Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0006810 | OGI:05039880 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:5633236-5638676 | ||||||||
| Gene Symbol | RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25, Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26 | ||||||||||
| DNA seq | atgaagatcattttcgtatttgctctccttgctattgttgcatgcaatgcctctgcgcggtttgatcctcttagtcaaagttataggcaatatcaactacagtcgcatctcctactacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagtatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcagcagtgttgccaacagctcaggctggtagcacaacaatctcactaccaggccattagtattgttcaagcgattgtgcaacagctacaactgcagcaatttagtggtgtctactttgatcagactcaagctcaagcccaaactctgttgaccttcaacttgccatccatatgtggtatctaccctaactactatagtgctcccaggagcattgccactgttggtggtgtctggtactgaattgtaacaatataatagttcgtatgttaaaaataaagtcatacatcatcatgtgtgactgttgaaacttagggtcatataaatctaaataaaatcatcttacctatttaaatagcattcctctatgaggataaatcctattacattatcgtagctaattaccatcacagggactttacaattttactatatgcatgcatttgatcctaagctgctttggctattagatataaatgaagtgcattaagcaagttcaacctttcattcccaataggaacgaacttgaagcacagatgtcaattactatacccctaacaattgatacactatagcagcggttgtagccgcagctggaggattcgctgtcgagcagaccatatacctgaatttaaaccatgtcaaatatccgtaatgaataacaaataattttatattgtgcatatccaatgaataatcaaacatttgcctttcgactgtaatgcttgcatggcctgctattgtattgctctggaaacacatctttaacagatgttgtattatcacatacattacattggaggagaaggatttaagtgatcatatatagaacagaggatatgatgttttagaaaaaagaagattaataatgtcaagaatactttgtgaaacagtgcatgatgcaggcacatcacttgatacattaaaagcgctgtaaaaaatttatgctggggaactaatgcactactactagcctcactaatatcatcagttcgcggtatgtaacaagctaacattctacactgcaccaccccatccattcttgcttttttctatagaacacaagaaggaacatcagtaactggatgcatgtgtgcaccgccagctgccacagtgttggccattatctctttcttcaaggcatttcttcccatcaactcctgcttgacacaagcaggacaaaaatgtagctttggttaagtcaaggggagtcagtccagctatagatgaaccagcgcccttattattgtgattactgccctagctcacacaccggaaatggactcaaatcttaaaggcatgtgagcttctaacgagcccacattccatctaggtaacatgatatattgtaaggctctatttttttcagattattaaaatggattatttgctccatgctttaaaatatatgtttgctccatattctaagtcaagtattttatttagggtaattattttgatcctagaggagacatcctaggatttctctaaacatcatgaaaatagttatagtaaagaaatttcgtaatatttatgtggtgtacatattccaccctcacaaattaattttcaagttaagctcagtagcaaatcgacaagtaaaaaaggacaggtccagcatataaacgttcatgtgcaatgtacatacgaatttatttattttgtttctcaatgttcagatccaatttaaacttggttttttcgttgagtagtaaattgtcattgtactctatattgtcattttgttagggaatctttcattactgtgtgcactgcatcgaagagaaaaaaagggcgtgtaaatgcatatcctctattaaaatccgacttctatatattttgccccattttctctataatttctagtggttattgattgagaacagctacaaattacttactaagcacctttcatgggcactatataactcatgcaattcttaaggtttacgaatgcgaatacaaatagaaattcgctgtgccgacctgttttcaaagattaaaaaattgaaacatcaatcagaaaccattccagaatgggccaaaatttggaaaacaaattttgaattccatggagaaaattaactggctggcaattgcacatttgcactgctttgcccctataaacatcttcgagtagccatttcattattcccagtaaaatattaatactccttaatcaagaactgccatataggtcatttctcttggtacttcagttcgctcatttatttctcataatttaaatttcaaagtaataagcgatagatcaggatccatgatttgaacatgcaactttaaagtaatgcagtaagatatagatcggtgtccatgacttgaacatgcatgaacagtaaccccactcgtgagttaaaaagatagatccatgatttaaacatacattcgcagatatttgatcattatatgttgtaattatattctcataaaaaaaactaaaaatgcttcatagcatttgtatattatgccaatattgagataatttcgatatctcatatgttttagattggaacagatcacgaaagtttttcttcgaaaagttatggtcattaggacatgatggatttgaggtaacaaaatagatgagatttattaaaacccttgaaatagtccaacaatccagcgctaacatttagcacagtgtaattcaaaagaagacaaccacagaaacacacaggggatgttttaaactccaatttttatatatttggcattattcaaattgcaaacaaatatgatgactctctttctcaaagaaacatatgccgttagggtgatcccagcgcttcacttagaatggtttttcatagcattaaatgatatgccacgtaggaaaaaacatgatgtgccattttattaacttaggaaagagaagaaaattgggtcttctcaaaatgatcatcatctaacaaaatgtctctttgtttatttgtgcaaagagtaaatgtgcatcgtgcaatgtcatgcatgctgccaaccaagattaatttctatttagttgaacctgtgcaacatttaaagtgtgaagtaatttttgttggacttgaagcgacaaagcaccttggtcgattaggccatccccaacccatggtgtccatgggtggtgtctagagcagtgagagatcaataaatgcatatatggacactacctccccattgcatcgtttatataccagttttcataggcaaaaaaaaattagtagctctttgcatgtaacattaacagaggagggtcagctgtggcaagcaagcaagcagacgcgggaggggaggcgcgcagcaggcatggtgacggggtagggcgcagcggatcgagatgcgaggatttttttttgggggggtggggtggggggagagaaacgagtcatccaacccaacgcggatttagctagtttccagtgccttggaacagccgccgaaacggtgtcgcgcatgcgacctggtttctatgtttttgcttctttctcttcttttattccgttgccacatcaactttttgtctagttggcagcctaattaattctatggaaaccaggtgacatggagggttggggacatggtggaaaaaaccggaacgggccgacagttcaaccggaaaaaaccagaacccgttcagttcaaaagaaagaccggacatgcatatgacccgctttgaaccggcagaaccggtcggtttttctatgaaccggtcattaaaccgtccccggttagaccgaacaagccacaataatcttgaaatgggccttgatgtggcccaattggtctgcctagagcgttttggttggcaaaaatcaatctcctattctcggcacgtgtgatatacaatggtaagtgagatatacaattctcggcacggctacattacaaggtgtcgcattgtgtcaatgtttggttaatttgctagattcacataatacatgccaggaagttcagaacaatgtgttgcctttcaccggaaaactttgttggagcaaatgccttcttcttttttgcttctgcttcttgagtccatgtggaggaagcagtagatagctgatgatatcaggattccttctgtgtctgtgtaggtgtagcaacaccactataatttttatttagcaacacaatatcaatttggtctataaaagtatgaattaaatcaatccccaaccacaattagagtaagttggtgagttattgtaaagctctgcaaagttaatttaaaagttattgcattaacttatttcgtatcacaaacaagttttcacaagagtattaatggaacaatgaaaaccattgaacatactataattttttttcttactgaaattatataattcaaagagcataaacccacacagtcgtaaagttccacgtgtagtgcattatcaaaataatagcttacaaaacataacaaacttagtttcaaaagttgcaatccttatcacattgacacataaagtgagcgatgagtcatgtcattatttttttgctcaccatcatgtatatatgatgggcataaaagttactttgatgatgatatcaaagaacatttttaggtgcacctaacagaatatccaaataatatgactcacttagatcctaatatagcatcaagcaaaactaacactctaaagcaaccgatagggaaacatctataaatagacaagcataatgaaaaccctcctcatccttcacacaattcaaacattatagttgaagcatagtagtagaatcctacaaaaatgaagatcattttcgtatttgctctccttgctattgttgcatgcaacgcttctgcacggtttgatgctcttagtcaaagttatagacaatatcaactacaatcgcatctcctgctacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagcatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcaacagtgttgccaacagctcaggctggtagcgcaacaatctcactaccaggccattagtagcgttcaggcgattgtgcagcaactacagctgcagcaggtcggtgttgtctactttgatcagactcaagctcaagctcaagctttgctggccttaaacttgccatccatatgtggtatctatcctaactactacattgctccgaggagcattcccaccgttggtggtgtctggtactga
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| CDS seq | atgaagatcattttcgtatttgctctccttgctattgttgcatgcaatgcctctgcgcggtttgatcctcttagtcaaagttataggcaatatcaactacagtcgcatctcctactacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagtatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcagcagtgttgccaacagctcaggctggtagcacaacaatctcactaccaggccattagtattgttcaagcgattgtgcaacagctacaactgcagcaatttagtggtgtctactttgatcagactcaagctcaagcccaaactctgttgaccttcaacttgccatccatatgtggtatctaccctaactactatagtgctcccaggagcattgccactaatcctacaaaaatgaagatcattttcgtatttgctctccttgctattgttgcatgcaacgcttctgcacggtttgatgctcttagtcaaagttatagacaatatcaactacaatcgcatctcctgctacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagcatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcaacagtgttgccaacagctcaggctggtagcgcaacaatctcactaccaggccattagtagcgttcaggcgattgtgcagcaactacagctgcagcaggtcggtgttgtctactttgatcagactcaagctcaagctcaagctttgctggccttaaacttgccatccatatgtggtatctatcctaactactacattgctccgaggagcattcccaccgttggtggtgtctggtactga
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| Protein seq | MKIIFVFALLAIVACNASARFDPLSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQYSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQSHYQAISIVQAIVQQLQLQQFSGVYFDQTQAQAQTLLTFNLPSICGIYPNYYSAPRSIATNPTKMKIIFVFALLAIVACNASARFDALSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQHSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQSHYQAISSVQAIVQQLQLQQVGVVYFDQTQAQAQALLALNLPSICGIYPNYYIAPRSIPTVGGVWY |
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| Function | 13 kDa prolamin C [UniProtKB/Swiss-Prot:P17048] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0006810 | OsKeNa_07g0006810.01 | Chr07 | 5633236 | 5638676 | + | NAM | ||
| CDS seq | atgaagatcattttcgtatttgctctccttgctattgttgcatgcaatgcctctgcgcggtttgatcctcttagtcaaagttataggcaatatcaactacagtcgcatctcctactacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagtatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcagcagtgttgccaacagctcaggctggtagcacaacaatctcactaccaggccattagtattgttcaagcgattgtgcaacagctacaactgcagcaatttagtggtgtctactttgatcagactcaagctcaagcccaaactctgttgaccttcaacttgccatccatatgtggtatctaccctaactactatagtgctcccaggagcattgccactaatcctacaaaaatgaagatcattttcgtatttgctctccttgctattgttgcatgcaacgcttctgcacggtttgatgctcttagtcaaagttatagacaatatcaactacaatcgcatctcctgctacagcaacaagtgctcagcccatgcagtgagttcgtaaggcaacagcatagcatagtggcaacccccttctggcaaccagctacgtttcaattgataaacaaccaagtcatgcagcaacagtgttgccaacagctcaggctggtagcgcaacaatctcactaccaggccattagtagcgttcaggcgattgtgcagcaactacagctgcagcaggtcggtgttgtctactttgatcagactcaagctcaagctcaagctttgctggccttaaacttgccatccatatgtggtatctatcctaactactacattgctccgaggagcattcccaccgttggtggtgtctggtactga
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| Protein seq | MKIIFVFALLAIVACNASARFDPLSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQYSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQSHYQAISIVQAIVQQLQLQQFSGVYFDQTQAQAQTLLTFNLPSICGIYPNYYSAPRSIATNPTKMKIIFVFALLAIVACNASARFDALSQSYRQYQLQSHLLLQQQVLSPCSEFVRQQHSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQSHYQAISSVQAIVQQLQLQQVGVVYFDQTQAQAQALLALNLPSICGIYPNYYIAPRSIPTVGGVWY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0206400 | RBH | 0.0 | 0.0 | 2.457647 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g10580 | SBH | 0.0 | 0.0 | 3.368397 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0206400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0006830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0012150 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0006700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0006620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0006840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0097500 | RBH | 0 | 0.1517725 | 1.2523095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0007320 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0098900 | RBH | 0 | 0.026781 | 1.796726 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0006750 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0006770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0006830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007570 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0006760 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G006900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0006760 | RBH | 0.0 | 0.0 | 0.0 |
