Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0028050 | OGI:06083220 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:30411091-30414059 | ||||||||
| Gene Symbol | RLCK217, OsRLCK217 | ||||||||||
| DNA seq | acgtaatcaatgatgaaattaattaattcccaaacatgtacatctatacatataaccggccggcggtggcggtggcggcggcggcggcggctgccggccgtgcagcggcggcagcagcaccggcgtggtggtggtggtcggcgaggacggcctcgaggacgtgcacgaccctgcccatggtgggcctgaccttggggttctggctgaggcagtcgtaggcgaggcgcgccacccgctcgacggcggcgtcgacgccgccgccgcagtccgccgccggcgccggcagcgccatccggcggtcgacgatcctctccagcttcttgggccggatgaggatggggcgggcccagtcgacgaggttgcacttgctgcagccggcggccggcggctcgagcgcgcggcggccgacgagcatctcgagcaggacgacgccgaagccgtagacgtcgctcatcgcggtgaggtggcccgtggcgacgtactccggcgccgcgtagccgtacgtccccatcaccctcgtcgacacgtgcgtcttccctccccgcggcccctccttcgccagcccgaaatccgacagcttcgccttcatatcctattacacccccaaattattaagctaaattaacatttgaaaattcagattgttctctcaatttatagaaatactaaaaaaaggtattaccgttttaacggaatagttacatcaacatggtaactatatctataaggtattcatatacggtacccgatatcaaatctggtacttacgaagatacctatacctacaaactacaataccctactgatgtcagcatgcataaaactattccatccatttcagattatacatcattttgacttttcaaactattttaaattgatcaagtttgtagaaaaaaatattttcaacccaaaataaatatattatgaaaatatatttaattatagatttaatgaaactaatttggtgttataaatattattaaatttgtctataaatttagtcaaacttaaagtattttgactttaactaaaatcaaaacaacttataatttcaaacggatgatttcaaacggatggagtattttgttgcaatggtatagcgttatgtagtaaccctcatgaatttgtatttgagtaagataattactaactgtgtcaagcaaaatgttggaggtcttaaagtcgcggtagatgatcggccggtcgccgccgtggaggaaggcgaggcccctcgccacgtccaaggcgatcttcatccgggtcgtccatgagaggttgcatgaacctggccgggatcgttaaccagtttcaacctttgcattgcatgcatatgctcttgatcatagtgatcattagcaacatccttagcaaaataaattaatggcgagaaattaatttaagctcacgtcggaagaggtggttctcgaggctgccattggccatgtactcgtagaccagcagccggtgatcgtcctcgcagcagtagccgatgagctccaccagattcggatggttgtactgccccaggtagctcacttccgtcttcatttgattaatttcaattttatttgattaaattagtgcaacattatagcaagtacaataaacacatatcaaagaagaaaaaggaagaaaatgggttatagattgtagccagctccaacacagactccattacattttatatgtacgagagatatgaccggttaataatggtgtagtatatttgtaattattatatgaatggactattaaaatagctataaatgattagcagcttgcatgagcacaagaatggcgagatgatgatgtgtgcacactgaccagccattccctgtcgccctggtggccgaaggggttgagctgcttgacggcgacgacggcgccatggatgaggcccttgtagacgacgccgaagccgccctcgccgacgatctgttcggggctgaagtcggcggtggcggccctgagctggtcgtaggtgaactgctcgaggttggtcccgtacgccggcatggtccggaactcctccacgtccttgggcacggccagcatcaccgccgccgtctccgacaccgtcttcctcagcctcggcggcggcgacggcgacggcggcgccgacttgggcgcaatcgcatcgcctgcattcacatacacacatggcaataatcaaacaaacgacccgagacacctataaatcgggcgctcgatcttttcttaaaaaaaacggacggtgtttcactgagcggatcgaaattgtttcactaagtagatcggaaatgtttcgatcgtttaaaaagctgaaacacaaccaaatgagacattttgctacaacgtatgaaacagcagtttttaaagctgtttcactatatataaaaacaatgtttcagcaaatagtgaaatgatgtttcaattcactgcaacatttgatctatacatagtgaaacaacacgagtatacttgctgaaacattgttggtggaaaaaaaatgaaacagatccccttaataaaccgtttctgtaatatatgggtgatttgttgcaacggcacgtgtgatggggaaggcgcggaagagcgggcatccgatgcatgcagtccgatttgaagaattttcgcaaaccaccgattcagatcatcagaacgcatgcgtggcgtacctcctcggcggcgggatgagcgcgccgccaccgcacgtatgtctccgcagctggcaatgaaccaccggtgcatcttgaagatgaggaaagccagcacgccggccggttgattagtttctcacacgcacgtagctaatcaatggaggtcgttggatatagcaagaatgtgatggcggtgtccctcctcaccggcgggcgcggtggtgggggcggccaatgaatggcaacctccgaccaccacacgccgggagggaaagggaaggggggagaggaggaggagagaagtggtgggcaaaagcgcgcgatggc
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| CDS seq | atgcaccggtggttcattgccagctgcggagacatacgtgcggtggcggcgcgctcatcccgccgccgaggaggcgatgcgattgcgcccaagtcggcgccgccgtcgccgtcgccgccgccgaggctgaggaagacggtgtcggagacggcggcggtgatgctggccgtgcccaaggacgtggaggagttccggaccatgccggcgtacgggaccaacctcgagcagttcacctacgaccagctcagggccgccaccgccgacttcagccccgaacagatcgtcggcgagggcggcttcggcgtcgtctacaagggcctcatccatggcgccgtcgtcgcctacaaccatccgaatctggtggagctcatcggctactgctgcgaggacgatcaccggctgctggtctacgagtacatggccaatggcagcctcgagaaccacctcttccgacgttcatgcaacctctcatggacgacccggatgaagatcgccttggacgtggcgaggggcctcgccttcctccacggcggcgaccggccgatcatctaccgcgactttaagacctccaacattttgcttgacacagatatgaaggcgaagctgtcggatttcgggctggcgaaggaggggccgcggggagggaagacgcacgtgtcgacgagggtgatggggacgtacggctacgcggcgccggagtacgtcgccacgggccacctcaccgcgatgagcgacgtctacggcttcggcgtcgtcctgctcgagatgctcgtcggccgccgcgcgctcgagccgccggccgccggctgcagcaagtgcaacctcgtcgactgggcccgccccatcctcatccggcccaagaagctggagaggatcgtcgaccgccggatggcgctgccggcgccggcggcggactgcggcggcggcgtcgacgccgccgtcgagcgggtggcgcgcctcgcctacgactgcctcagccagaaccccaaggtcaggcccaccatgggcagggtcgtgcacgtcctcgaggccgtcctcgccgaccaccaccaccacgccggtgctgctgccgccgctgcacggccggcagccgccgccgccgccgccaccgccaccgccggccggttatatgtatag
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| Protein seq | MHRWFIASCGDIRAVAARSSRRRGGDAIAPKSAPPSPSPPPRLRKTVSETAAVMLAVPKDVEEFRTMPAYGTNLEQFTYDQLRAATADFSPEQIVGEGGFGVVYKGLIHGAVVAYNHPNLVELIGYCCEDDHRLLVYEYMANGSLENHLFRRSCNLSWTTRMKIALDVARGLAFLHGGDRPIIYRDFKTSNILLDTDMKAKLSDFGLAKEGPRGGKTHVSTRVMGTYGYAAPEYVATGHLTAMSDVYGFGVVLLEMLVGRRALEPPAAGCSKCNLVDWARPILIRPKKLERIVDRRMALPAPAADCGGGVDAAVERVARLAYDCLSQNPKVRPTMGRVVHVLEAVLADHHHHAGAAAAAARPAAAAAAATATAGRLYV |
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| Function | Probable serine/threonine-protein kinase PBL17 [UniProtKB/Swiss-Prot:Q8H1E3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0028050 | OsKeNa_06g0028050.01 | Chr06 | 30411134 | 30414059 | - | NAM | ||
| CDS seq | atgcaccggtggttcattgccagctgcggagacatacgtgcggtggcggcgcgctcatcccgccgccgaggaggcgatgcgattgcgcccaagtcggcgccgccgtcgccgtcgccgccgccgaggctgaggaagacggtgtcggagacggcggcggtgatgctggccgtgcccaaggacgtggaggagttccggaccatgccggcgtacgggaccaacctcgagcagttcacctacgaccagctcagggccgccaccgccgacttcagccccgaacagatcgtcggcgagggcggcttcggcgtcgtctacaagggcctcatccatggcgccgtcgtcgcctacaaccatccgaatctggtggagctcatcggctactgctgcgaggacgatcaccggctgctggtctacgagtacatggccaatggcagcctcgagaaccacctcttccgacgttcatgcaacctctcatggacgacccggatgaagatcgccttggacgtggcgaggggcctcgccttcctccacggcggcgaccggccgatcatctaccgcgactttaagacctccaacattttgcttgacacagatatgaaggcgaagctgtcggatttcgggctggcgaaggaggggccgcggggagggaagacgcacgtgtcgacgagggtgatggggacgtacggctacgcggcgccggagtacgtcgccacgggccacctcaccgcgatgagcgacgtctacggcttcggcgtcgtcctgctcgagatgctcgtcggccgccgcgcgctcgagccgccggccgccggctgcagcaagtgcaacctcgtcgactgggcccgccccatcctcatccggcccaagaagctggagaggatcgtcgaccgccggatggcgctgccggcgccggcggcggactgcggcggcggcgtcgacgccgccgtcgagcgggtggcgcgcctcgcctacgactgcctcagccagaaccccaaggtcaggcccaccatgggcagggtcgtgcacgtcctcgaggccgtcctcgccgaccaccaccaccacgccggtgctgctgccgccgctgcacggccggcagccgccgccgccgccgccaccgccaccgccggccggttatatgtatag
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| Protein seq | MHRWFIASCGDIRAVAARSSRRRGGDAIAPKSAPPSPSPPPRLRKTVSETAAVMLAVPKDVEEFRTMPAYGTNLEQFTYDQLRAATADFSPEQIVGEGGFGVVYKGLIHGAVVAYNHPNLVELIGYCCEDDHRLLVYEYMANGSLENHLFRRSCNLSWTTRMKIALDVARGLAFLHGGDRPIIYRDFKTSNILLDTDMKAKLSDFGLAKEGPRGGKTHVSTRVMGTYGYAAPEYVATGHLTAMSDVYGFGVVLLEMLVGRRALEPPAAGCSKCNLVDWARPILIRPKKLERIVDRRMALPAPAADCGGGVDAAVERVARLAYDCLSQNPKVRPTMGRVVHVLEAVLADHHHHAGAAAAAARPAAAAAAATATAGRLYV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0028050 | OsKeNa_06g0028050.02 | Chr06 | 30411091 | 30414050 | - | IsoSeq | ||
| CDS seq | cgcttttgcccaccacttctctcctcctcctctccccccttccctttccctcccggcgtgtggtggtcggaggttgccattcattggccgcccccaccaccgcgcccgccggtgaggagggacaccgccatcacattcttgctatatccaacgacctccatt |
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| Protein seq | RFCPPLLSSSSPPFPFPPGVWWSEVAIHWPPPPPRPPVRRDTAITFLLYPTTSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 13.724280 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0703000 | RBH | 0.0 | 0.0 | 10.190350 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48980 | RBH | 0.0 | 0.0 | 2.569624 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0703000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028240 | RBH | 0.0 | 0.0 | 4.056613 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028200 | RBH | 0.0 | 0.0 | 8.025992 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028280 | RBH | 0.0 | 0.0 | 5.217377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0466800 | RBH | 0.969338 | 2.218158 | 3.9253145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027650 | RBH | 0.0 | 0.0 | 5.547402 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0450400 | RBH | 0.0066555 | 0.021131 | 0.036725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028490 | RBH | 0.0 | 0.0 | 0.770507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027990 | RBH | 0.0 | 0.0 | 3.559152 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028080 | RBH | 0.0 | 0.0 | 21.576981 |
