Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0018140 | OGI:07059840 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:21942780-21948625 | ||||||||
| Gene Symbol | AGP, OsAGP, - | ||||||||||
| DNA seq | ggatggtgtagctataatatgcaggtgggaacaatcttgcaaccatcatgcagagttacaactagtaccaaacagagttacataccgcacaaccactatgacacttccttttatctattcatttattatagacaaacgagtgcagaggccatgagttgattcttcagttactgaagaagatcatgcagtcatctactcatctgcacaaatcgctccaacaaacgctcatcttggctccagctccgtgagcgacacctcattcggcgacgccactgatctcgtcttgctgtcgccggtggaccgaaacgcgctcgagcagaggtccgtgtcggcggcgctgtccgtctcctggatgcagaacgttggcctcgacggggcctggacagagaacgtctcgctgctgagcatcacgctcaccgccgacatcgtcggcctgtccgccgggttgtcctggacgcagagcagcccgatgttgatcagcttcagcagatcgtcagctgaacggccacgcatcgccggatccagcaactcctcgatcgtccccgttgtccactgctcccacacctgcaagcataatctcaggataaatttgtcaggatgatgttttaattataagatggttttcgtgattgatcaggtcatggtgatgatggtgaggagcagagattagtgatgctcacaagactcaagaggtcaatggattgctccgagttggagaagctgctgtttctccttcccgtgacaatctctaagatcataacaccgaaactgaacgcgtcggacttgactgaatactgcccacgcatggcgtactccggcgccatgtatccgctgaaaataataggagatgatcttgtaatgaacctgtactacgttcatataatgccgtgccatggaatttcaagggatatatatacttactatgttccagcaatgtgactggtgacgtcttgcgtttgatcccactcaaacagtttcgctaacccaaagtccgagatctttgggttgtgatcgaagtccagcagcacgttgcttgctttgaggtcccgatgaactaccctcagttgagaatcttcgtggagatattgcaagcctcgagcgactccgcttacaatcttgagcctcttCccccagtcaagatctttgcttttctcataatcttccattcaaacaaaggaaatcagcatcaagtcctatagtgtagtggtatatatgtatgcatgtctgtgtctttcatgtaatgaaaaagaagaatgcttcaatttcgcaaaggcagtgagggaactgtaccgaaaagaatggtgtcgaggctcttattcggcatgtattcgtacaccagtagtttctcatctccttccaagcaaacaccaacaaggctcacaaggttcttgtgccgaagttttgcaactaaaactagctcagttttcagctcttctatcccttgtcttgaactttgtgagagccttttcactgctatttcttgaccttcagaaagaactccctgtgtacagatgaatatatagataaacttgttaataatgaacacgaatgtattcactttctaataaaaagatgaacaagggttacatatgatttgatttgtaccttgtaaacggcaccgaaccctccttcgcctagcttatttctgtcagcgaagttgtctgttgcagcccgtagcgttgataggtcgagaaggagcgagtcgatgctttgaatatcatccggattagttgagactgtagcaagataacaggtgaacgatgactcatattgcaaagctagcttgctttgcaacgaatttagttaaactaaatgccatcgattgtttaactttagtacattacgaacttcgctaaatgaaataatcaactttgcctaataagattttctctaaaaaaatgttttatcaagtaaagggccatttccctacctccaagggtaaccagaccaagtaaggccgtacggctatgttcggcagcttgggtataatttttttttttagcaactttcgtatagaaatttttttttAaaaaacacactgtttagcagtttgaaaagcgtgcgcacgtaaaacgagatgtgagagttgggaaccaggggcaacgaacaaagagcatagggattttaactgaaaagaacacttaagttctcacaggatttggaaaaagaacacattctaggagctaagggaccttaactgtattgcaggttacatgtacaatatcctgaagcaagaggacttacatggaagtgatgaggccttatttgctggtgttcgctttctccggaaacaaaagcatgtcaaggcaatgaaggctaatgctgctccagcaataggcagagtaatggccaagatccgtcctgttctatgtcttgttcttcctgcaaacaaatcatgcgtataattattaggtagtcttagtaaaatctggctatcatctaggtggaaatgaattataataacttagattataaaaagtagtccatgactccatgtcagttttgttccttaattatttattttgattttgataatcgaattaatgagatactaattaaatttactccatccatttcatattataagactttctagcattatccacatttatatagatgttaatgaatctaaacacatgtatatgtctcgattcattaacatatatatgaatgtagacaatactagaaagtcttataatatgaaatggaggaagtagaatacaagacatgtacaactttaatttactaatccatatggccgcatgtacagttttgtaagtaccagttttaaatttgaaagtattaataaaattaaattatttataagtgaaataagcatatataaacaaagcactctgaacacacgggttattggctagtatctaaaatgagaacttcaacaaaatgtaaatgtatccatggatggtgttttagtcatggaccacagcaaagtgcaaataacttttttgtctacactgtaaaagttttttcttatcttctctctttcacattatatataggtgttgaatatagacgagaggtgaagagaccaaaacatcctaaaacgtgaatggaggaagtacagtatttcaaaaaaaaaggtttttttcttctacaatagagatcattgaattagtttgaaaccagttagtactaagattggttatgtttaatgtttctctttctttttaaaagaatgtagtaaacatttttctcggttatacggaagacgcaaacacaccgtcacgcacaccatattgactcacacactcatcagtgtgtctcctaaaacatgttttaagaaacgggaatcagcgagacatccctaaccccatagaattcctattaaaaacgcactcgcgtgtacatggtatttgtgggcaccaagatgtaaacccctgcaactgaaccattgcaccatcggggcttaataaaacgaatcttaaaatagtcattgtgtttagatacataaggcatgtttggtagggctctaaatctaatactgagctggacttgtgaagctgagccctacccttgctatctattttgtgaagctaatccacctactatactcttaaaaaactgaggattagtagtgtttggtttatctctaactccatcaaacaatgatcaagtaactaaagcctggtcaaacaaatccatactataatgctgaacttccaatcgaagtctaaaggctgttttggtttagtgccaaatcttgccctaccaaatttttggtagtctaaatagtacttgtgtgatgtttggattgatgccaaaacttgccaaatcaatagaaacctttaccaaaatgttggtagtgccaaaacttgcctaaaatttggcactaacaacaaattggtatggtagcaatccaaacatgccctaacttccatcttcaattgcccaacaaccttacaccacctatatatggcaaatgggctgctcggtctggcttggcctaggcacaactaggcctgggcccgagagcattcaggccagcacgacccgacctacatgccgggctgggttgggcccgcccacaggttgcaccaacgactcaataaggctcgggctggtccggaggcacggaagcccattgtgctcctccttagaataagtctattttgtatcctttatctctttgggcaataccttatatgactaaataagtctatttggcctccctgatcattggaccgtactgtgccgaggcagaggcccaagcacgaccccacggttaggccggccgtatagacccgacaccagtcaggtcgttccatacctaggccgagccaaaaccccgtgccgtgggcctggccgacgggcctgggccttttggccatctataccctcctgtggatcatcgcgtttgtgacatcaactgtctctaccacccccgtagcacagatagccgcctgagccacctacccctgcatcatagccaaacttgaaaagtagtcctcgatcttgaccaatctcaccttcttggcttcttccccaaccttccgctttattagcagttgagtactgtatgttcaagaaaatctgctttgatcttggtcatgatatatagcttgtgtttagttcactcttaactttcaacttttcatcacatcacatcacatccaaaattttcctacacacataaacttctaatttttttcaggaactaaacacagctaatgacaaatatcagaagcaggacctcagcgattccacgaggttttccggttggtcttccccacctcaccggagataaacgaggagaagcaggaattttgccggcgatttgatggtgagttggaggcgattccactgaatgtctaaccaaaaattgatgcgcctcgtgctcagctattccgttataaaattgaaagcaaaactggaaaaagaaaagcgatcatgtgtggtttctgtttcggcaactcaccttcactggtcaccggtggcgtcatgttagccggcggcggcgagggccccgacagctgcagcagcggccggccggagaagaacgagtacgcctcgaaccggaagttgcaccgaacgccgaagaccctgcctccgggcttcccgacgaagtacttgggcgtcatcctcctgattatgtcgccgaggcagctccggcagtcggcctccgacatgtccggcgtgcactgcgccagcgagaagatcctcgggtacgtcgcgtcgtcggacccaacctcccccgtgccgaaccgcctcaccgggtccgccgctgcgtagtcggccgtggcgttgacaagccggccggaggcggcgtcgtacgccgccaccttcgccgcgctgacgttgttgtagttccaggcgacgaacatgccccggttatcggtgacgttggcgaggatgtcctggtcggagtagcggaggatgcaggggtcgttgaacagggtggcgcgcctgttgaacgcgcagagctgctgcgcggtgtcgaaggcggcggcgaggcaggcggcgcaggaggaggcgttggtgtcgccgcggcagagcgcgacggcgtacaccacgtccggcgctgtgccggcggcgccctcggcgaagagggcccgggaagacgacgcgttcgcggggagggcgctggcgagcgcgcgcacgttggcctggtaggcgctcccttccgtgtagttgccggcggtggcgttgcacagctgccacggcagcggctgcgctcccgcgcgcggaggcgcgtggaggaggaggaacgccacgagcagggcgactgcggcgaggttgtagcggagagaaagagagagagcaaggtgtcgccggtgtcgtatggccgtcgccaccgccgtcgccatggtggtctcgcagtctagctc
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| CDS seq | atggcgacggcggtggcgacggccatacgacaccggcgacaccttgctctctctctttctctccgctacaacctcgccgcagtcgccctgctcgtggcgttcctcctcctccacgcgcctccgcgcgcgggagcgcagccgctgccgtggcagctgtgcaacgccaccgccggcaactacacggaagggagcgcctaccaggccaacgtgcgcgcgctcgccagcgccctccccgcgaacgcgtcgtcttcccgggccctcttcgccgagggcgccgccggcacagcgccggacgtggtgtacgccgtcgcgctctgccgcggcgacaccaacgcctcctcctgcgccgcctgcctcgccgccgccttcgacaccgcgcagcagctctgcgcgttcaacaggcgcgccaccctgttcaacgacccctgcatcctccgctactccgaccaggacatcctcgccaacgtcaccgataaccggggcatgttcgtcgcctggaactacaacaacgtcagcgcggcgaaggtggcggcgtacgacgccgcctccggccggcttgtcaacgccacggccgactacgcagcggcggacccggtgaggcggttcggcacgggggaggttgggtccgacgacgcgacgtacccgaggatcttctcgctggcgcagtgcacgccggacatgtcggaggccgactgccggagctgcctcggcgacataatcaggaggatgacgcccaagtacttcgtcgggaagcccggaggcagggtcttcggcgttcggtgcaacttccggttcgaggcgtactcgttcttctccggccggccgctgctgcagctgtcggggccctcgccgccgccggctaacatgacgccaccggtgaccagtgaaggaagaacaagacatagaacaggacggatcttggccattactctgcctattgctggagcagcattagccttcattgccttgacatgcttttgtttccggagaaagcgaacaccagcaaataaggcctcatcacttccattctcaactaatccggatgatattcaaagcatcgactcgctccttctcgacctatcaacgctacgggctgcaacagacaacttcgctgacagaaataagctaggcgaaggagggttcggtgccgtttacaagggagttctttctgaaggtcaagaaatagcagtgaaaaggctctcacaaagttcaagacaagggatagaagagctgaaaactgagctagttttagttgcaaaacttcggcacaagaaccttgtgagccttgttggtgtttgcttggaaggagatgagaaactactggtgtacgaatacatgccgaataagagcctcgacaccattcttttcgattatgagaaaagcaaagatcttgactggggGaagaggctcaagattgtaagcggagtcgctcgaggcttgcaatatctccacgaagattctcaactgagggtagttcatcgggacctcaaagcaagcaacgtgctgctggacttcgatcacaacccaaagatctcggactttgggttagcgaaactgtttgagtgggatcaaacgcaagacgtcaccagtcacattgctggaacatacggatacatggcgccggagtacgccatgcgtgggcagtattcagtcaagtccgacgcgttcagtttcggtgttatgatcttagagattgtcacgggaaggagaaacagcagcttctccaactcggagcaatccattgacctcttgagtcttgtgtgggagcagtggacaacggggacgatcgaggagttgctggatccggcgatgcgtggccgttcagctgacgatctgctgaagctgatcaacatcgggctgctctgcgtccaggacaacccggcggacaggccgacgatgtcggcggtgagcgtgatgctcagcagcgagacgttctctgtccaggccccgtcgaggccaacgttctgcatccaggagacggacagcgccgccgacacggacctctgctcgagcgcgtttcggtccaccggcgacagcaagacgagatcagtggcgtcgccgaatgaggtgtcgctcacggagctggagccaagatga
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| Protein seq | MATAVATAIRHRRHLALSLSLRYNLAAVALLVAFLLLHAPPRAGAQPLPWQLCNATAGNYTEGSAYQANVRALASALPANASSSRALFAEGAAGTAPDVVYAVALCRGDTNASSCAACLAAAFDTAQQLCAFNRRATLFNDPCILRYSDQDILANVTDNRGMFVAWNYNNVSAAKVAAYDAASGRLVNATADYAAADPVRRFGTGEVGSDDATYPRIFSLAQCTPDMSEADCRSCLGDIIRRMTPKYFVGKPGGRVFGVRCNFRFEAYSFFSGRPLLQLSGPSPPPANMTPPVTSEGRTRHRTGRILAITLPIAGAALAFIALTCFCFRRKRTPANKASSLPFSTNPDDIQSIDSLLLDLSTLRAATDNFADRNKLGEGGFGAVYKGVLSEGQEIAVKRLSQSSRQGIEELKTELVLVAKLRHKNLVSLVGVCLEGDEKLLVYEYMPNKSLDTILFDYEKSKDLDWGKRLKIVSGVARGLQYLHEDSQLRVVHRDLKASNVLLDFDHNPKISDFGLAKLFEWDQTQDVTSHIAGTYGYMAPEYAMRGQYSVKSDAFSFGVMILEIVTGRRNSSFSNSEQSIDLLSLVWEQWTTGTIEELLDPAMRGRSADDLLKLINIGLLCVQDNPADRPTMSAVSVMLSSETFSVQAPSRPTFCIQETDSAADTDLCSSAFRSTGDSKTRSVASPNEVSLTELEPR |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0018140 | OsKeNa_07g0018140.01 | Chr07 | 21942780 | 21948625 | - | NAM | ||
| CDS seq | atggcgacggcggtggcgacggccatacgacaccggcgacaccttgctctctctctttctctccgctacaacctcgccgcagtcgccctgctcgtggcgttcctcctcctccacgcgcctccgcgcgcgggagcgcagccgctgccgtggcagctgtgcaacgccaccgccggcaactacacggaagggagcgcctaccaggccaacgtgcgcgcgctcgccagcgccctccccgcgaacgcgtcgtcttcccgggccctcttcgccgagggcgccgccggcacagcgccggacgtggtgtacgccgtcgcgctctgccgcggcgacaccaacgcctcctcctgcgccgcctgcctcgccgccgccttcgacaccgcgcagcagctctgcgcgttcaacaggcgcgccaccctgttcaacgacccctgcatcctccgctactccgaccaggacatcctcgccaacgtcaccgataaccggggcatgttcgtcgcctggaactacaacaacgtcagcgcggcgaaggtggcggcgtacgacgccgcctccggccggcttgtcaacgccacggccgactacgcagcggcggacccggtgaggcggttcggcacgggggaggttgggtccgacgacgcgacgtacccgaggatcttctcgctggcgcagtgcacgccggacatgtcggaggccgactgccggagctgcctcggcgacataatcaggaggatgacgcccaagtacttcgtcgggaagcccggaggcagggtcttcggcgttcggtgcaacttccggttcgaggcgtactcgttcttctccggccggccgctgctgcagctgtcggggccctcgccgccgccggctaacatgacgccaccggtgaccagtgaaggaagaacaagacatagaacaggacggatcttggccattactctgcctattgctggagcagcattagccttcattgccttgacatgcttttgtttccggagaaagcgaacaccagcaaataaggcctcatcacttccattctcaactaatccggatgatattcaaagcatcgactcgctccttctcgacctatcaacgctacgggctgcaacagacaacttcgctgacagaaataagctaggcgaaggagggttcggtgccgtttacaagggagttctttctgaaggtcaagaaatagcagtgaaaaggctctcacaaagttcaagacaagggatagaagagctgaaaactgagctagttttagttgcaaaacttcggcacaagaaccttgtgagccttgttggtgtttgcttggaaggagatgagaaactactggtgtacgaatacatgccgaataagagcctcgacaccattcttttcgattatgagaaaagcaaagatcttgactggggGaagaggctcaagattgtaagcggagtcgctcgaggcttgcaatatctccacgaagattctcaactgagggtagttcatcgggacctcaaagcaagcaacgtgctgctggacttcgatcacaacccaaagatctcggactttgggttagcgaaactgtttgagtgggatcaaacgcaagacgtcaccagtcacattgctggaacatacggatacatggcgccggagtacgccatgcgtgggcagtattcagtcaagtccgacgcgttcagtttcggtgttatgatcttagagattgtcacgggaaggagaaacagcagcttctccaactcggagcaatccattgacctcttgagtcttgtgtgggagcagtggacaacggggacgatcgaggagttgctggatccggcgatgcgtggccgttcagctgacgatctgctgaagctgatcaacatcgggctgctctgcgtccaggacaacccggcggacaggccgacgatgtcggcggtgagcgtgatgctcagcagcgagacgttctctgtccaggccccgtcgaggccaacgttctgcatccaggagacggacagcgccgccgacacggacctctgctcgagcgcgtttcggtccaccggcgacagcaagacgagatcagtggcgtcgccgaatgaggtgtcgctcacggagctggagccaagatga
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| Protein seq | MATAVATAIRHRRHLALSLSLRYNLAAVALLVAFLLLHAPPRAGAQPLPWQLCNATAGNYTEGSAYQANVRALASALPANASSSRALFAEGAAGTAPDVVYAVALCRGDTNASSCAACLAAAFDTAQQLCAFNRRATLFNDPCILRYSDQDILANVTDNRGMFVAWNYNNVSAAKVAAYDAASGRLVNATADYAAADPVRRFGTGEVGSDDATYPRIFSLAQCTPDMSEADCRSCLGDIIRRMTPKYFVGKPGGRVFGVRCNFRFEAYSFFSGRPLLQLSGPSPPPANMTPPVTSEGRTRHRTGRILAITLPIAGAALAFIALTCFCFRRKRTPANKASSLPFSTNPDDIQSIDSLLLDLSTLRAATDNFADRNKLGEGGFGAVYKGVLSEGQEIAVKRLSQSSRQGIEELKTELVLVAKLRHKNLVSLVGVCLEGDEKLLVYEYMPNKSLDTILFDYEKSKDLDWGKRLKIVSGVARGLQYLHEDSQLRVVHRDLKASNVLLDFDHNPKISDFGLAKLFEWDQTQDVTSHIAGTYGYMAPEYAMRGQYSVKSDAFSFGVMILEIVTGRRNSSFSNSEQSIDLLSLVWEQWTTGTIEELLDPAMRGRSADDLLKLINIGLLCVQDNPADRPTMSAVSVMLSSETFSVQAPSRPTFCIQETDSAADTDLCSSAFRSTGDSKTRSVASPNEVSLTELEPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.428583 | 0.0 | 1.890458 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0541200 | RBH | 5.634371 | 5.337052 | 2.009260 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35680 | RBH | 3.575878 | 3.303903 | 0.478992 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018210 | RBH | 0.937823 | 1.028165 | 1.779582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018130 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018130 | RBH | 0.598125 | 0.000000 | 2.516743 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018020 | RBH | 0.084383 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018140 | RBH | 10.405627 | 2.013818 | 11.599786 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0350300 | RBH | 3.6307285 | 1.8313365 | 0.4744905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018630 | RBH | 0.366061 | 0.0 | 0.367790 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0361300 | RBH | 3.1096705 | 3.3005275 | 0.117347 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017900 | RBH | 0.048193 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018060 | RBH | 1.298271 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017930 | RBH | 4.611687 | 5.081882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018210 | RBH | 0.781648 | 0.496746 | 0.242530 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018030 | RBH | 0.188304 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017930 | RBH | 1.773742 | 0.0 | 1.649639 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017990 | RBH | 1.229183 | 0.000000 | 0.421322 |
