Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0026110 | OGI:06079160 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:28930569-28936698 | ||||||||
| Gene Symbol | ARF17, OsARF17 | ||||||||||
| DNA seq | gcaacatgtgctaaacttcgcggtgagcctgataatttagatggcctacattcacaggattagtgtttcatggaacaaagttttggtatatatatatataccaaaagttgatagtttctacttggaatttgatatcatatagcataattattagatggtacataacttagctaagcatggatctatgttctttcagttccaggtctcaaaactaggggaagaaaaactgcagaaacataggtaacaggctagatttgattgaagggctcgttagcgcccttgcttcagaattcaactgagccgacagatgcaattcctgtgctcaggcttcttgattcctgcctgctcacatagtcatcacagctgctacctagcctctttccgggagccgagctcaaaagctcaaagggcttgcccatctgctgcacctcctgtggtgaaagtatctttatgcaggagacgctattcacgaattccctgaaattgtcgaagtttcatgttgtaagaagagcatgaaatatctcaaattatcatcagaatagtttacaaaaacttactgccaagggtcgtcgccaacgaggaggacatcatcctctcggtcgacgaatacaagctgccagcctgatctcaaagggttttccaactggccctcaaggccaaataggcgccctagttctctacgaagttcatgatagctactaaatctagtgatatcaagtgaccttccataggttcccgatttgtaaacctgtttttcacattgaaacaatttgcagattagcagtgatccaagaagtactaatcaataagttaacaagatactgagcatttcagagactgcactgcagtttattacatctaatggcaaaagttatcatgcatatgtatagcacacaacttacatatattctaaaggaaagagcaatacacagttagtgataaagtcatataatgagcaaaacagtggatagctgacaatctcataagcacaaattagagagagcgagagagagacagattcagggaagtatgacataggaaagcactcaccttcacaaaggtcgcaggtggtcgattaatcacttgatcagaattctgtgaacacggcacatatcctgattcatctaagcagtctgcactacttagtgtttgatccaaggggaaatcattctgcgacgggctcaggaaattggaggtggaataaggaattgccgtcgaatcattctcaccctggaggcttgggatgccaccttgcattagaagtgactgtgaatctatgttaacgccaaataacagatggttttgaggatcagagttcccatcttgatccaccaagcatcctcttccaggaagcggcgccaacgcagagctttgtggtatactaggtgctgttgagtccaactgctccatctgcgatgtaacctgaggacgagagggaagcaaagactccactgcaactcgcttcgatgaccatgggtcagggacaggtactgcagtcggtcttggcatgcttaggtgcgaaggtgcttccgatgaaaatggcctcaatgcattatgcatggtggatgtgttggatggtgacaatgagctcatactcgtgtctggatagctctgtggctgggagaatggtaatactgtttgcagtgtcataggtgaagactgagaaggagaggagagttgagaaaacggtgacaatgcattaggtacagactgatagttggtcatgttcttctgctgttgcatttgctgatgttgtgggacttgcatacactgcgattgctgctgctgttgttgctgtgattcttgctgttgttgctgggtttgcagctgtggcttctgctcagtaaacgactggcagcgttggagctgctgctgaaggaactcagactgagcatgcccttggattgtggtctcgttgatgttttggaggtattgctgctgctgaaactgaggctgcacttgctgcaaaatctgacttggcagaagtgtattagctctgccacctatgttctgcggctgctggaactgcaatatcgtgggagagacctgctttgttgggtcctggaaagcagtcgcagctatcgtttgatacatgtcaggttgcagaccaagtaaggaagcatcaaaccttggctgcatccaaggattcatactgagacccccgaaattcaatgattggaaaccaggatttgcgctgtctcggagccacatgagagaagaagtcaagtcgtcatccttaccacctacaggtagtcatcattgaaagatgattcacagtttaaaagagtaatacacatcaattatgcagctatctgaaaatgtgaagtaaacatcaactgcccctcctaccatgtaatgaaggcaagcctgttggccatggacgcttcagtctgagtggaaaaggagatgggtacattgggaaagttgtcaagggctcaatctcccaaagcgacacccttggctgcctctctccggcagttgattcatcccagccaacctgcattatccaagaaaaacactatcaacatgctgaaccataatgttggtaccaggacgatgagaccaacacgcaatccaaagaggaaatttcatcctgcctaacagaaaacttgtatggtcaaatgtgtaaagaacaggattgaaggcaataagaaaaaatgctagcctggaaatgtacctttacagaacgccaatgtgagtttggccaacgagcagcatcaagatcactaattcctgttatcgtgcccatgtatctgcaaataagaatatttgatcctgtcaggcagttatgtacttttgagtctatgaaaatttaccaggcaaacacaattcatcatacctccgtacacttgactcttctgtctcaaaaagcatcctgaaacgcatgcccacagatatacgggtatgatatacagccttaacatatttagaaagtgggataacaaactctgaagggcttgctctgcattaaacggaagggaatagttaggaggaattctgagtaaataaatgttatacaaaaatattaccttgggttataaaaaattgtaaaccggctatttgttgaagcagcatgagcagccgcagcaagaagaccaatatgcatgctatcactagataggactgaagatggcataacagtttgtgggcggttagctcgacgaattcccagaagaagctggttgttgtcattcctgacaatgcaaggaaatacatatataaaaccacaaacaatctctccactgaaacgtaaatggctaagcacaggacagtgtcaagtgatcattctgcatctttgataaataaatgtaccagataaataggacagaatccccggcgacaagtctctttgcacttacaaagacgctccagcctgtagttagaaggtgtcgctttggctgacctgcaccacaaattagaatatatgagcaagctttgttctcaccttaagctactcgtttttgttaagcaaataatccagccccaatgaaaaaaaatcacctccatggctccatgtttgatccattttatcatgaaaaacattaatttaattttccttatttccattacatatttaaggatttttgttcctttcatttacaaagataaattgacctcaatggctaccagagtttaatggatagtatttatcacaactgtaaaaggtaatacatagtttattatcagaggacttagaaatgacaataggaaaaaactgctcaccacgaaagatatgacgaaacttccactcattgccatgaagatcttttgcaattaactcctgtgctggaggctgctgagtaaaatcctacaaaattaaagacaattagaacagatgatgaaccaattaaaagaataactggaaaacgggagaaaaacagcacaaaccagcggagggaacactttctcagctgctcgacggggaacagagaatccgccatgcgtacttgtgtcacttgccgttaatgttttgcaaaaataattcgttggctgtttgttggcagaacctaattcagctggtagatatgggtccttgagctcttgctgaaaagaaaagaaagcccaaaaattattctcttggagactacttagaaatttgcacatagcacaagtggttataaaaattatgaattaccgggctaagtggttgtagcgtcatctgagcgtaaacctcatctgtttctgcatctgcctgaaggaaataagcagacgatgcaacacaaggtcagcagtgagattacttggctctggaaacgaaaaaaagatgttctctaaacttacatgcatcgtcacattgtgaagttggcaaataagttgtggaggcaagttaggataattggggatctgagactccatttctttatttgttgatgcagctacctgcggcagcaattgacccgatgaatttacacagaaatggaagcaactgatttctgatagaatcaaatcggatttcaatttggcagtgaaaccatcacatgatactctcaagcattacttgtagtggagtgaaaaaattctaacctgttcgctgtgaccctgtgggaaataaaccactcggctacccactgcaggcaacgaaacaaggggaccggcacacgcatgccagagctccgaattcaggcatttttgttcttctacagctgtaatggcaaaagcagttggtcagaagaccaagttttaacaaacaatgctagggagcataaagtgtaacatttctgatttcatatgctcagcattgttagaggaggtggatatggtactaaatgaacttctcagtggcctaacattgggcaagggccttttttctctttgcatattcctagaaaatagactattatggaggtgataagcacaaaaaaaagtctcaggaaagaacagtccaaaggaatcaaggcataagtaagaattggatcgaaaatagacagcatatacatgattacagaactgaaatttcatgggaacagaaggccaaaatccaaagggggagggaaagaaattcacatgccaattagtacatcctttccaaaataaatcatcagaataaatccaaataacagagagagctcaaatttgccgcattctgtagcttcctgatcacaaagaacacagtccaaaatacgagctctgaaactttcaagcaaggcatacgaacaaacagcaaccaaatacatactagtcctatgaacttcataatacactctgaataaatgaacaaagatggcattaatgagcaagccacggagcacagaaaactctgaattttaaaaaaaaacaagaagtagtaccttccggcgacgccgcctgagccgggaggacgctgccggacgacgacgaaagcctcatttttcttctctctctctctctctctccaaaagaccaatcacaagaccgatctgaaatgcaatataagagcgtgcacgaagctggggaaggaaggagagaacgaaggaaagattcctcctttttaggccaaatcacagcgccttcccaaaaaccatcgctttctcagtttcgccaactcaccaacacttcttctttcgctgtttcgcaattacgcttcccccggaagaagaagaaaaagaaaaatcaaatctaccgagcaagcgtcgtaagcttctccatcgacgaggtgatgagaattttttttccccacttccaagaccagcaagaaccagtggaaaaaaaggctgtgatcttcgggggggggggggggaggaaatgctgctgcgggaggcgacaccgcttgatccgaggagtcgcgtggtcagatctcgcggccgcgaggtctgcacggttagctctcagctctgggctCcccggccgccgctctccggcagatccgaccgccgccgccgccgccgcagccggagagggaggctaggagcatgcttcctgcctagctagctgagatgcttcccttctccctccttcttctgttgcaacttcttctgagctcaagagttgcaactgagatttgcttcttggtttggtttggtttggtttgctttcttgcttccttcctcagttcctcttgcagcttcctgctacttctaacttgttcttggggttttaaccccacgagtgctgctctctctctctctctctctctctctctctctctctcagt
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| CDS seq | atggagtctcagatccccaattatcctaacttgcctccacaacttatttgccaacttcacaatgtgacgatgcatgcagatgcagaaacagatgaggtttacgctcagatgacgctacaaccacttagcccgcaagagctcaaggacccatatctaccagctgaattaggttctgccaacaaacagccaacgaattatttttgcaaaacattaacggcaagtgacacaagtacgcatggcggattctctgttccccgtcgagcagctgagaaagtgttccctccgctggattttactcagcagcctccagcacaggagttaattgcaaaagatcttcatggcaatgagtggaagtttcgtcatatctttcgtggtcagccaaagcgacaccttctaactacaggctggagcgtctttgtaagtgcaaagagacttgtcgccggggattctgtcctatttatctggaatgacaacaaccagcttcttctgggaattcgtcgagctaaccgcccacaaactgttatgccatcttcagtcctatctagtgatagcatgcatattggtcttcttgctgcggctgctcatgctgcttcaacaaatagccggtttacaattttttataacccaagagcaagcccttcagagtttgttatcccactttctaaatatgttaaggctgtatatcatacccgtatatctgtgggcatgcgtttcaggatgctttttgagacagaagagtcaagtgtacggagatacatgggcacgataacaggaattagtgatcttgatgctgctcgttggccaaactcacattggcgttctgtaaaggttggctgggatgaatcaactgccggagagaggcagccaagggtgtcgctttgggagattgagcccttgacaactttcccaatgtacccatctccttttccactcagactgaagcgtccatggccaacaggcttgccttcattacatggtggtaaggatgacgacttgacttcttctctcatgtggctccgagacagcgcaaatcctggtttccaatcattgaatttcgggggtctcagtatgaatccttggatgcagccaaggtttgatgcttccttacttggtctgcaacctgacatgtatcaaacgatagctgcgactgctttccaggacccaacaaagcaggtctctcccacgatattgcagttccagcagccgcagaacataggtggcagagctaatacacttctgccaatattaccattctcccagccacagagctatccagacacgagtatgagctcattgtcaccatccaacacatccaccatgcataatgcattgaggccattttcatcggaagcaccttcgcacctaagcatgccaagaccgactgcagtacctgtccctgacccatggtcatcgaagcgagttgcagtggagtctttgcttccctctcgtcctcaggttacatcgcagatggagcagttggactcaacagcacctagtataccacaaagctctgcgttggcgccgcttcctggaagaggatgcttggtggatcaagatgggaactctgatcctcaaaaccatctgttatttggcgttaacatagattcacagtcacttctaatgcaaggtggcatcccaagcctccagggtgagaatgattcgacggcaattccttattccacctccaatttcctgagcccgtcgcagaatgatttccccttggatcaaacactaagtagtgcagactgcttagatgaatcaggatatgtgccgtgttcacagaattctgatcaagtgattaatcgaccacctgcgacctttgtgaaggtttacaaatcgggaacctatggaaggtcacttgatatcactagatttagtagctatcatgaacttcgtagagaactagggcgcctatttggccttgagggccagttggaaaaccctttgagatcaggctggcagcttgtattcgtcgaccgagaggatgatgtcctcctcgttggcgacgacccttggcaggaattcgtgaatagcgtctcctgcataaagatactttcaccacaggaggtgcagcagatgggcaagccctttgagcttttgagctcggctcccggaaagaggctaggtagcagctgtgatgactatgtgagcaggcaggaatcaagaagcctgagcacaggaattgcatctgtcggctcagttgaattctga
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| Protein seq | MESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLHGGKDDDLTSSLMWLRDSANPGFQSLNFGGLSMNPWMQPRFDASLLGLQPDMYQTIAATAFQDPTKQVSPTILQFQQPQNIGGRANTLLPILPFSQPQSYPDTSMSSLSPSNTSTMHNALRPFSSEAPSHLSMPRPTAVPVPDPWSSKRVAVESLLPSRPQVTSQMEQLDSTAPSIPQSSALAPLPGRGCLVDQDGNSDPQNHLLFGVNIDSQSLLMQGGIPSLQGENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPFELLSSAPGKRLGSSCDDYVSRQESRSLSTGIASVGSVEF |
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| Function | Auxin response factor 17 [UniProtKB/Swiss-Prot:Q653U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0026110 | OsKeNa_06g0026110.01 | Chr06 | 28930569 | 28935494 | - | NAM | ||
| CDS seq | atggagtctcagatccccaattatcctaacttgcctccacaacttatttgccaacttcacaatgtgacgatgcatgcagatgcagaaacagatgaggtttacgctcagatgacgctacaaccacttagcccgcaagagctcaaggacccatatctaccagctgaattaggttctgccaacaaacagccaacgaattatttttgcaaaacattaacggcaagtgacacaagtacgcatggcggattctctgttccccgtcgagcagctgagaaagtgttccctccgctggattttactcagcagcctccagcacaggagttaattgcaaaagatcttcatggcaatgagtggaagtttcgtcatatctttcgtggtcagccaaagcgacaccttctaactacaggctggagcgtctttgtaagtgcaaagagacttgtcgccggggattctgtcctatttatctggaatgacaacaaccagcttcttctgggaattcgtcgagctaaccgcccacaaactgttatgccatcttcagtcctatctagtgatagcatgcatattggtcttcttgctgcggctgctcatgctgcttcaacaaatagccggtttacaattttttataacccaagagcaagcccttcagagtttgttatcccactttctaaatatgttaaggctgtatatcatacccgtatatctgtgggcatgcgtttcaggatgctttttgagacagaagagtcaagtgtacggagatacatgggcacgataacaggaattagtgatcttgatgctgctcgttggccaaactcacattggcgttctgtaaaggttggctgggatgaatcaactgccggagagaggcagccaagggtgtcgctttgggagattgagcccttgacaactttcccaatgtacccatctccttttccactcagactgaagcgtccatggccaacaggcttgccttcattacatggtggtaaggatgacgacttgacttcttctctcatgtggctccgagacagcgcaaatcctggtttccaatcattgaatttcgggggtctcagtatgaatccttggatgcagccaaggtttgatgcttccttacttggtctgcaacctgacatgtatcaaacgatagctgcgactgctttccaggacccaacaaagcaggtctctcccacgatattgcagttccagcagccgcagaacataggtggcagagctaatacacttctgccaatattaccattctcccagccacagagctatccagacacgagtatgagctcattgtcaccatccaacacatccaccatgcataatgcattgaggccattttcatcggaagcaccttcgcacctaagcatgccaagaccgactgcagtacctgtccctgacccatggtcatcgaagcgagttgcagtggagtctttgcttccctctcgtcctcaggttacatcgcagatggagcagttggactcaacagcacctagtataccacaaagctctgcgttggcgccgcttcctggaagaggatgcttggtggatcaagatgggaactctgatcctcaaaaccatctgttatttggcgttaacatagattcacagtcacttctaatgcaaggtggcatcccaagcctccagggtgagaatgattcgacggcaattccttattccacctccaatttcctgagcccgtcgcagaatgatttccccttggatcaaacactaagtagtgcagactgcttagatgaatcaggatatgtgccgtgttcacagaattctgatcaagtgattaatcgaccacctgcgacctttgtgaaggtttacaaatcgggaacctatggaaggtcacttgatatcactagatttagtagctatcatgaacttcgtagagaactagggcgcctatttggccttgagggccagttggaaaaccctttgagatcaggctggcagcttgtattcgtcgaccgagaggatgatgtcctcctcgttggcgacgacccttggcaggaattcgtgaatagcgtctcctgcataaagatactttcaccacaggaggtgcagcagatgggcaagccctttgagcttttgagctcggctcccggaaagaggctaggtagcagctgtgatgactatgtgagcaggcaggaatcaagaagcctgagcacaggaattgcatctgtcggctcagttgaattctga
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| Protein seq | MESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLHGGKDDDLTSSLMWLRDSANPGFQSLNFGGLSMNPWMQPRFDASLLGLQPDMYQTIAATAFQDPTKQVSPTILQFQQPQNIGGRANTLLPILPFSQPQSYPDTSMSSLSPSNTSTMHNALRPFSSEAPSHLSMPRPTAVPVPDPWSSKRVAVESLLPSRPQVTSQMEQLDSTAPSIPQSSALAPLPGRGCLVDQDGNSDPQNHLLFGVNIDSQSLLMQGGIPSLQGENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPFELLSSAPGKRLGSSCDDYVSRQESRSLSTGIASVGSVEF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0026110 | OsKeNa_06g0026110.02 | Chr06 | 28930637 | 28936698 | - | IsoSeq | ||
| CDS seq | actgagagagagagagagagagagagagagagagagagagcagcactcgtggggttaaaaccccaagaacaagttagaagtagcaggaagctgcaagaggaactgaggaaggaagcaagaaagcaaaccaaaccaaaccaaaccaagaagcaaatctcagttgcaactcttgagctcagaagaagttgcaacagaagaaggagggagaagggaagcatctcagct
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| Protein seq | TERERERERERERAALVGLKPQEQVRSSRKLQEELRKEARKQTKPNQTKKQISVATLELRRSCNRRRREKGSISA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr06 | 28931619 | 28932811 | - | OsKeNa_06g0026110.02 | OsKeNa_06g0026110.02,OsKeNa_06g0026110.01 | All |
| AF | Chr06 | 28935211 | 28936698 | - | OsKeNa_06g0026110.01 | OsKeNa_06g0026110.02,OsKeNa_06g0026110.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.233523 | 3.139780 | 10.246999 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0677800 | RBH | 0.452855 | 0.933654 | 12.757449 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46410 | RBH | 0.305099 | 0.625612 | 3.309394 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0677800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026280 | RBH | 0.355181 | 9.279780 | 25.906549 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005120 | RBH | 0.733462 | 2.066115 | 7.895317 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026290 | RBH | 0.380886 | 11.265167 | 36.807915 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025920 | RBH | 0.035075 | 0.729683 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026370 | RBH | 1.723362 | 29.270981 | 46.998676 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0441400 | RBH | 10.465644 | 22.431886 | 32.2959535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025780 | RBH | 0.181785 | 1.374329 | 4.805937 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0423600 | RBH | 13.2058555 | 19.534337 | 66.117308 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026220 | RBH | 0.0 | 0.359735 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026320 | RBH | 0.116860 | 13.358510 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025940 | RBH | 3.455920 | 44.771965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026590 | RBH | 0.427197 | 1.409172 | 3.244582 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026170 | RBH | 0.023371 | 6.035970 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026080 | RBH | 0.086741 | 7.282564 | 10.363688 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026130 | RBH | 0.368129 | 12.406624 | 22.440100 |
