Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0010000 | OGI:07028780 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:10005085-10007463 | ||||||||
| Gene Symbol | OsFbox360, Os_F0235, OsFbox361, Os_F0171 | ||||||||||
| DNA seq | atggtgatgatgagctgcaagaggaggaaggtttcaccagccagtggtgctggtgcaccggtagtgctgccagaagagatgatgattgaggtgctccagtggctgcccgtcgaatccgtcctacgttttcgagccgtctgccgatcctgggccacggctctctcttccgaccaattccgcggcttccacacggccaagaacaagatcaagccgttgccacccaagctgttcttcgtcgcgcagaccgcgggattcggctccacatcggtgcacatatcctcgccgctgtcgcggtcagtcccgggtggtgatgatcatcgtgatctgctcttcagtctggacaatgtgcgcggcgatttcatggccatgacgcctacaccatgccatggcctcacccttctgcacgatgctatgggactagagtactacgttctcaatgcggcaacaaggtcgatcagccgtctgccaccttgccaaaccgtgccatccggatctgctggactgggattcgatgcccggacaggggagtacaaggtggttaggctgtttcgagagataatttctggagaaccgcataccaagtgtcagatatacactctagggggcaagcatggtgactcatggaggccagctagtggaggtgtacctttcaaattccgcactgctggaactcattctatttcagcttcacaacaacataaacttcttccagtgtttgtggatgggtttcttcactggcttactggctctttgttctctttcttgaggccacatgctgccatcttatccttctctgtgacagaagagacattcagattggtcaggtcaccgccctttcaggtttcaggagtgcacttggtggatctctctggtaacctgtgcatggtccgggaccttcgtcgcatgtcgtctacgctggagatttggaagctgaatgatctttactccagtgattggtcattggagcatcgcatcgatttgtcgacggagcatgttgcccgagatttaatgaaaccagattttatcagagttattggttctgctggcagtagtggtatgtcagggaagaagaatgtaatcattgctacatccaatcgcaaggcgatcgcctatgatcctacatcggaaacactagaaacaatccttgagatcaagggaactcctttgccttaccaaactgcacgttctgctcttggactgatcagtttgtttgaagacagtcttgctcctgtgtgtaaaaccaatgaagagatagcattgtcatctccccttgccaaggtgataaaggaggccctactacggcttccgggtgattatgccgtgcagttcaaacttgtctctaagcagtggcatagatttattgaaagttggagcttcgctcgtggatacgacatgtataacaacagggacaggaggccaaagatcaggcttgtgggcatgggcacaggtggatcatcaggttttagttttgccagcatagaaaaattgcttcaagaatctcctagtaaagatacatggcttgatgcaaaggtggtttgctccaagccttgccatgggatgaatctcataagcactgagctggaggattatctatacaacccttgtacaggttaccgctatgtccgcagtacccgaggggctcttgtctacattccaaatagaatacctagtgatagatttcgtcacgatcatgcttttactaccggtaataagaatgtcggcctggggttcgatccactgatgcaggagcatgtcattgtggagcttttctatcagtggagaaacttcaaaacctgtcgttacaacataacatgcttgctttttacctgtaaatcgcgtcacacatgtgattttttacagccgcctctgcctgtgaatgacatgcctccggcttacttggctggatttctgtactggatgagtgagccaaggttgagccagagtaagacaagcgccattctctcgttcgagatcgcgaccaagacatttgttgtcatccagtgcccttcgtgtgctctaacaagacacaacagaagcccttgcgaatcattcgtggtagagcttgaaggaatgctttgcgttgttctcgctaatccgtttgaagaggaattggatatttggaagatggagcatggtcaatgggatagagcatacagagtgtgtctgaaaggttggcctggttattcccttggagctaatgtcgtggttccgatggctgttgatccgaaggatggaaggattctgctcaacacagggagtaaattgggtctctatgatccaacgaagcgggttatcgaaaacctgtatgatcttgatgaggtgctgcgtgtcaaacagacagatgagacgctgcatgtcgaagataaagaaaaatcttag
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| CDS seq | atggtgatgatgagctgcaagaggaggaaggtttcaccagccagtggtgctggtgcaccggtagtgctgccagaagagatgatgattgaggtgctccagtggctgcccgtcgaatccgtcctacgttttcgagccgtctgccgatcctgggccacggctctctcttccgaccaattccgcggcttccacacggccaagaacaagatcaagccgttgccacccaagctgttcttcgtcgcgcagaccgcgggattcggctccacatcggtgcacatatcctcgccgctgtcgcggtcagtcccgggtggtgatgatcatcgtgatctgctcttcagtctggacaatgtgcgcggcgatttcatggccatgacgcctacaccatgccatggcctcacccttctgcacgatgctatgggactagagtactacgttctcaatgcggcaacaaggtcgatcagccgtctgccaccttgccaaaccgtgccatccggatctgctggactgggattcgatgcccggacaggggagtacaaggtggttaggctgtttcgagagataatttctggagaaccgcataccaagtgtcagatatacactctagggggcaagcatggtgactcatggaggccagctagtggaggtgtacctttcaaattccgcactgctggaactcattctatttcagcttcacaacaacataaacttcttccagtgtttgtggatgggtttcttcactggcttactggctctttgttctctttcttgaggccacatgctgccatcttatccttctctgtgacagaagagacattcagattggtcaggtcaccgccctttcaggtttcaggagtgcacttggtggatctctctggtaacctgtgcatggtccgggaccttcgtcgcatgtcgtctacgctggagatttggaagctgaatgatctttactccagtgattggtcattggagcatcgcatcgatttgtcgacggagcatgttgcccgagatttaatgaaaccagattttatcagagttattggttctgctggcagtagtggtatgtcagggaagaagaatgtaatcattgctacatccaatcgcaaggcgatcgcctatgatcctacatcggaaacactagaaacaatccttgagatcaagggaactcctttgccttaccaaactgcacgttctgctcttggactgatcagtttgtttgaagacagtcttgctcctgtgtgtaaaaccaatgaagagatagcattgtcatctccccttgccaaggtgataaaggaggccctactacggcttccgggtgattatgccgtgcagttcaaacttgtctctaagcagtggcatagatttattgaaagttggagcttcgctcgtggatacgacatgtataacaacagggacaggaggccaaagatcaggcttgtgggcatgggcacaggtggatcatcaggttaccgctatgtccgcagtacccgaggggctcttgtctacattccaaatagaatacctagtgatagatttcgtcacgatcatgcttttactaccggtaataagaatgtcggcctggggttcgatccactgatgcaggagcatgtcattgtggagcttttctatcagtggagaaacttcaaaacctgtcgttacaacataacatgcttgctttttacctgtaaatcgcgtcacacatgtgattttttacagccgcctctgcctgtgaatgacatgcctccggcttacttggctggatttctgtactggatgagtgagccaaggttgagccagagtaagacaagcgccattctctcgttcgagatcgcgaccaagacatttgttgtcatccagtgcccttcgtgtgctctaacaagacacaacagaagcccttgcgaatcattcgtggtagagcttgaaggaatgctttgcgttgttctcgctaatccgtttgaagaggaattggatatttggaagatggagcatggtcaatgggatagagcatacagagtgtgtctgaaaggttggcctggttattcccttggagctaatgtcgtggttccgatggctgttgatccgaaggatggaaggattctgctcaacacagggagtaaattgggtctctatgatccaacgaagcgggttatcgaaaacctgtatgatcttgatgaggtgctgcgtgtcaaacagacagatgagacgctgcatgtcgaagataaagaaaaatcttag
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| Protein seq | MVMMSCKRRKVSPASGAGAPVVLPEEMMIEVLQWLPVESVLRFRAVCRSWATALSSDQFRGFHTAKNKIKPLPPKLFFVAQTAGFGSTSVHISSPLSRSVPGGDDHRDLLFSLDNVRGDFMAMTPTPCHGLTLLHDAMGLEYYVLNAATRSISRLPPCQTVPSGSAGLGFDARTGEYKVVRLFREIISGEPHTKCQIYTLGGKHGDSWRPASGGVPFKFRTAGTHSISASQQHKLLPVFVDGFLHWLTGSLFSFLRPHAAILSFSVTEETFRLVRSPPFQVSGVHLVDLSGNLCMVRDLRRMSSTLEIWKLNDLYSSDWSLEHRIDLSTEHVARDLMKPDFIRVIGSAGSSGMSGKKNVIIATSNRKAIAYDPTSETLETILEIKGTPLPYQTARSALGLISLFEDSLAPVCKTNEEIALSSPLAKVIKEALLRLPGDYAVQFKLVSKQWHRFIESWSFARGYDMYNNRDRRPKIRLVGMGTGGSSGYRYVRSTRGALVYIPNRIPSDRFRHDHAFTTGNKNVGLGFDPLMQEHVIVELFYQWRNFKTCRYNITCLLFTCKSRHTCDFLQPPLPVNDMPPAYLAGFLYWMSEPRLSQSKTSAILSFEIATKTFVVIQCPSCALTRHNRSPCESFVVELEGMLCVVLANPFEEELDIWKMEHGQWDRAYRVCLKGWPGYSLGANVVVPMAVDPKDGRILLNTGSKLGLYDPTKRVIENLYDLDEVLRVKQTDETLHVEDKEKS |
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| Function | Putative F-box protein At1g33530 [UniProtKB/Swiss-Prot:Q9C800] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0010000 | OsKeNa_07g0010000.01 | Chr07 | 10005085 | 10007463 | + | NAM | ||
| CDS seq | atggtgatgatgagctgcaagaggaggaaggtttcaccagccagtggtgctggtgcaccggtagtgctgccagaagagatgatgattgaggtgctccagtggctgcccgtcgaatccgtcctacgttttcgagccgtctgccgatcctgggccacggctctctcttccgaccaattccgcggcttccacacggccaagaacaagatcaagccgttgccacccaagctgttcttcgtcgcgcagaccgcgggattcggctccacatcggtgcacatatcctcgccgctgtcgcggtcagtcccgggtggtgatgatcatcgtgatctgctcttcagtctggacaatgtgcgcggcgatttcatggccatgacgcctacaccatgccatggcctcacccttctgcacgatgctatgggactagagtactacgttctcaatgcggcaacaaggtcgatcagccgtctgccaccttgccaaaccgtgccatccggatctgctggactgggattcgatgcccggacaggggagtacaaggtggttaggctgtttcgagagataatttctggagaaccgcataccaagtgtcagatatacactctagggggcaagcatggtgactcatggaggccagctagtggaggtgtacctttcaaattccgcactgctggaactcattctatttcagcttcacaacaacataaacttcttccagtgtttgtggatgggtttcttcactggcttactggctctttgttctctttcttgaggccacatgctgccatcttatccttctctgtgacagaagagacattcagattggtcaggtcaccgccctttcaggtttcaggagtgcacttggtggatctctctggtaacctgtgcatggtccgggaccttcgtcgcatgtcgtctacgctggagatttggaagctgaatgatctttactccagtgattggtcattggagcatcgcatcgatttgtcgacggagcatgttgcccgagatttaatgaaaccagattttatcagagttattggttctgctggcagtagtggtatgtcagggaagaagaatgtaatcattgctacatccaatcgcaaggcgatcgcctatgatcctacatcggaaacactagaaacaatccttgagatcaagggaactcctttgccttaccaaactgcacgttctgctcttggactgatcagtttgtttgaagacagtcttgctcctgtgtgtaaaaccaatgaagagatagcattgtcatctccccttgccaaggtgataaaggaggccctactacggcttccgggtgattatgccgtgcagttcaaacttgtctctaagcagtggcatagatttattgaaagttggagcttcgctcgtggatacgacatgtataacaacagggacaggaggccaaagatcaggcttgtgggcatgggcacaggtggatcatcaggttaccgctatgtccgcagtacccgaggggctcttgtctacattccaaatagaatacctagtgatagatttcgtcacgatcatgcttttactaccggtaataagaatgtcggcctggggttcgatccactgatgcaggagcatgtcattgtggagcttttctatcagtggagaaacttcaaaacctgtcgttacaacataacatgcttgctttttacctgtaaatcgcgtcacacatgtgattttttacagccgcctctgcctgtgaatgacatgcctccggcttacttggctggatttctgtactggatgagtgagccaaggttgagccagagtaagacaagcgccattctctcgttcgagatcgcgaccaagacatttgttgtcatccagtgcccttcgtgtgctctaacaagacacaacagaagcccttgcgaatcattcgtggtagagcttgaaggaatgctttgcgttgttctcgctaatccgtttgaagaggaattggatatttggaagatggagcatggtcaatgggatagagcatacagagtgtgtctgaaaggttggcctggttattcccttggagctaatgtcgtggttccgatggctgttgatccgaaggatggaaggattctgctcaacacagggagtaaattgggtctctatgatccaacgaagcgggttatcgaaaacctgtatgatcttgatgaggtgctgcgtgtcaaacagacagatgagacgctgcatgtcgaagataaagaaaaatcttag
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| Protein seq | MVMMSCKRRKVSPASGAGAPVVLPEEMMIEVLQWLPVESVLRFRAVCRSWATALSSDQFRGFHTAKNKIKPLPPKLFFVAQTAGFGSTSVHISSPLSRSVPGGDDHRDLLFSLDNVRGDFMAMTPTPCHGLTLLHDAMGLEYYVLNAATRSISRLPPCQTVPSGSAGLGFDARTGEYKVVRLFREIISGEPHTKCQIYTLGGKHGDSWRPASGGVPFKFRTAGTHSISASQQHKLLPVFVDGFLHWLTGSLFSFLRPHAAILSFSVTEETFRLVRSPPFQVSGVHLVDLSGNLCMVRDLRRMSSTLEIWKLNDLYSSDWSLEHRIDLSTEHVARDLMKPDFIRVIGSAGSSGMSGKKNVIIATSNRKAIAYDPTSETLETILEIKGTPLPYQTARSALGLISLFEDSLAPVCKTNEEIALSSPLAKVIKEALLRLPGDYAVQFKLVSKQWHRFIESWSFARGYDMYNNRDRRPKIRLVGMGTGGSSGYRYVRSTRGALVYIPNRIPSDRFRHDHAFTTGNKNVGLGFDPLMQEHVIVELFYQWRNFKTCRYNITCLLFTCKSRHTCDFLQPPLPVNDMPPAYLAGFLYWMSEPRLSQSKTSAILSFEIATKTFVVIQCPSCALTRHNRSPCESFVVELEGMLCVVLANPFEEELDIWKMEHGQWDRAYRVCLKGWPGYSLGANVVVPMAVDPKDGRILLNTGSKLGLYDPTKRVIENLYDLDEVLRVKQTDETLHVEDKEKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0269800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g16800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0269800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008560 | SBH | 0.474722 | 5.697286 | 1.411121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0176900 | RBH | 0 | 0 | 0.0080805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0174200 | RBH | 0.001908 | 0 | 0.0152985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009940 | RBH | 0.0 | 0.0 | 0.101841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009710 | RBH | 0.0 | 0.0 | 0.0 |
