagtacatgcccaacaagagtctcgacacgtttctttttggtacgatcaacatgacctttgaatgtagatcgatgtagcatacttttttcgtgagcagtactaaacttttttttacatatcctctcttactgtaaagttagagcccactacatcctaagacttaacatgcaaagataccatgtcgtcatacactaacaattagtacatttaaacatcatacaagcatgctatattatctataattttttaatttattaaagtttatagcttttcaaatgcaaacatgttaaatatttcaacatgttaaatcatcatatcacataattcatataatatttcaacatgtctcttcatcttctctttataatatatcttttatatatacttatatagttcatcctaactccgaacttagttaatgtgctctttctcttcttttattaagccgtattacatcaattgttttgtccttagatgattatgtaaggtccaaattatcttcctccttttgttctcttattaagtcatatcatatcaattgtttgtagcccttagatgattaatctatgatccaagctatctctctccttttcttctctcataaagccacatcaacttacttttacatttaaattattatttttatatactatttaaatttaaattatcataaaccagacttacaaaccacatcaacttacttaagtttatattgtctagctatcttacacattacttttacttagtgctatcatactaaactcccgcaacaaaacgtggggtttcacctagttaaattatattatggatgtcaataaatgatctcttcatctggtgttgatgagtagacacagagcaaaggaagcgactagattgggcaacacgatacaagatcatagaaggcgttgctcgaggattgcagtatcttcatgaggactcccaaaagaagattgtccaccgtgacatgaaggcaagcaatgtcttgctagatgcaaatatgaatcccaagattggcgattttggccttgctaggctcttccaacagggccagactcgagatgtcaccgaccgtatcgtcggtacattgtaattaagtcgaacacttgatctattttttgcacttggacttcaccttacctagaaatttaaccatgctacttctccctttgctatatgcagtggctacatgcctcctgagtatatgatgtgtggacagtattctacaaaatcagacgtgtttagctttggcattcttgtcatcgagatcgtgacaggccggaggaacaatgagcctgatttctctgaggaaaatgaagaaatagtgagcattgtgagtacacgtgctaattaactcatatagcaatacaccatattgctttgctttgtgtacttgcattttgtagataggtatatatggtcaccaatatcgtcattactactgatttatgaagacatatatgtgactatattgctaggtacgaaagcattgggaagacggaacaactgcagagatggtagaccattctttggaaagaaactattcagaatcagagatgctgaaatgcgtcaacattggacttctgtgtgcccaggagaaccctatagaccggcctacaatggcgcatgttatggttttgcttaacagtgattctacctgtttccttgatgctcatgcgaggccaacatatttcatggatgggagctctagttatccttccgaaacacaatcctctactgagtaataggggctaaagcagtgctatcgacaagttaagagttctgtggagattatgggtaccaaatacccacatgacatggatatctgactagttaaggggtaccttattgtggagattatggatatcccatatctacacggcgatgatatttggactgaatataggataccgaatatagatagaatatcttatttgtatctcgggtttgtttctcaacttgtacatcaaggaaataccttgagacttagtcggttacgactgtattttatctgtatctgcctattccgttagggatatagattatcttttgtaacacggactccttcccatatataaggggggtccgggtgcctctaggggcatgtgttgattttctccaaatcatacaatcaataagatactcggcggattcatccccggacaggagtagggtattacttcttgaataagaaggcctgaacctgtat More
CDS seq		atgcgccggcgattctcggtccttcatgccgttctcctcctcgcggcggtcgcgctgcctcacttcgccgccaggccgtggcccctacgctgcaccggcggcaactgcagtgccgggagcagctacaaatccaatctcccaacacccacgatcaaacttagcaagaacctcttcgcctccgtcgagtacagcctcctcataagcggcaccaacatcaccagcaccgacgtcgccggctacgaccgcgcggtcaccgagctcctcaacgccaccgtgcggtacgcggtggagaactccacgaggctgttcgccacgggccagcgcgtggggaacgacacggggttcagcaacatcttctccatggcgcagtgctcgccggacctgtcgccggcgcagtgccggagctgcctcgacggcctcgtgggcatgtggtggaggacgttcccgctcaacgggcagggggcgagggtctccggcccgctctgccaactgaggtccgagctgggccccttctacaccggcagcccgatggtgctgttgccgttgccggtcaaggccaacgggctcacgccggcgccgtcgctgtcgccggatgttgtgcctgccattacgggaggtaagcgtaattcagcaagcaaaattctggtaattatcattccaatacttgccgttgcaatcctagctgcaatttccctctgtatatggaatatgtgtaagaaggtcagatcgagaaaagccgcaaaacgtttctccagacgtgatgaagttgaggaatttgaaagttttaggtcaaccttattatctctgacatcagtacaagtggcaacagataacttccacgaaagcaagaaaatcggtgaggggggcttcggcgcagtttataagaggttggtgaagggttcagaccaagaggggcaggaagaggtaaaaaatgagctaactctgatggtcaaccttcatcacaggaatcttgtccaacttgagggtttttgcctagaggcaggagagaggctgcttgtatatgagtacatgcccaacaagagtctcgacacgtttctttttggcgttgctcgaggattgcagtatcttcatgaggactcccaaaagaagattgtccaccgtgacatgaaggcaagcaatgtcttgctagatgcaaatatgaatcccaagattggcgattttggccttgctaggctcttccaacagggccagactcgagatgtcaccgaccgtatcgtcggtacatttggctacatgcctcctgagtatatgatgtgtggacagtattctacaaaatcagacgtgtttagctttggcattcttgtcatcgagatcgtgacaggccggaggaacaatgagcctgatttctctgaggaaaatgaagaaatagtgagcattgtacgaaagcattgggaagacggaacaactgcagagatggtagaccattctttggaaagaaactattcagaatcagagatgctgaaatgcgtcaacattggacttctgtgtgcccaggagaaccctatagaccggcctacaatggcgcatgttatggttttgcttaacagtgattctacctgtttccttgatgctcatgcgaggccaacatatttcatggatgggagctctagttatccttccgaaacacaatcctctactgagtaa More
Protein seq		MRRRFSVLHAVLLLAAVALPHFAARPWPLRCTGGNCSAGSSYKSNLPTPTIKLSKNLFASVEYSLLISGTNITSTDVAGYDRAVTELLNATVRYAVENSTRLFATGQRVGNDTGFSNIFSMAQCSPDLSPAQCRSCLDGLVGMWWRTFPLNGQGARVSGPLCQLRSELGPFYTGSPMVLLPLPVKANGLTPAPSLSPDVVPAITGGKRNSASKILVIIIPILAVAILAAISLCIWNMCKKVRSRKAAKRFSRRDEVEEFESFRSTLLSLTSVQVATDNFHESKKIGEGGFGAVYKRLVKGSDQEGQEEVKNELTLMVNLHHRNLVQLEGFCLEAGERLLVYEYMPNKSLDTFLFGVARGLQYLHEDSQKKIVHRDMKASNVLLDANMNPKIGDFGLARLFQQGQTRDVTDRIVGTFGYMPPEYMMCGQYSTKSDVFSFGILVIEIVTGRRNNEPDFSEENEEIVSIVRKHWEDGTTAEMVDHSLERNYSESEMLKCVNIGLLCAQENPIDRPTMAHVMVLLNSDSTCFLDAHARPTYFMDGSSSYPSETQSSTE
Function		Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_07g0018220	OsKeNa_07g0018220.01	Chr07	22048829	22052501	+	NAM
CDS seq	atgcgccggcgattctcggtccttcatgccgttctcctcctcgcggcggtcgcgctgcctcacttcgccgccaggccgtggcccctacgctgcaccggcggcaactgcagtgccgggagcagctacaaatccaatctcccaacacccacgatcaaacttagcaagaacctcttcgcctccgtcgagtacagcctcctcataagcggcaccaacatcaccagcaccgacgtcgccggctacgaccgcgcggtcaccgagctcctcaacgccaccgtgcggtacgcggtggagaactccacgaggctgttcgccacgggccagcgcgtggggaacgacacggggttcagcaacatcttctccatggcgcagtgctcgccggacctgtcgccggcgcagtgccggagctgcctcgacggcctcgtgggcatgtggtggaggacgttcccgctcaacgggcagggggcgagggtctccggcccgctctgccaactgaggtccgagctgggccccttctacaccggcagcccgatggtgctgttgccgttgccggtcaaggccaacgggctcacgccggcgccgtcgctgtcgccggatgttgtgcctgccattacgggaggtaagcgtaattcagcaagcaaaattctggtaattatcattccaatacttgccgttgcaatcctagctgcaatttccctctgtatatggaatatgtgtaagaaggtcagatcgagaaaagccgcaaaacgtttctccagacgtgatgaagttgaggaatttgaaagttttaggtcaaccttattatctctgacatcagtacaagtggcaacagataacttccacgaaagcaagaaaatcggtgaggggggcttcggcgcagtttataagaggttggtgaagggttcagaccaagaggggcaggaagaggtaaaaaatgagctaactctgatggtcaaccttcatcacaggaatcttgtccaacttgagggtttttgcctagaggcaggagagaggctgcttgtatatgagtacatgcccaacaagagtctcgacacgtttctttttggcgttgctcgaggattgcagtatcttcatgaggactcccaaaagaagattgtccaccgtgacatgaaggcaagcaatgtcttgctagatgcaaatatgaatcccaagattggcgattttggccttgctaggctcttccaacagggccagactcgagatgtcaccgaccgtatcgtcggtacatttggctacatgcctcctgagtatatgatgtgtggacagtattctacaaaatcagacgtgtttagctttggcattcttgtcatcgagatcgtgacaggccggaggaacaatgagcctgatttctctgaggaaaatgaagaaatagtgagcattgtacgaaagcattgggaagacggaacaactgcagagatggtagaccattctttggaaagaaactattcagaatcagagatgctgaaatgcgtcaacattggacttctgtgtgcccaggagaaccctatagaccggcctacaatggcgcatgttatggttttgcttaacagtgattctacctgtttccttgatgctcatgcgaggccaacatatttcatggatgggagctctagttatccttccgaaacacaatcctctactgagtaa More
Protein seq	MRRRFSVLHAVLLLAAVALPHFAARPWPLRCTGGNCSAGSSYKSNLPTPTIKLSKNLFASVEYSLLISGTNITSTDVAGYDRAVTELLNATVRYAVENSTRLFATGQRVGNDTGFSNIFSMAQCSPDLSPAQCRSCLDGLVGMWWRTFPLNGQGARVSGPLCQLRSELGPFYTGSPMVLLPLPVKANGLTPAPSLSPDVVPAITGGKRNSASKILVIIIPILAVAILAAISLCIWNMCKKVRSRKAAKRFSRRDEVEEFESFRSTLLSLTSVQVATDNFHESKKIGEGGFGAVYKRLVKGSDQEGQEEVKNELTLMVNLHHRNLVQLEGFCLEAGERLLVYEYMPNKSLDTFLFGVARGLQYLHEDSQKKIVHRDMKASNVLLDANMNPKIGDFGLARLFQQGQTRDVTDRIVGTFGYMPPEYMMCGQYSTKSDVFSFGILVIEIVTGRRNNEPDFSEENEEIVSIVRKHWEDGTTAEMVDHSLERNYSESEMLKCVNIGLLCAQENPIDRPTMAHVMVLLNSDSTCFLDAHARPTYFMDGSSSYPSETQSSTE More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_07g0018220	OsKeNa_07g0018220.02	Chr07	22048779	22052955	+	IsoSeq
CDS seq	gagctcaaaactgatgcccccgtgcagcacccagaaattagtacgccgccatgcgccggcgattctcggtccttcatgccgttctcctcctcgcggcggtcgcgctgcctcacttcgccgccaggccgtggcccctacgctgcaccggcggcaactgcagtgccgggagcagctacaaatccaatctcccaacacccacgatcaaacttagcaagaacctcttcgcctccgtcgagtacagcctcc More
Protein seq	ELKTDAPVQHPEISTPPCAGDSRSFMPFSSSRRSRCLTSPPGRGPYAAPAATAVPGAATNPISQHPRSNLARTSSPPSSTAS

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr07	22050293	22050611	+	OsKeNa_07g0018220.02	OsKeNa_07g0018220.02,OsKeNa_07g0018220.01	All
A3	Chr07	22050788	22051652	+	OsKeNa_07g0018220.02	OsKeNa_07g0018220.02,OsKeNa_07g0018220.01	All
A5	Chr07	22051828	22051929	+	OsKeNa_07g0018220.01	OsKeNa_07g0018220.02,OsKeNa_07g0018220.01	All

Expression

	Leaf	Root	Panicle
FPKM	0.000000	2.957791	0.279189

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0542400	SBH	0.122690	0.124445	0.490493
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g35770	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0542400	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0018290	RBH	0.0	1.561455	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0018240	SBH	0.000000	2.355741	0.237809
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0018190	SBH	0.0	26.989252	0.682892
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0018060	SBH	0.0	0.679471	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0018210	RBH	0.000000	15.029716	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0351400	SBH	0.309316	19.3094625	2.687566
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0018700	RBH	0.025613	0.614638	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0361900	SBH	0.3760645	17.520449	0.218801
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0017940	RBH	0.026354	0.135489	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0018130	RBH	0.0	5.208980	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0018010	SBH	0.0	12.870400	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0018310	RBH	0.0	0.519603	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0018090	RBH	0.000000	5.407125	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G018000	SBH	0.072686	2.993767	0.096241
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0018080	SBH	0.086080	8.247792	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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