Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0004000 | OGI:07010130 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:3356540-3360274 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcatcgtaatgaaactatttcaggtggtgtttcgttttctacaagcttgatctcgccatcccgacaacagaagcccggcggttcgtactggaacctcttggcaccacagtgtttacagtcaggctcaggtttcagaacattttcgctctgtgggatgttgctatacacaaagtcgaacggatcaggaattgaagagctcggtgcttgcgtgtcatcgtcatcggattgtaccatctcgtcatcctcatcatcgcctggtatagcggaaaggagttatagattgaaaaatccatacaagtgaaagtgagagatttaggtatgatggcgacagtacctagcccagcaaacatgtagtgttcatcgtcggtgtcatcatccatgaaggaatccatatctaatttagttgaatataaagtgagtatgaggaagggtacaaattgcgagtataaataaaaacatatatagatgataccatcatcaaagttagacgatcgtgcaagatgatctgcagcaagttcagtttgcaggctcgatgtagctggcacatcaccggttgtttcaaaggaaggcgttggatttagcaacgacgagctacaatcctcagggcactccaatgcaatcgattgagtgcatggtttgtcacgcctagctgcatacagttcattacgtcgtgccagatgagcagaccgttctccaggagtaacactttgtcgtcttgatcgctggcgagcattcatatcatgtatttccacatccggcagagtttgccttgcaaccctacggcgatcattcatctctagtctctgttcattggttagtgcttgacgtcttgttctctgtcgatcgaccttagcttgcttctgctccggtgtaagagttgcattacgcaacttgacgtctctgttttgggttgtttgaattacgcagctcattggaacttcatttggaccatagtgagctacattgttgatgattgtaaatgggagacgtctgggtgtgatattaagatgggaagcatcacttcgttctattaaaacatgaaaccatcaatttccattatgtcgaataatacactgttcatccaaggtgtacgtaacaacgagatgaattggtcttaccttcaacgtagaagaatcgttcacttccaattggcatgtcattaaatcagcagcacttacattggaaagcttgccaagtggggctgttcacacggcgaaaaagcgaccgaagatactttttattagtacagatacatattacaactcaagctaaagcggatggtaaaaacaaaatattggatccttttgggtacttacctacaccactattggttgcagactttaaaacttgactttcctccttcttccgttttcttctctcatggtccttcttgttcctctcatccttttgctcctgggtcaatgatgtgtaccagtttctagcacgctttcttgcaacttcagcatgggtaaggttagtaacatctccatgcgcacctgtgcacataggcaaattgctgggtgtactgaaggatgcatcgcggtcatccgcaaatgactgactattaggcgtgacaataggatgcacttcatggcccaaatcagaagaatatagtcagcgttggttgatacagatggatatcaaattaaatttggaaacacacattctgatgaagcataccatttgaagctattggagtgttctgttcagagttgtcacagttttctttagagccgtgacactcttcgtcgtttcttcgaacaacacataacgacttggctctacccttgccccgtctattagtgaaaccgagaccatttgtatttgttatatcagcaagagggtctgagaaaggaacacatggtcgaaattagtacacagaatttgtgcatatggctaaataagatgcacatagctaagctaatgaaactaaaacctgatgttgtacttgatggtgcggtgcccccaacaaactctttcatttcagtctttttcagaatctagctttcgaaaccaatcattatgaaaaaactaaaagctacagatcccatagcaaagttaagaagggagcagtgaagaaattggccgtaccttcaattcagggaatgagattgtgagggatagaagcagctgttcgctgtgatacgggacgaggcatgggtagtgctactgtctccgtggatcacgcctactttatggtggtaagtaaattcttaagatgcttcaaaacaaatttaacatttcaacatggaattgatctagctgtcaatggcatgaatcacttcaaataatgtaaggtctgatttgagttttcagtaacaatctatctatagcaggtactttgctccacatcttaatagcaaccatttaaatgtactttgaatggagcatacagaattcaaagtcaggttgagttatagcaggtactttgctccacatcttaatagcagccatttaaatgtactttgaatggagcatacagaattcaaagtcaggttgagtgtgtcatctagccatttatgttaaaaataggttggaaacttgaaattcgaagtgccacaataccagagccaggttaaactcgaaataccaaactattaccagccaagtccaagtaccacagcgtggaatagaaacgttcatatatatgcaaggctacagaaccatattggaccaaattgtgtagaataccttgctattaacagactggtgttgttaagtggcaaagaaaacatggtaaaacaaagttatcatcttgcaatactgcaacttggaaatagccaggaaaaggaatagcagatacaactcacctagtgtcagattgcagcaacactgcatcagaaaactgctttaggttcaccaggccaaatctgcaacagaaatttgctcggctcattaatctgaacggatatacaattcaagaaaattacattttagcaagattaaccctgctattgtgcatcgcagccatgggcaaaccgaagagactggcacctaaatacatctgttcgcaactgagcatgcaagctccaacctgtttggttctataatgactataagtggtactttcagattcagcatatgcagagacttataacagcaggctagtatcggtctgaaattcatttcctattgatccccaacgagcagaaaagagcaggctggtactttcagattcagcatatgcagagacttaaaacagtaggctagtatcggtctgaaagtcatttcctattgatccccaatgagcagaaaagagcaggcaagtataggtcataaaaaataaagtgcatcggtgttatcctgaccattttagttttgcagcaaaagaacgagcgaccgcggccggggagatctgttcggccctgagtcccagcggcagaggtggagtacggatggacggcgaggcggcactgagggaatggtgatcgctggtgacgacgacgcacgctacgacggcggctgcccggcggcagaggtgtagtacagacggacggcgaggtgacacagagggaatgatgatcgcaggtgtctggtgacgacgacgcacgctacgacggcggctgcgagcgaagaaaggtggtcggcgatgaggggctcgaccccgtcgcaactcctcccgagcggcacgaagggcggcggcggagcggcggcggcaggcgtgagaggggcggcggagcggcagcggcaggcgtggcgtggcggcgggggcgaggcgtttttagggcgtgggt
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| CDS seq | atggctgcgatgcacaatagcaggattctgaaaaagactgaaatgaaagagtttgttgggggcaccgcaccatcaagtacaacatcagaccctcttgctgatataacaaatacaaatggtctcggtttcactaatagacggggcaagggtagagccaagtcgttatgtgttgttcgaagaaacgacgaagagtgtcacggctctaaagaaaactgtgacaactctgaacagaacactccaatagcttcaaatgtgcatcctattgtcacgcctaatagtcagtcatttgcggatgaccgcgatgcatccttcagtacacccagcaatttgcctatgtgcacaggtgcgcatggagatgttactaaccttacccatgctgaagttgcaagaaagcgtgctagaaactggtacacatcattgacccaggagcaaaaggatgagaggaacaagaaggaccatgagagaagaaaacggaagaaggaggaaagtcaagttttaaagtctgcaaccaatagtggtgtagccccacttggcaagctttccaatgtaagtgctgctgatttaatgacatgccaattggaagtgaacgattcttctacgttgaagaacgaagtgatgcttcccatcttaatatcacacccagacgtctcccatttacaatcatcaacaatgtag
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| Protein seq | MAAMHNSRILKKTEMKEFVGGTAPSSTTSDPLADITNTNGLGFTNRRGKGRAKSLCVVRRNDEECHGSKENCDNSEQNTPIASNVHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRARNWYTSLTQEQKDERNKKDHERRKRKKEESQVLKSATNSGVAPLGKLSNVSAADLMTCQLEVNDSSTLKNEVMLPILISHPDVSHLQSSTM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0004000 | OsKeNa_07g0004000.01 | Chr07 | 3357499 | 3359511 | - | NAM | ||
| CDS seq | atggctgcgatgcacaatagcaggattctgaaaaagactgaaatgaaagagtttgttgggggcaccgcaccatcaagtacaacatcagaccctcttgctgatataacaaatacaaatggtctcggtttcactaatagacggggcaagggtagagccaagtcgttatgtgttgttcgaagaaacgacgaagagtgtcacggctctaaagaaaactgtgacaactctgaacagaacactccaatagcttcaaatgtgcatcctattgtcacgcctaatagtcagtcatttgcggatgaccgcgatgcatccttcagtacacccagcaatttgcctatgtgcacaggtgcgcatggagatgttactaaccttacccatgctgaagttgcaagaaagcgtgctagaaactggtacacatcattgacccaggagcaaaaggatgagaggaacaagaaggaccatgagagaagaaaacggaagaaggaggaaagtcaagttttaaagtctgcaaccaatagtggtgtagccccacttggcaagctttccaatgtaagtgctgctgatttaatgacatgccaattggaagtgaacgattcttctacgttgaagaacgaagtgatgcttcccatcttaatatcacacccagacgtctcccatttacaatcatcaacaatgtag
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| Protein seq | MAAMHNSRILKKTEMKEFVGGTAPSSTTSDPLADITNTNGLGFTNRRGKGRAKSLCVVRRNDEECHGSKENCDNSEQNTPIASNVHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRARNWYTSLTQEQKDERNKKDHERRKRKKEESQVLKSATNSGVAPLGKLSNVSAADLMTCQLEVNDSSTLKNEVMLPILISHPDVSHLQSSTM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0004000 | OsKeNa_07g0004000.02 | Chr07 | 3356540 | 3360274 | - | IsoSeq | ||
| CDS seq | ccacgccctaaaaacgcctcgcccccgccgccacgccacgcctgccgctgccgctccgccgcccctctcacgcctgccgccgccgctccgccgccgcccttcgtgccgctcgggaggagttgcgacggggtcgagcccctcatcgccgaccacctttcttcgctcgcagccgccgtcgtagcgtgcgtcgtcgtcaccagacacctgcgatcatcattccctctgtgtcacctcgccgtccgtctgtactacacctctgccgccgggcagccgccg
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| Protein seq | PRPKNASPPPPRHACRCRSAAPLTPAAAAPPPPFVPLGRSCDGVEPLIADHLSSLAAAVVACVVVTRHLRSSFPLCHLAVRLYYTSAAGQPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.063723 | 1.550216 | 1.056715 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0164700 | RBH | 0.439502 | 0.619368 | 1.216069 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07030 | RBH | 0.305181 | 0.427742 | 0.294512 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0164700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004020 | RBH | 0.0 | 1.485712 | 2.438591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003890 | RBH | 0.000000 | 4.674731 | 4.665294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003840 | RBH | 0.207911 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003930 | RBH | 0.000000 | 5.792843 | 13.455700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0057400 | RBH | 0.01465 | 0.7241645 | 0.346542 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009710 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0060700 | RBH | 1.4498125 | 8.657779 | 6.9319895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0003940 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009190 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004010 | RBH | 0.0 | 0.0 | 0.319304 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026100 | SBH | 0.0 | 0.0 | 0.682041 |
