Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0012780 | OGI:07042180 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:15701538-15705486 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atatcaaaacacagcagagatcgatagatctcttctgaagtccaaaaaaaacttcagtctagctgcacactagttagcaagttacttagcgttcaacttccaaagaagacagtagctagctagtttaatcaaatccaagctgcaggatgtcttctgctgggtcacgtagctcgtcccgcaacagcaacatggcgtcagagtggagcaaagaggagaacaagctgttcgagcaggccattgcctactacggcgagggcgcgcctgatctctggcacaaggtgtcccgcgccatggggggcaccaagacagccgacgaggtgcgcctccacttcgagatcctcgtggacgatatcaagctgattgaggcaaggcgagtcccgttccccaagtacaatacacagggagcatggaactgaccgactgaggtaatataattaactactcatcctgattcaatgctctcacgtccagtaataataaccgcgtgttgctaattaacttgctatagctcttcaaagggagtagtcagcacgtgttgtgataagtttagaatcctgctgcttagcaacacaatctgcagtttcaatctagcttaattgtaagctgatagctactgtaacatctcataagaacacatatgcagggagcatattagatgtcagccatggaaatcatgccctagatggttgaacttgagcactataagctaggggttagtcagttgtcgttttctttgttgttctaatttccaaatgcactgcaacatgagagtatctgtactttctgtaacagataaatctggtgaaactaacagctagctcataatttgagcctgtggcaaaccatcatgcacacaaaattagcatgcagttctacgcactatagtatatatgcaccatttcgtgatttgttggtttgcacataggccggtataggaacacgagctagccctaatttggatatatagtgacggtttttcccctaatgccaattattcacgtgtgatctacaaccagaagaataattctctgataccaaagaaaagaaagtttgaatcatgcagtctaagcaccttgagcagtacgttgtgcttaaatcagttccagactagctaacagccaacaggtgctttaaacatctctttttcatgtcagttcatctggcaaattaaaaggtgatttctgtcttttcaagaggcacaagtgtgatgtgtccataggaaaaggcaatttattcaaagttatcctgtactctcttggaaaggggacacaaccattgtacgtaaccctagaagagggagctatatatgcgtacctcattcttctcaaaataatttaatttgtactaaatagataagtaacctcaatataccacacctagctagcatgcctacatagaaagtaaatctattatatactaaaaatccattaaacttcctacaaacgctcataagctgccacatagcgctcctacaaacactcctaggccgccacgtggcactatctaatctcaccgttgattttcacttaaattgatagacccgttaatttagaccattagattagatctattattaaaaaggtgatagtttttcctaaaaaaaaaatgcaactggtgtccctacgcaagtataattgAaaaaaaaaaataaagcttcctgctgttaggcggaagaaaaagaaataaacatctatgtacgataaaaaataataaagccaaaaaaatgtgtagttagtacccttggaaaaaacgaagatctaatgtaggactttgtataatataaaatataatattacataatatatggaagtataggcttgtaaactatatctataatataaatatcaaatatcaaatcaacggtctctacgcattatgttttaaattatttttaattatatgcccaatttatgatccattgtattcgttaaattatataaatatcggtatataaaagtaatgttgtggtcttaaatacatcatgatacatcggatcgacatacaataggtaactttagagactaaaaatctagctatgtggcgctcctacgatcggttctatccaccacgtggtgctctaataaattagagaaaaccttatgaattgtgagaaaaaaacatgcaatcatttttattggtggacctactatttttaaattattagattagatttatttaaaatacatctaacctgctcgaataaaaaaaaccgcgtgaatagttgtacgtatatatacgtacttccgtactttgctactcacttaaaaaaaggaaaaatatgtaattacgattgaaaaaaaaagattagccctaccacggtcccacctaattgttacgagttacacgtacatatgtactgttcacccaaaaaagtgaaaaaatatctcaaatgtgccatacctactactactcaccggattgagaaaaaaattctcctgggcatgtacaaaccccatcatcgactttcacttaaatcatttagagaaattagaaaaataaaatctccacctcctcctcactctcacatctacacaacactgtcgtcccctccctattgttttatctattaaattaaaacagaaacaataaataatctttaatatgttttagtacaaagtacaaacacggcactcacaacgcgcatacactcacatctatgaacgcacacatgcatatacccccatgagtacttccgagagactagggtgatatatattaagattgacgaagtcactacatacgtctcgctgtcgatgggtacgtcacctactactgaaagaatttgttaagtctaggacattaacccgagtgggcaaattccattacaacgaacctaaccggttgagctacgttcacttcgcaataatgttggatattaaactaaccataatttttgagctatatttctggaacacttatatgccttttaaaccggtggaatcattatttctaacagttagatctatcctatataagaaaaaccagatgtgtatacatgatgtattgtgcaattatatttcgctttcacttagcttgcgtggaacttctgacccactctatatgaaatgttcatacatggactagctctcaaattacatcaatcatattaagctatataaacccatatatttagtggagcatcatgtcccacccaattaatcctcgaataaaccatgataatatatatgcaattaaaaaaagaaaaataccttaattttactttacacttacttttcgttgacatgtattctaaagaaaataagtctacctttttcaaatgatgaagaagattataaataattgcttatagatattacttaaatatgatataatataaaactaatatgttagaaaattataaaagaaattaatgtagacgaaaacaatttatggagaaatcgtggtagatgttcaccggttaatattttgctcttataaatgtctcaaacttagcgtacgaagtatgcccgcgcattcgcgcgggcgataaacggcgtctaagtttctactattcaaatgtaacataatggtgaagtggtgaccttaaatagatctacttttttttatcactgctaagataaactcatggtacatatttccaatttattttccaggggtggaagcatctgaggttccagcaaggaaataactccaatataaactatattccttcctgtggctagttgttgaaggaaagcatattgatatattgttactgtgttaagaagattgtggtcgattgcttggttataaataaaagaagaaagggattgtctgtatatacttttaggttgtaaagcaaatcagtgttgatcttgcaaaaaaactagcctgcatttggcattgtgtgtggttttgaacattccagctatactatatatgtagtaaacatcagtgatgtaagacttctgtactcgcgtgctagtgattataaagttgtggttactag
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| CDS seq | atgtcttctgctgggtcacgtagctcgtcccgcaacagcaacatggcgtcagagtggagcaaagaggagaacaagctgttcgagcaggccattgcctactacggcgagggcgcgcctgatctctggcacaaggtgtcccgcgccatggggggcaccaagacagccgacgaggtgcgcctccacttcgagatcctcgtggacgatatcaagctgattgaggcaaggcgagtcccgttccccaagtacaatacacagggagcatggaactga |
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| Protein seq | MSSAGSRSSSRNSNMASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRVPFPKYNTQGAWN |
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| Function | Protein RADIALIS-like 3 [UniProtKB/Swiss-Prot:Q6NNN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0012780 | OsKeNa_07g0012780.01 | Chr07 | 15701538 | 15705486 | + | NAM | ||
| CDS seq | atgtcttctgctgggtcacgtagctcgtcccgcaacagcaacatggcgtcagagtggagcaaagaggagaacaagctgttcgagcaggccattgcctactacggcgagggcgcgcctgatctctggcacaaggtgtcccgcgccatggggggcaccaagacagccgacgaggtgcgcctccacttcgagatcctcgtggacgatatcaagctgattgaggcaaggcgagtcccgttccccaagtacaatacacagggagcatggaactga
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| Protein seq | MSSAGSRSSSRNSNMASEWSKEENKLFEQAIAYYGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRVPFPKYNTQGAWN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0443500 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g26150 | RBH | 0.244575 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0443500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012940 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027620 | SBH | 0.0 | 0.0 | 4.342742 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0012740 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0012670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012590 | RBH | 1.379605 | 0.0 | 3.247875 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0249900 | RBH | 0.0625335 | 0.0143705 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0253800 | RBH | 0.2114265 | 0 | 0.014322 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012630 | RBH | 0.0 | 4.326337 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012840 | RBH | 0.0 | 0.0 | 0.331714 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G012620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012450 | RBH | 0.0 | 0.0 | 0.0 |
