Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0015820 | OGI:07053600 | 5/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:19520384-19522543 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaaggagctcgtcgggagctgcgataggatgaccaccagaacatccgtcgggaagtcgacgcccacattctccattgcggggggtttcctcggcagcatcgttgtcctcaccatgatccgttcaaactactagtgcacattgaagctggtgggtactggtggttttagtcaaagggtattttagtcattaagataaaattcaatacagcaaaaggatgtcagctaacagctcatggacggcgagggcacacaatagaggtaaagaaaacacgatggtatattattgaacttgacaaagtgagtggtagattgtagaagtgcgataaactcagtggtattgagtggattctctcatgaaaaaaatatgggtgatatttttgcatgcagtgcagatcacttatccatccgcatgcaaaaatcatgtggctttttaaagtttgaatcgaattttataataataaatgaactcatgtgaaaaaagttatcaaaaacaaagttgtagaactcattgagatctaccaatttgcttttggttatttcttcatccaagtttgattgaactatataaaatttgaattttaaaacataagaaattcaaataatttttcgggtagtaaatgatttcaaatagaaaaattgtcaacaacaaagttgtataacttatcaagatctacaacttttgttttggtcatttttctgtatgactttgttcgaatagtttgaatttgaatttgaaaatatgataacttcaaacaaaatttttaaatactaaatgatttcaactgaaaaagtcatcaacaacaaagttgtataactcatcaagatctataccttttatttcagtcatttcttcatccgacaaagtgatagtaacattgttcacaaaatttacatatctctcatttggttttataaactataagagataagatatgtaaattttgtgaacaatgttataatcacattgttggatgaagaaatgatcaaaataaaagttgtacgtcttgatgagttctacaattttatgttcatgatttttttcacctgaaattatttactacttcaaaatattttttgaagttttaaaattcaaatttttaattgataaaacaaagtcacaataaaaaaaaggccaaaataatagcagtaagaacacgataatatgatagagcatgattttagtaacatttaggaaaatgaatcatccaattcggaattcaaatgagtgagataaactagtttcaaattttattttcacaaaatgagtttattttttgcatgcagatctcttaagagcccgcatggaaaaaaatcgatttttccatacggccgtcttaaggagccatatgcgaaaataccgctcgatttttccagacacggcaacttacgcggtccgtttgtaaaaatcataagatctcttacaggaaaatagttttttaagtagtgctaagtccatcatttcatttttttagccatcaattttgataaattcatatagtttaacatcataagatttatatttttaattcactataggaaatacttccataatatataactcaaacattgttaaactatatgaaattttaaaaattaacaattataaagatgaaaatgtttgacttatgataaaactagaacgttattagtattttgaaacgctctctggtttttaatgtattcatgtaacgtacgactattcgtcttttttaaaaagaatataaatgttatttactttgttgtcttgtgacttattttatcattgaaaaactataaccttaataacttatacttttacatattcatactaaaagattttagtaaaacaaataatcaaatgttacttaaaaaaatagaggtagtatacagtagtactaataatgtgacatacctggacttgtccaactggagatagtaatggtcgagcgcgtcctcggcgtcgaagacggcgtcccgcgtctgcagcacccacaccttggtgacctcgtcggagacggcgcggcgcttggcgtcggcctcccggaggaaggcctgcagccacatgagcttgtccttgagcttctggatgtcggcgttcacccccaccagcgcccgcgcctgccccagcgccagctcctgcagcctccccaccagcggccccacgatcgcctccgccat
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| CDS seq | atggcggaggcgatcgtggggccgctggtggggaggctgcaggagctggcgctggggcaggcgcgggcgctggtgggggtgaacgccgacatccagaagctcaaggacaagctcatgtggctgcaggccttcctccgggaggccgacgccaagcgccgcgccgtctccgacgaggtcaccaaggtgtgggtgctgcagacgcgggacgccaatgtgggcgtcgacttcccgacggatgttctggtggtcatcctatcgcagctcccgacgagctccttgtga |
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| Protein seq | MAEAIVGPLVGRLQELALGQARALVGVNADIQKLKDKLMWLQAFLREADAKRRAVSDEVTKVWVLQTRDANVGVDFPTDVLVVILSQLPTSSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0015820 | OsKeNa_07g0015820.01 | Chr07 | 19520384 | 19522543 | - | NAM | ||
| CDS seq | atggcggaggcgatcgtggggccgctggtggggaggctgcaggagctggcgctggggcaggcgcgggcgctggtgggggtgaacgccgacatccagaagctcaaggacaagctcatgtggctgcaggccttcctccgggaggccgacgccaagcgccgcgccgtctccgacgaggtcaccaaggtgtgggtgctgcagacgcgggacgccaatgtgggcgtcgacttcccgacggatgttctggtggtcatcctatcgcagctcccgacgagctccttgtga
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| Protein seq | MAEAIVGPLVGRLQELALGQARALVGVNADIQKLKDKLMWLQAFLREADAKRRAVSDEVTKVWVLQTRDANVGVDFPTDVLVVILSQLPTSSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0501600 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g31810 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0501600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015890 | SBH | 0.0 | 1.633445 | 0.393469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015790 | SBH | 0.0 | 0.0 | 0.206068 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015770 | SBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0314300 | RBH | 0.022332 | 0.0650945 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016260 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0325700 | SBH | 0.043743 | 0.0288905 | 0.008121 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015530 | SBH | 0.0 | 0.037067 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015950 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015680 | SBH | 0.0 | 0.0 | 0.276100 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015600 | SBH | 0.0 | 0.0 | 0.0 |
