Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0027390 | OGI:06081750 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:29879932-29883345 | ||||||||
| Gene Symbol | prx90 | ||||||||||
| DNA seq | agttggcgcttgggtttggggtttcgtttcgtgtcccaaggaggaggcccatgccggggccgggcctaatattctccccttgtccccatcatcgcttgcaatcgcgaccggtagcagcagccgcagccagcagccgtagtagtaacacgctccatctcttcttccccggtgagtccagccgcgatcgagctcgtctcgtctcatctcctctatataagcagccgcttctctcctcacttaaagcaccgagctttagcgttggcaaggagagagagagagagagagagagagagagagagagagtaattaaggctgggaggataggcagcagcagcagcgagagggaaacgagcgagcgagcttagctggtgcttgcctataggtagctaagcaaaatggggcagaggaggaggtcggggccgcggcgtcagagccagagcgtggtggtggtggtggtcgccgtgttgctggcgacggcgtcctgcgcggcggcgcagctgagccagagctactacgcgtcgacgtgccccaacgtggagacgctcgtccgcggcgccgtcacgcagaagctcaaggagaccttcaacgccgcgcctgggacgctccgcctcttcttccacgactgcttcgtcagggtacagtagtgacagaccagcccgagaacttgatgccatcgactccgtgttcttcgtgttgctgatcgtgccgtgtcgtgctcgtgcgtgtgcaggggtgcgacgcgtcggtgctgatcgcggggccggacgacgagcacagcgcgggcgcggacacgacgctgtcgccggacgcgctggacctcatcacccgcgccaaggccgccgtcgacgccgacgcccagtgcgccaacaaggtctcctgcgccgacatcctcgccctcgccgcccgcgacgtcgtctcccaggtaaacacacccacaccatcccctctctctctctcggcgtgcgcgcgcgtgccgctccgagtgcgctcgcttgagagaaaacttcgctttcgcccgtagtttttgccgttttttcaccgtgcgcgcgcgacagcgatgatgagggtgacatgccatgccgccccgcacggcgccgcagcgtgttcccggctcggcacgagtccacgctcttagctgtgcggcaattatgcgcctctcgctgtgcgcttcgttacatcgatcggtccggtgctttgctacactaaacagaagcccaaaatactccacagaagcaagccaagcagagaattcattcacctaaccgaatggaatcggaaaaattgggatttggcgctaaaattcgcgaggccgagggaggtggtcccccctagcatgtccgaattcagctgtcctattaattcagagcagggtgtccatgtaaccaccactgcatagtggtcgtcgtctcgtcagcgagagttactgcgatgtcgttgctttggtctttcttcttctccgattggatccatcaattcttttttctccagcgtgaaaaacaagtataggccgagtttagttctaaagttttttttcaaacttccaatttttccatcccattaaaacttttctacacataaacttctaactttttcatcactttatttcaatttcaatcaaacctctaattttagcgtcaactaaacacaccgttcaaatctactactactcctacgcggtatgggttggggcgcttaaatgagccgcgcgcgtacgtacggtacggcgatacataagcagagacgccggcgtccaacacgtacctaccaaaccagccacgctctcgacagtcgacaggcaggctgtggactcgtagagctacggaaatctgccaattattattaggccatgccgaaaattctgctcgcgcgcgcacacacacactcgtgagtagttgcagttgatggcaagaacggcgtgctgtagtagcagtaaaattgcttggatttcactgcaaggcaaaggcaaaagttgtatgatgtgtcatgtgtggtggtaatcacagtggtggtggttgtcgttgatgcaggcaggaggaccctactaccaggtggagctggggcggcttgacggcaaggtcgggacgcgcgccgtggtgaagcacagcctccccggcgccgccttcgacctcgaccagctcaacaagctcttcgccaccaacggcctcacccagaccgacatgatcgccctctcaggtatcaaaaacatgacaatttttacagtaccaaaattttgtattctgagtgccaaattctacactagaaaatataacaatctaaaaccggatgtgacactttatagtacaacgaatctggacagaaaacatatctagattcattatactatgaagtgtctcgttcggtactagattgctatattatgggacggagagagtatcttcttaagaattataaaatcactctaaatcgctatgaaattgggaattctcggtgttaaatgttacaatagaatagaatatatggtatcttggagtatcttgagctatatcttcttaaaaattgtaaaatcactctaaaaacgtactaacacaaattcctttttataaaatcaaattctaaaactaatttataaaattcaaatgaacttttgggtgaatctgttttcatcgtctgcttgttagcttatcagtcgtaacgaatgtggtgcaggagggcacacgataggggtgacgcactgcgacaagttcgtgcggcggctgtaccagttcaagggggcggcgccgcagtacagcccgccgatgaacctggcgttcctgcggcagatgaggcagacgtgcccgctcagctacagcccgaccaccgtcgccatgctcgacgccgtctcgcccaacaagttcgacaatggctacttccagacgctgcagcagctcaagggcctcctcgcctccgaccaggtgctcttcgccgaccgccgctcgcgcgccaccgtcaactacttcgccgccaaccagaccgccttcttcgacgccttcgtcgccgccatcaccaagctcggccgcgtcggcgtcaagacggccgccggctccgacgccgagatccggcgagtctgcaccaaggtcaactaatagcgtagagcagtatagctcacatttgggtggtagagagggtaaattggtgaattcttctctgtgtctctcttcttcttcctcttcttctccatgatgatcttcgattctcactgtccaagttcacaagtccaccacgcacagttgttgtatttgttcccgccaattcttttcttgattcttataatcataaaaagtgtcatacattaattaggatatattttcagggcccctacccatgtgatatgatagaaggtacacttacaatgatgtaaatgtttacagctggtccagttaatcaagtatatcccatacatatgccattcctttt
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| CDS seq | atggggcagaggaggaggtcggggccgcggcgtcagagccagagcgtggtggtggtggtggtcgccgtgttgctggcgacggcgtcctgcgcggcggcgcagctgagccagagctactacgcgtcgacgtgccccaacgtggagacgctcgtccgcggcgccgtcacgcagaagctcaaggagaccttcaacgccgcgcctgggacgctccgcctcttcttccacgactgcttcgtcagggcaggaggaccctactaccaggtggagctggggcggcttgacggcaaggtcgggacgcgcgccgtgcttatcagtcgtaacgaatgtggtgcaggagggcacacgataggggtgacgcactgcgacaagttcgtgcggcggctgtaccagttcaagggggcggcgccgcagtacagcccgccgatgaacctggcgttcctgcggcagatgaggcagacgtgcccgctcagctacagcccgaccaccgtcgccatgctcgacgccgtctcgcccaacaagttcgacaatggctacttccagacgctgcagcagctcaagggcctcctcgcctccgaccaggtgctcttcgccgaccgccgctcgcgcgccaccgtcaactacttcgccgccaaccagaccgccttcttcgacgccttcgtcgccgccatcaccaagctcggccgcgtcggcgtcaagacggccgccggctccgacgccgagatccggcgagtctgcaccaaggtcaactaa
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| Protein seq | MGQRRRSGPRRQSQSVVVVVVAVLLATASCAAAQLSQSYYASTCPNVETLVRGAVTQKLKETFNAAPGTLRLFFHDCFVRAGGPYYQVELGRLDGKVGTRAVLISRNECGAGGHTIGVTHCDKFVRRLYQFKGAAPQYSPPMNLAFLRQMRQTCPLSYSPTTVAMLDAVSPNKFDNGYFQTLQQLKGLLASDQVLFADRRSRATVNYFAANQTAFFDAFVAAITKLGRVGVKTAAGSDAEIRRVCTKVN |
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| Function | Peroxidase 16 [UniProtKB/Swiss-Prot:Q96518] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0027390 | OsKeNa_06g0027390.01 | Chr06 | 29879932 | 29883014 | + | NAM | ||
| CDS seq | atggggcagaggaggaggtcggggccgcggcgtcagagccagagcgtggtggtggtggtggtcgccgtgttgctggcgacggcgtcctgcgcggcggcgcagctgagccagagctactacgcgtcgacgtgccccaacgtggagacgctcgtccgcggcgccgtcacgcagaagctcaaggagaccttcaacgccgcgcctgggacgctccgcctcttcttccacgactgcttcgtcagggcaggaggaccctactaccaggtggagctggggcggcttgacggcaaggtcgggacgcgcgccgtgcttatcagtcgtaacgaatgtggtgcaggagggcacacgataggggtgacgcactgcgacaagttcgtgcggcggctgtaccagttcaagggggcggcgccgcagtacagcccgccgatgaacctggcgttcctgcggcagatgaggcagacgtgcccgctcagctacagcccgaccaccgtcgccatgctcgacgccgtctcgcccaacaagttcgacaatggctacttccagacgctgcagcagctcaagggcctcctcgcctccgaccaggtgctcttcgccgaccgccgctcgcgcgccaccgtcaactacttcgccgccaaccagaccgccttcttcgacgccttcgtcgccgccatcaccaagctcggccgcgtcggcgtcaagacggccgccggctccgacgccgagatccggcgagtctgcaccaaggtcaactaa
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| Protein seq | MGQRRRSGPRRQSQSVVVVVVAVLLATASCAAAQLSQSYYASTCPNVETLVRGAVTQKLKETFNAAPGTLRLFFHDCFVRAGGPYYQVELGRLDGKVGTRAVLISRNECGAGGHTIGVTHCDKFVRRLYQFKGAAPQYSPPMNLAFLRQMRQTCPLSYSPTTVAMLDAVSPNKFDNGYFQTLQQLKGLLASDQVLFADRRSRATVNYFAANQTAFFDAFVAAITKLGRVGVKTAAGSDAEIRRVCTKVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0027390 | OsKeNa_06g0027390.02 | Chr06 | 29882423 | 29883345 | + | IsoSeq | ||
| CDS seq | atggctacttccagacgctgcagcagctcaagggcctcctcgcctccgaccaggtgctcttcgccgaccgccgctcgcgcgccaccgtcaactacttcgccgccaaccagaccgccttcttcgacgccttcgtcgccgccatcaccaagctcggccgcgtcggcgtcaagacggccgccggctccgacgccgagatccggcgagtctgcaccaaggtcaactaatagcgtagagcagtatagctcacatttgggtggtagagagggtaaattggtgaattcttctctgtgtctctcttcttcttcctcttcttct
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| Protein seq | MATSRRCSSSRASSPPTRCSSPTAARAPPSTTSPPTRPPSSTPSSPPSPSSAASASRRPPAPTPRSGESAPRSTNSVEQYSSHLGGREGKLVNSSLCLSSSSSSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.139182 | 7.226416 | 5.462768 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0695500 | RBH | 0.0 | 0.000000 | 7.916975 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48030 | RBH | 0.0 | 0.063691 | 1.506857 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0695500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027600 | RBH | 0.0 | 91.148445 | 6.650064 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004970 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027540 | RBH | 0.0 | 45.674683 | 8.326323 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027110 | RBH | 0.0 | 1.034516 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027620 | RBH | 0.000000 | 56.964813 | 16.905128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0458200 | RBH | 7.590963 | 28.8224955 | 17.9527805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027010 | RBH | 0.102749 | 2.027466 | 2.271244 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0441100 | RBH | 18.3300455 | 21.607198 | 8.860358 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027500 | RBH | 0.0 | 0.343320 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027570 | RBH | 0.0 | 36.374889 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027160 | RBH | 0.0 | 36.687344 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027810 | RBH | 0.076602 | 3.040313 | 1.810224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027430 | RBH | 0.078346 | 9.329375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027340 | RBH | 0.0 | 7.864550 | 2.391940 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027420 | RBH | 0.319513 | 14.413557 | 10.850026 |
