Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_07g0017770		OGI:07020840 \| 7/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr07:21542854-21548821		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		Gnk2RLK-4
DNA seq		ttttgtgtcactctctctttaggcttagccattccattccatgtacagcaagcaaacaacgttagcccggtcccaactcccaagtgttttcggttagcaacctaccatgcttgtcctcttgctcctcctcgccgccgccgccgccgtctcttcgccggcgccggtggccggcgacggcgggggcgccttgccggtgctcaacccgatctcctccttctgtaacacgacggcggccaggcggacgtacctgccgaacagcacgttcgaggccaatctcaacggcctcttcgccgtgctgtccaggaacgcctcggcgtcgggctacgcggcgggggcgttcggcgcggcgccggacacggcgtacggcctcttgctctgccgcggcgacttcaccgggaacgactgctccgccgcgcggctggcgtcgtcgttccagcaggcggcgagcagctgcttgtacagcaaggacgtcgccgtctactacgaccagtaccagctccggtactcggaccaggacttcctcgccggcgccggcgccggcgccgccaacgagccggagacggccgcgttcaacatgaacaacgtctccgacgcgggcgacgtcgcggcgttcgacgcgctggtggcggagctggtgaacgcggtggccgacagggcgagcaacgcgaccaggaggtacgccgcggggaaggccgggttcgcgccggaggcgatgaccgtgtacgccatcgcgcagtgcacgccggacctgtcgccgccgcagtgccggggctgcctcgccggtatcatcgaccagatgcccaagtggttcagcggccgcgtcggcggcaggatcctcggcgtgcgctgcgacttcaggtacgagaaggatccattcttcaagatccccaacgacatggtggtgcttagcccgctcccggatccgtcgtcacaaggttagtcctaaattaaatcctctcacaaattttgaaatttgatgcattcggtttaaatttagagatgaattcattcccccagttcatcgatcatatcaatggacttctagtagtcttgtttttgtttttcttttttaaccctcaattcaattttcaaggcctcactgccgttaccagttagctagtatcaattgcttgctcctttgatttgtacagggcatttgcattttctgaaatgggatggagttatttgatttcacaaactatatatatgctttcctcctctgtaaattaattgatggtttagtagtgttgagttctcacgtgagtagctagttgtttttcctttaaattataagtagtatgtagtgtgttgatttcatatgcttgattagtttttgttgaatgggaacatcgttgaatttttgtaagctaaactatatccatatgactttaaagggcattaattatctaagcaacagatctatacagacagtgattacattttgcaaagtttattattttccttattagggaggaacattgtgtatactcgtgttaaacgagaagatgttgtgatgattatatgaaacagcatttttcttttctatgatgcataacggttcgttaattcttgatcatatgattaagggaattaggttccaacttaattaaataatttggtgcatcaatatcgttgttcatctaggtatactacactacacaatagctaatcaacaacttgtatgctaaataaatggtcaaatttgtaagccaaggatgaaaaaaacgctacttcaacaacttttcttaagtttgcagggtataggacataatacatagacaaaatatatactgtcagaaatgtcaacaaattttccatacccaacttgataaatcaatcagtataataaataacacaaccttctattgagtttaacaaaattcacacacttgggggaaaaaaaatactctgtgtcaatgcacaatgcttgcatcatttgttatgcgtgcttatcttaaagtaggacccgcttgactttcctgtccataaaaagaattccccaatccacatcagcctatagaaacgaattgtttgctggccacgagtattagttccggctgcaaatatattctacgacccggagccgtgacagctgatcgatcaaagtcttgcctttcaagatctgagaaaaagaaaagggttctaaaatgatgtcaaatggatgatcgaatcgaccatcaaatttcctcaatccaaacaccttttgtgtttattagtttattaaactcttggagaatacccattgcccaatccagacacttgggtagggccattttttttttctgatattttaatgtctccgtcttgctcattgttttaccctctcggtgtgctcctgtccccttctccacaagaaaaatattccatcttgtagagctttcccatgtgaagaggaatcgatcgagcgtacggggtccaggaaatgcagggaaaaaatgtttttttttaaatctttacggaacaggagatctgggcgtctcgaacgacacatgatcgatgtagtttgtttttgactagatggggcgccatgagcagtatagtgtccatttttattcccaatcaaacgtgttccatctcaagaacatgaatgtgcatgctgatgcatgCccccctgctttgttcagaaatccgccatgagacggggtgctagctagctagccagcaacgagatttgtatatgaatatagtactattggttttcttaacccttttttagctgtgttcttttcacacgatcgatctcttgcccctcgtaggcagctacagctagtagtgatgttccagcgacacacgaaagcgaatccacgtgcgtcacgcgatgctactgccaagtacggagcactgcaaacaagctggtcttgcagtagaatatctatctccgccgatttgttcgattcccctttctccctgcactttccacggtcggtcaccgtggccaccggctgcctcagacaccgtcgtccctgcatttgcacagcgcacagccatggtcctcccccatgcctccagataccagatgcatctgcctagtgtgcgacaagagagaatttgtacctctgtatagtgcggcagttttttcatatttttattagaagagggtaatttttacccggcctctgcatccaaccagatatatatagtctttttaaattggaacttagcctatcaaacagagaacttagccctcaaatattccaatctaaaattcgttctatatgaagacttagaactcagaatcttaggatgctactcagatcactgcaaccactaggcaacgtgccatttcactaataccgcagctgcagtagttcgtttttgctgctttgcttcgctgtgaagttgctcgccatgattcgtttccatggaatgtcacgtcgcgtcgtcgtcgtcgtcgtcccggccgacgacggcgacctcccgcgccgagcttacttgggatatttagccggcggaaagagaaaagacccacggtgtttgacgaatcccccttcccttctctcggtcgtcgccttcgtcgtccaccgcgcgcgcgcctgccggtgaccgagcggggccccgttccactaccgtccagccaaccacggtttcgcctttgccatttgggactacgggagcagtccctaccgcccaaaaccgatggtgatgctcatcatcagcagcatcatccgtgctaactacgaacctgcgtcgcatgcgcctacgtagttgtcatctcatcgttgtcgaaatcgagaatattgtcacatcacacgttcatcgatcgttttcccccttttgcgactactagtcgggatttccagttagacagaaccgaatcaaactctggtgatcaaaaccttgtagtggtacaggaaaaaacgcatgcatgatcttttctgtcgaaaattcgtagcattggatgggcattgaaaagttggggccatggatctgacagtggcagtttctgcaatgtttgcacgcagggagcagcagcagcagcagcggtggcctgtggatcgtggcgatcgtcgtccccgtcgcggtgctcctcctcggcttcttgggatgtttcctctggatcaggaggcgaagaaggagaggtgcgcacgggcatttgctgacaccttgctcgcgctcatgcttcactgccccggttaactgtaggtttcactaactgtcagctgaatcagtgatcaacatggcagggacggtgggcgtgccgaccatgtccatggagatggagcaggtgctcaagctgtggcggatcgaggagagcggctccgagttctcgctctacgacttcgaccagatcgccgacgccaccgacaacttctccgacgcctgcaagctcggccagggcggcttcggccctgtctacaaggtaagcacagttcctccattcattcttgcattctgatgcagagttgcagacacactgatcgactcttcagtgtttcttcagttttcagttcatctgactacttactaaattgtgttttcttttcttacatgtttcagggtcaattgcctgatgggcttgagatagcgatcaagaggctctcatcctgttcagtgcaggggctgatggaattcaagacagagatccagctgatagccaagctgcagcacaccaacctggtcaggctgctgggctgctgcgtccaggctgacgagaagatgctcatctacgagtacatgcacaacaagagcctcgattgcttcatctttggtacaatcactcacatatccatctcgatcaataggctttcaacttctctctgtccatttccaaaatctttgtgcaaacctgctgaatgttgctgatgcttttgtcttgcctgacgtattgatatgcagacactgaaaagggggcgatgctgaactgggacaaacgcttccgtataatcgatggcattgcccaggggcttctttacctgcacaagcactctcggttgcgagttattcacagggatctgaaagcaagcaatatactcctcgaccgggagatgaaccccaaaatctcggattttggaatggcaaggatattctgctcgaatgtgacagaagccaacacgaccagggttgtgggcacacagtaagtactaatcaccgatgatggtcaagttacacagcacatgtgtttttgttgtgtcagaaaagaattagtgatagctacagtcggatgcattgatgatgttgtaatgactgaattttgtgcttttttattcagtggttacatcgctcctgagtatgcttctgagggcctcttctcgatcaaatccgacgtgttcagcttcggcgtcctgcttctcgagatcataagcggcaagaggaccgccggattctaccagtacggcaaattcttcaatctcacaggatatgtaagcacaaatctctgacatccaaaattcacaaatttcagttaccctgaaagactgaaattcacctgaaaatgcacggccgctaataactgaaaacttctgaacttctttcaggcgtaccagctatggcaagaagggcaatggcacgagctggtggaccaggcgctgggggaggacttcccggcgatggaggtgatgaagtgcgtgcaggtggcgctgctgtgcgtccaggacagcgccgacgaccggccgaacatgtccgacgtgatcgccatgctcggcagcgagggggtgacgatgccggagccgaggcagccggcgtacttcaacgtcaggatctccagcctggccgtgtcgtccagctccttcggcgagtcgtactgcatgagcaacgtcacgttgatggaggaggacggcagatagcattttgcagtgcaggcacgtttataatcatgtagattcagattgtagtaagcgattaatcacgattggtgaagttctagcttggcaattgtgtatatgatttgttatgatcagacggataccaaaaggaacagaacatgatgacatagtcgatggcaattcaaccaacatgttattcttctttt More
CDS seq		atgcttgtcctcttgctcctcctcgccgccgccgccgccgtctcttcgccggcgccggtggccggcgacggcgggggcgccttgccggtgctcaacccgatctcctccttctgtaacacgacggcggccaggcggacgtacctgccgaacagcacgttcgaggccaatctcaacggcctcttcgccgtgctgtccaggaacgcctcggcgtcgggctacgcggcgggggcgttcggcgcggcgccggacacggcgtacggcctcttgctctgccgcggcgacttcaccgggaacgactgctccgccgcgcggctggcgtcgtcgttccagcaggcggcgagcagctgcttgtacagcaaggacgtcgccgtctactacgaccagtaccagctccggtactcggaccaggacttcctcgccggcgccggcgccggcgccgccaacgagccggagacggccgcgttcaacatgaacaacgtctccgacgcgggcgacgtcgcggcgttcgacgcgctggtggcggagctggtgaacgcggtggccgacagggcgagcaacgcgaccaggaggtacgccgcggggaaggccgggttcgcgccggaggcgatgaccgtgtacgccatcgcgcagtgcacgccggacctgtcgccgccgcagtgccggggctgcctcgccggtatcatcgaccagatgcccaagtggttcagcggccgcgtcggcggcaggatcctcggcgtgcgctgcgacttcaggtacgagaaggatccattcttcaagatccccaacgacatggtggtgcttagcccgctcccggatccgtcgtcacaagggagcagcagcagcagcagcggtggcctgtggatcgtggcgatcgtcgtccccgtcgcggtgctcctcctcggcttcttgggatgtttcctctggatcaggaggcgaagaaggagagctgaatcagtgatcaacatggcagggacggtgggcgtgccgaccatgtccatggagatggagcaggtgctcaagctgtggcggatcgaggagagcggctccgagttctcgctctacgacttcgaccagatcgccgacgccaccgacaacttctccgacgcctgcaagctcggccagggcggcttcggccctgtctacaagggtcaattgcctgatgggcttgagatagcgatcaagaggctctcatcctgttcagtgcaggggctgatggaattcaagacagagatccagctgatagccaagctgcagcacaccaacctggtcaggctgctgggctgctgcgtccaggctgacgagaagatgctcatctacgagtacatgcacaacaagagcctcgattgcttcatctttgacactgaaaagggggcgatgctgaactgggacaaacgcttccgtataatcgatggcattgcccaggggcttctttacctgcacaagcactctcggttgcgagttattcacagggatctgaaagcaagcaatatactcctcgaccgggagatgaaccccaaaatctcggattttggaatggcaaggatattctgctcgaatgtgacagaagccaacacgaccagggttgtgggcacacatggttacatcgctcctgagtatgcttctgagggcctcttctcgatcaaatccgacgtgttcagcttcggcgtcctgcttctcgagatcataagcggcaagaggaccgccggattctaccagtacggcaaattcttcaatctcacaggatatgcgtaccagctatggcaagaagggcaatggcacgagctggtggaccaggcgctgggggaggacttcccggcgatggaggtgatgaagtgcgtgcaggtggcgctgctgtgcgtccaggacagcgccgacgaccggccgaacatgtccgacgtgatcgccatgctcggcagcgagggggtgacgatgccggagccgaggcagccggcgtacttcaacgtcaggatctccagcctggccgtgtcgtccagctccttcggcgagtcgtactgcatgagcaacgtcacgttgatggaggaggacggcagatag More
Protein seq		MLVLLLLLAAAAAVSSPAPVAGDGGGALPVLNPISSFCNTTAARRTYLPNSTFEANLNGLFAVLSRNASASGYAAGAFGAAPDTAYGLLLCRGDFTGNDCSAARLASSFQQAASSCLYSKDVAVYYDQYQLRYSDQDFLAGAGAGAANEPETAAFNMNNVSDAGDVAAFDALVAELVNAVADRASNATRRYAAGKAGFAPEAMTVYAIAQCTPDLSPPQCRGCLAGIIDQMPKWFSGRVGGRILGVRCDFRYEKDPFFKIPNDMVVLSPLPDPSSQGSSSSSSGGLWIVAIVVPVAVLLLGFLGCFLWIRRRRRRAESVINMAGTVGVPTMSMEMEQVLKLWRIEESGSEFSLYDFDQIADATDNFSDACKLGQGGFGPVYKGQLPDGLEIAIKRLSSCSVQGLMEFKTEIQLIAKLQHTNLVRLLGCCVQADEKMLIYEYMHNKSLDCFIFDTEKGAMLNWDKRFRIIDGIAQGLLYLHKHSRLRVIHRDLKASNILLDREMNPKISDFGMARIFCSNVTEANTTRVVGTHGYIAPEYASEGLFSIKSDVFSFGVLLLEIISGKRTAGFYQYGKFFNLTGYAYQLWQEGQWHELVDQALGEDFPAMEVMKCVQVALLCVQDSADDRPNMSDVIAMLGSEGVTMPEPRQPAYFNVRISSLAVSSSSFGESYCMSNVTLMEEDGR
Function		Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_07g0017770	OsKeNa_07g0017770.01	Chr07	21542854	21548821	+	NAM
CDS seq	atgcttgtcctcttgctcctcctcgccgccgccgccgccgtctcttcgccggcgccggtggccggcgacggcgggggcgccttgccggtgctcaacccgatctcctccttctgtaacacgacggcggccaggcggacgtacctgccgaacagcacgttcgaggccaatctcaacggcctcttcgccgtgctgtccaggaacgcctcggcgtcgggctacgcggcgggggcgttcggcgcggcgccggacacggcgtacggcctcttgctctgccgcggcgacttcaccgggaacgactgctccgccgcgcggctggcgtcgtcgttccagcaggcggcgagcagctgcttgtacagcaaggacgtcgccgtctactacgaccagtaccagctccggtactcggaccaggacttcctcgccggcgccggcgccggcgccgccaacgagccggagacggccgcgttcaacatgaacaacgtctccgacgcgggcgacgtcgcggcgttcgacgcgctggtggcggagctggtgaacgcggtggccgacagggcgagcaacgcgaccaggaggtacgccgcggggaaggccgggttcgcgccggaggcgatgaccgtgtacgccatcgcgcagtgcacgccggacctgtcgccgccgcagtgccggggctgcctcgccggtatcatcgaccagatgcccaagtggttcagcggccgcgtcggcggcaggatcctcggcgtgcgctgcgacttcaggtacgagaaggatccattcttcaagatccccaacgacatggtggtgcttagcccgctcccggatccgtcgtcacaagggagcagcagcagcagcagcggtggcctgtggatcgtggcgatcgtcgtccccgtcgcggtgctcctcctcggcttcttgggatgtttcctctggatcaggaggcgaagaaggagagctgaatcagtgatcaacatggcagggacggtgggcgtgccgaccatgtccatggagatggagcaggtgctcaagctgtggcggatcgaggagagcggctccgagttctcgctctacgacttcgaccagatcgccgacgccaccgacaacttctccgacgcctgcaagctcggccagggcggcttcggccctgtctacaagggtcaattgcctgatgggcttgagatagcgatcaagaggctctcatcctgttcagtgcaggggctgatggaattcaagacagagatccagctgatagccaagctgcagcacaccaacctggtcaggctgctgggctgctgcgtccaggctgacgagaagatgctcatctacgagtacatgcacaacaagagcctcgattgcttcatctttgacactgaaaagggggcgatgctgaactgggacaaacgcttccgtataatcgatggcattgcccaggggcttctttacctgcacaagcactctcggttgcgagttattcacagggatctgaaagcaagcaatatactcctcgaccgggagatgaaccccaaaatctcggattttggaatggcaaggatattctgctcgaatgtgacagaagccaacacgaccagggttgtgggcacacatggttacatcgctcctgagtatgcttctgagggcctcttctcgatcaaatccgacgtgttcagcttcggcgtcctgcttctcgagatcataagcggcaagaggaccgccggattctaccagtacggcaaattcttcaatctcacaggatatgcgtaccagctatggcaagaagggcaatggcacgagctggtggaccaggcgctgggggaggacttcccggcgatggaggtgatgaagtgcgtgcaggtggcgctgctgtgcgtccaggacagcgccgacgaccggccgaacatgtccgacgtgatcgccatgctcggcagcgagggggtgacgatgccggagccgaggcagccggcgtacttcaacgtcaggatctccagcctggccgtgtcgtccagctccttcggcgagtcgtactgcatgagcaacgtcacgttgatggaggaggacggcagatag More
Protein seq	MLVLLLLLAAAAAVSSPAPVAGDGGGALPVLNPISSFCNTTAARRTYLPNSTFEANLNGLFAVLSRNASASGYAAGAFGAAPDTAYGLLLCRGDFTGNDCSAARLASSFQQAASSCLYSKDVAVYYDQYQLRYSDQDFLAGAGAGAANEPETAAFNMNNVSDAGDVAAFDALVAELVNAVADRASNATRRYAAGKAGFAPEAMTVYAIAQCTPDLSPPQCRGCLAGIIDQMPKWFSGRVGGRILGVRCDFRYEKDPFFKIPNDMVVLSPLPDPSSQGSSSSSSGGLWIVAIVVPVAVLLLGFLGCFLWIRRRRRRAESVINMAGTVGVPTMSMEMEQVLKLWRIEESGSEFSLYDFDQIADATDNFSDACKLGQGGFGPVYKGQLPDGLEIAIKRLSSCSVQGLMEFKTEIQLIAKLQHTNLVRLLGCCVQADEKMLIYEYMHNKSLDCFIFDTEKGAMLNWDKRFRIIDGIAQGLLYLHKHSRLRVIHRDLKASNILLDREMNPKISDFGMARIFCSNVTEANTTRVVGTHGYIAPEYASEGLFSIKSDVFSFGVLLLEIISGKRTAGFYQYGKFFNLTGYAYQLWQEGQWHELVDQALGEDFPAMEVMKCVQVALLCVQDSADDRPNMSDVIAMLGSEGVTMPEPRQPAYFNVRISSLAVSSSSFGESYCMSNVTLMEEDGR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_07g0017770	OsKeNa_07g0017770.02	Chr07	21546683	21548820	+	IsoSeq
CDS seq	atggcaagaagggcaatggcacgagctggtggaccaggcgctgggggaggacttcccggcgatggaggtgatgaagtgcgtgcaggtggcgctgctgtgcgtccaggacagcgccgacgaccggccgaacatgtccgacgtgatcgccatgctcggcagcgagggggtgacgatgccggagccgaggcagccggcgtacttcaacgtcaggatctccagcctggccgtgtcgtccagctccttcggcgagtcgtactgcatgagcaacgtcacgttgatggaggaggacggcagatagcattttgcagtgcaggcacgtttataatc More
Protein seq	MARRAMARAGGPGAGGGLPGDGGDEVRAGGAAVRPGQRRRPAEHVRRDRHARQRGGDDAGAEAAGVLQRQDLQPGRVVQLLRRVVLHEQRHVDGGGRQIAFCSAGTFII

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr07	21546932	21547023	+	OsKeNa_07g0017770.01	OsKeNa_07g0017770.01,OsKeNa_07g0017770.02	All

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.135994

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0534700	RBH	0.693196	0.740099	0.261145
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g35004	RBH	0.603626	0.651425	0.066096
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0534700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0017860	RBH	0.142134	0.000000	1.056033
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0017750	RBH	0.0	0.0	0.161132
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0017750	RBH	1.472558	6.916603	0.532785
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0017670	RBH	0.069672	0.100662	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0017760	SBH	0.412422	3.766631	2.356876
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0341900	SBH	1.787428	10.478801	2.813982
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0018260	RBH	0.217382	0.298519	0.167195
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0356400	SBH	2.6708465	8.169351	4.3288805
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0017520	SBH	0.092536	0.079611	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0017680	RBH	0.099510	2.096761	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0017620	RBH	0.283242	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0017880	SBH	0.418212	0.293664	1.245275
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0017660	SBH	0.048012	0.490348	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G017650	RBH	0.266532	3.434601	0.253387
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0017530	RBH	0.185612	3.156367	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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