Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0001370 | OGI:07003280 | 8/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:1103936-1105306 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagaaatggtggcctcaactgttgtccaagaggttttgggcggagccgtctcctacttgtccagcaaccgggagaaggtgtccgagaggcacaacttggagaagttggagatggcacacgctcaattggagcacgccctagagagatcttcaaagctacccatcacagatgtttccttgcttcgtcagaggaggatgttcaaacgtgcctatgaggagtgcagtgaagtggtggagaaatgcaaggtgcggattttggaagttgctgaagagcaaggggtaacacacagctattttcccaagcagtttgtccaagccgtaaaagccatgaaatcatatgtcttgtctttccttggcatgaacaagcaatatcttttgagttgctcccatgttcgcagattcgaatggtttgcaaagaaggctggtaagtttgcgagggatgtggagactggccgtacactttggcactacaacttttttagctctctcatcagaccacttctagaagggaaacatctcaagtatgacatgccattgcaaggaagcaaaacccttggtattacaatagtacctgtatctcttgaagggcgtggcgtagaggcattgatacagttaaataaggaggatagcagaatgccactgaaaaatttttgtctgttgctgatactacgactctcagagagcacggacatagttaggattatcatcaattgcttgcagttacttgggcctcatttcacgcgtttggctaaagatgcaattggtcaacttgctgctctacaacactcacatcctcaagacctcgaaccactgctagcacttcaggccgtggactaccatcggagctttcttgcctttcgagctacagttgctcgccctgatccattttgttgcagagaaaagaggctcgatccttgtgctgacaacaccatctcgcccaatttaccatatgatattccagaacaagttatctatgtgcgctgcagcagctacatttcggctgttgagtacaattacttgtacaactcaagcaatattgtgagggattggtctatcctgaagatggtgatcaatatttcgcctcatttctcgcaccctgaagccaatcgggggagttacagtagtcggggagcaactgataagtgtatgtatgctagtctgcacgaaatgcaggagatggcagtgttagtgcccaaggtaatggattgcttcgtctgtcaacctgacttggggttttattcactgtcttttcattcagttcatggttatggatacctttgtctgatgaagccgcgcatccggagctgcaaaaccaattctagttgcagatccaaggccaggagagtatcaaagacaagacataactag
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| CDS seq | atggcagaaatggtggcctcaactgttgtccaagaggttttgggcggagccgtctcctacttgtccagcaaccgggagaaggtgtccgagaggcacaacttggagaagttggagatggcacacgctcaattggagcacgccctagagagatcttcaaagctacccatcacagatgtttccttgcttcgtcagaggaggatgttcaaacgtgcctatgaggagtgcagtgaagtggtggagaaatgcaaggtgcggattttggaagttgctgaagagcaaggggtaacacacagctattttcccaagcagtttgtccaagccgtaaaagccatgaaatcatatgtcttgtctttccttggcatgaacaagcaatatcttttgagttgctcccatgttcgcagattcgaatggtttgcaaagaaggctggtaagtttgcgagggatgtggagactggccgtacactttggcactacaacttttttagctctctcatcagaccacttctagaagggaaacatctcaagtatgacatgccattgcaaggaagcaaaacccttggtattacaatagtacctgtatctcttgaagggcgtggcgtagaggcattgatacagttaaataaggaggatagcagaatgccactgaaaaatttttgtctgttgctgatactacgactctcagagagcacggacatagttaggattatcatcaattgcttgcagttacttgggcctcatttcacgcgtttggctaaagatgcaattggtcaacttgctgctctacaacactcacatcctcaagacctcgaaccactgctagcacttcaggccgtggactaccatcggagctttcttgcctttcgagctacagttgctcgccctgatccattttgttgcagagaaaagaggctcgatccttgtgctgacaacaccatctcgcccaatttaccatatgatattccagaacaagttatctatgtgcgctgcagcagctacatttcggctgttgagtacaattacttgtacaactcaagcaatattgtgagggattggtctatcctgaagatggtgatcaatatttcgcctcatttctcgcaccctgaagccaatcgggggagttacagtagtcggggagcaactgataagtttcatggttatggatacctttgtctgatgaagccgcgcatccggagctgcaaaaccaattctagttgcagatccaaggccaggagagtatcaaagacaagacataactag
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| Protein seq | MAEMVASTVVQEVLGGAVSYLSSNREKVSERHNLEKLEMAHAQLEHALERSSKLPITDVSLLRQRRMFKRAYEECSEVVEKCKVRILEVAEEQGVTHSYFPKQFVQAVKAMKSYVLSFLGMNKQYLLSCSHVRRFEWFAKKAGKFARDVETGRTLWHYNFFSSLIRPLLEGKHLKYDMPLQGSKTLGITIVPVSLEGRGVEALIQLNKEDSRMPLKNFCLLLILRLSESTDIVRIIINCLQLLGPHFTRLAKDAIGQLAALQHSHPQDLEPLLALQAVDYHRSFLAFRATVARPDPFCCREKRLDPCADNTISPNLPYDIPEQVIYVRCSSYISAVEYNYLYNSSNIVRDWSILKMVINISPHFSHPEANRGSYSSRGATDKFHGYGYLCLMKPRIRSCKTNSSCRSKARRVSKTRHN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0001370 | OsKeNa_07g0001370.01 | Chr07 | 1103936 | 1105306 | + | NAM | ||
| CDS seq | atggcagaaatggtggcctcaactgttgtccaagaggttttgggcggagccgtctcctacttgtccagcaaccgggagaaggtgtccgagaggcacaacttggagaagttggagatggcacacgctcaattggagcacgccctagagagatcttcaaagctacccatcacagatgtttccttgcttcgtcagaggaggatgttcaaacgtgcctatgaggagtgcagtgaagtggtggagaaatgcaaggtgcggattttggaagttgctgaagagcaaggggtaacacacagctattttcccaagcagtttgtccaagccgtaaaagccatgaaatcatatgtcttgtctttccttggcatgaacaagcaatatcttttgagttgctcccatgttcgcagattcgaatggtttgcaaagaaggctggtaagtttgcgagggatgtggagactggccgtacactttggcactacaacttttttagctctctcatcagaccacttctagaagggaaacatctcaagtatgacatgccattgcaaggaagcaaaacccttggtattacaatagtacctgtatctcttgaagggcgtggcgtagaggcattgatacagttaaataaggaggatagcagaatgccactgaaaaatttttgtctgttgctgatactacgactctcagagagcacggacatagttaggattatcatcaattgcttgcagttacttgggcctcatttcacgcgtttggctaaagatgcaattggtcaacttgctgctctacaacactcacatcctcaagacctcgaaccactgctagcacttcaggccgtggactaccatcggagctttcttgcctttcgagctacagttgctcgccctgatccattttgttgcagagaaaagaggctcgatccttgtgctgacaacaccatctcgcccaatttaccatatgatattccagaacaagttatctatgtgcgctgcagcagctacatttcggctgttgagtacaattacttgtacaactcaagcaatattgtgagggattggtctatcctgaagatggtgatcaatatttcgcctcatttctcgcaccctgaagccaatcgggggagttacagtagtcggggagcaactgataagtttcatggttatggatacctttgtctgatgaagccgcgcatccggagctgcaaaaccaattctagttgcagatccaaggccaggagagtatcaaagacaagacataactag
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| Protein seq | MAEMVASTVVQEVLGGAVSYLSSNREKVSERHNLEKLEMAHAQLEHALERSSKLPITDVSLLRQRRMFKRAYEECSEVVEKCKVRILEVAEEQGVTHSYFPKQFVQAVKAMKSYVLSFLGMNKQYLLSCSHVRRFEWFAKKAGKFARDVETGRTLWHYNFFSSLIRPLLEGKHLKYDMPLQGSKTLGITIVPVSLEGRGVEALIQLNKEDSRMPLKNFCLLLILRLSESTDIVRIIINCLQLLGPHFTRLAKDAIGQLAALQHSHPQDLEPLLALQAVDYHRSFLAFRATVARPDPFCCREKRLDPCADNTISPNLPYDIPEQVIYVRCSSYISAVEYNYLYNSSNIVRDWSILKMVINISPHFSHPEANRGSYSSRGATDKFHGYGYLCLMKPRIRSCKTNSSCRSKARRVSKTRHN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.379266 | 0.0 | 0.759755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0120800 | RBH | 0.759040 | 1.296106 | 1.493647 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02960 | RBH | 0.587888 | 0.871877 | 0.384277 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0120800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001360 | RBH | 0.451401 | 4.621561 | 2.307692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001460 | SBH | 0.020660 | 0.0 | 0.255331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001320 | SBH | 0.029642 | 0.000000 | 0.819138 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001320 | RBH | 0.096516 | 0.046927 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001310 | RBH | 1.642343 | 3.638077 | 3.407185 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0019600 | SBH | 0.8657365 | 2.0345275 | 5.517556 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001340 | RBH | 0.112941 | 0.058729 | 0.538609 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0016900 | RBH | 1.2295755 | 5.1231425 | 3.16026 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001450 | SBH | 0.059387 | 0.066535 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001480 | SBH | 0.223649 | 1.586285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001450 | SBH | 0.263959 | 9.348996 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001450 | RBH | 0.000000 | 0.000000 | 0.257012 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001460 | SBH | 0.029762 | 0.523747 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001410 | SBH | 0.078079 | 0.164521 | 0.353196 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001490 | SBH | 0.0 | 3.442741 | 0.658156 |
