Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0013950 | OGI:07046940 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:17242505-17244052 | ||||||||
| Gene Symbol | SLG, slg, Rurm1, Urm1 | ||||||||||
| DNA seq | actgcaaatctgtgatattgaatattcataactgacaactgccttttcattacagaaattgaccatatcaacttcagcagattcctctccacaatccattctctccagaaatttatggcacacaacctctgtttctgatggtacaagatgcatttagcaacatgatatcagtggtgatttcggtagtcctaatagttgtactaaccaccgtgtaatgtggagataaaaacaacaacatccttctcctccaactccgcgtcaaggccaccgcatagctcccagtcacaatcatttataagtacgagaacaccaggccttctgcaagcacgaaaagaagcacctcatcaagactaatggacttaactttgtccacaaattaaagaaagagaatttctaaatttccttcaagtttgacattgcaaaagtttaatgatatcccccagcttattgcgctaacaaagcatccacttctctgcaaagaaaacagcaaataacctgtataccacccaaagcattcataagcacatactaaactgtcattagaaggtttccttattcaagtaaaatcaccggatcaataaccctagttcattatgcatatttctaatgaaatcaactaaactgtcattagaaggttgcatatttaacatttactccatccgtttcacaacgtaagtcattctagcatttcccacatttatgaattacgttgtgaaacggaggaagtagctccagaaacaatgacaaacatttttaacgaaataacagaaataaaatatttgagcatttctcctataacttaagtttgcatggttaagttgaaattcagcagaaataacagccagcatcaccaaagaagcgacaccactcatcacctagcaatatccataccgaagtggaccgaaaacaaataaaatgctttggacacaccattgatcattgaagcggatcaaatcatatcatgcacataaaccatgagacggaaagggaaaatcatacactgaatcacccttgaggaacatctccggcctctccttgatcagattggacttcacccaagcgagcaaccctttcatcacgacctgcaaaacgaaacaaacaacaaagaaaatgttcacacacaaacagctcagaattctaagtccgtgattagctaagcagtagctgcacgcggcgcggctccgtcgaggcgggcgggcgtcaccttcccatcgccgtcgttgggctggaggtccaccttgtgcaccttggtggacttctccaggagcagctccagccctcccctgcaaccaccaccaccatcaatcaacccacacagctcatcagcaaccacaaaatacacagcagcaacacaacgatggaaggcatcgagagagagagagtgaatcacccacccgaattcgagggttagatgcatggcggagaggattgggaggaggcgaagcgcgaacagcgatcgagcgtcgacgcggcgagggtgcgagcggccgaggaggggggagtcgcgggcggcggcgagagcgagtagacggcggcggcggcggtggg
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| CDS seq | atgcatctaaccctcgaattcgggggagggctggagctgctcctggagaagtccaccaaggtgcacaaggtggacctccagcccaacgacggcgatgggaaggtcgtgatgaaagggttgctcgcttgggtgaagtccaatctgatcaaggagaggccggagatgttcctcaagggtgattcagtaaggcctggtgttctcgtacttataaatgattgtgactgggagctatgcggtggccttgacgcggagttggaggagaaggatgttgttgtttttatctccacattacacggtggttag |
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| Protein seq | MHLTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG |
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| Function | Ubiquitin-related modifier 1 homolog [UniProtKB/Swiss-Prot:Q0D6M1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0013950 | OsKeNa_07g0013950.01 | Chr07 | 17242505 | 17244052 | - | NAM | ||
| CDS seq | atgcatctaaccctcgaattcgggggagggctggagctgctcctggagaagtccaccaaggtgcacaaggtggacctccagcccaacgacggcgatgggaaggtcgtgatgaaagggttgctcgcttgggtgaagtccaatctgatcaaggagaggccggagatgttcctcaagggtgattcagtaaggcctggtgttctcgtacttataaatgattgtgactgggagctatgcggtggccttgacgcggagttggaggagaaggatgttgttgtttttatctccacattacacggtggttag
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| Protein seq | MHLTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 10.121178 | 3.010987 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0466300 | RBH | 2.125027 | 1.777392 | 2.285368 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g28280 | RBH | 2.120887 | 1.152650 | 0.573944 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0466300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0014080 | RBH | 0.898938 | 12.417036 | 6.750552 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013940 | RBH | 0.664269 | 3.516504 | 4.481577 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013830 | RBH | 0.449370 | 0.217501 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013810 | RBH | 8.000681 | 0.0 | 5.181234 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0278000 | RBH | 6.7928745 | 11.528077 | 19.926916 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0014330 | RBH | 0.443343 | 1.888960 | 0.375024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0285700 | RBH | 9.609059 | 10.229699 | 27.369068 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013660 | RBH | 0.190564 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013750 | RBH | 0.000000 | 10.735049 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013750 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013960 | RBH | 0.000000 | 0.376542 | 1.084510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013820 | RBH | 0.186224 | 6.474616 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013750 | RBH | 0.170669 | 0.815988 | 0.504690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013630 | RBH | 0.143753 | 17.033474 | 2.268538 |
