Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0020160 | OGI:06062050 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:22788407-22791781 | ||||||||
| Gene Symbol | SDRLK-72 | ||||||||||
| DNA seq | atggttgcaagctctgcctctctgctcctcttcactctgatccacccacttttgtgcatctcagctcaagatttcctcaagccaggctcctccctgtctgtacaggatgtgctccattcaccggatggcactttcacctgtggcttctacaaaatctcccccaatgcctccaccttctctatctggttctccaacttgaccgaaaaccccgtcgtctggagcgcaaatcctctccaccctgtgtacacctggggatccaaagttgagttgaaattcgatggtggcatgtttttgaaagattatgctggccagattgtgtgggctaacaacgttagctcttcagatacccagtatgctcaagctcagctcttggacaccgggaacctcgttgtgaagggcgaaagtggtaacactctgtggcaaagctttgattctcctactgatacattgttacccactcagagcatcactgctgctacaaagcttgtgtctacaaataggttacttgttcctggccattacagtttctgtttcgatgatcagtacttactttcactgtttgatgatgagaagaacatatcttttatctactggccaaaccctagtatgactatttgggcaaagctaagaagtccattcaacagcaccacaaatggggttcttgacagctggggacatttccttggaagtgataatgcaacattcatagctgctgattggggtcctggcacagtgaggagactaacactggattatgatggcaatctcaggctgtacagtcttgataaggtagacagaacatggtcagtgacatggatggcatttcctcagctctgcaaagtacgcggtttgtgcggtcagaatggaatatgtgtgtatacacctgttcctgcctgtgcttgtgcccctggttacgagatcatcgacccaagtgaccggagcaaaggttgcagcccaaaggtcaacctcagttgtgatggacagaaggtgaaatttgttgcactccgcaatactgatttcttggggtatgatctgagtgtttatcgttttgttcctcttggattctgcaagaacatatgcttgaaagactgcaggtgtaagggtttcgcctactgggaaggaactagtgattgctatccaaagtctgttcttcttggtggtgtaacactaagtaactttggcagcactggtaccatgtatctcaagcttcctgagggagtaaatgtgtcaaggtcctcatttccccattcacagcctcttggtcctaaatatggccctaactgtaatacaacaaacaacatttccatagcagattttttggatacacttaatagtgggcagagcatatcaaagtttttgtatttctacgggttcttatcagcgatatttctggcggaggtattatttgttttattaggatggtttattttgaggagggaggccaaacaactcagaggagtatggccagctgaggccggatatgaaatgatagctaaccattttcgcaggtacacctacagagagttggtgttggccactagaaaatttaaggatgagcttggaaggggagcatcaggcgtcgtatacaagggagtcttgaaagacaatagggtagtggccgtgaaaaagttggtagacgtaaacgaaggtgaagaagaattccagcatgaattgagtgtgactagcaggatttaccatacaaatctagtgagggtttggggattctgttctgacggtccacacaggatattggtttcagaatttgtggagaatggttcgttggacaaaatcttgtttggcagtgggggctcacagaacttacttggatggacacaaagattcaatattgctcttggggtggcaaaaggattggcatatcttcatcatgaatgttccgagtgggtcatccactgcgacatgaaacctgaaaatatattgttgggcgagaatatggagccgaagatcgccgactttggccttgcaaagctcctgaacagagatggatctaacatagacatatcacggatccgaggaacaagaggttatttggcacctgaatgggtttacagtctgccaataacagcgaaggtagatgtgtacagcttcggagtcgtgctcctcgaattgctgaagggagctcgtgtttcagaattggaaaagaatgatgatgaggacgtgaaaatggccctgggaagggtaatcaggctatgctcagagcaacttaagtcagatggcgacgatcagttttggattgccgacttcattgacacccgattgaatggccaattcaacagcgcacaagcaagaatgatgatggaattggctgtttcatgccttgaagaagatagagtcagaagacctaccatggaatgtgtggtgcagaaacttgtatcagttgatgaagtcagtagcacaccaacaggaggaagtgaggaaccacattcaaccagaacttcatcactaataagttattaaagtctatgcaagaaaagggtccagatatagaagaagtaatatttgtgcaatagctaactactactgtaactagtaatatttacacaataatcatgctatatctgttgtaaaaactccagcaataactggaaggctggaaagtgtgccccagaacaagggaatgtcggtgacatgttcatagacatgcctctttcagtgaaaagtgtaatgctgatattgagagataattttataattacttgttttacatgtattaaattttcacctatttcacttatttctacgggcagatttaagatcagcttctgtgctacataactaatagacgcaacaccaccacaaattgaatgtccaaagcagttctgggctcaatcatgtaataggacagaaaggagaaattgtccatcccaaacacatggatgaaccaaaccaacatttaaacaagataataagtactacaatccctcgatatcttggaaagaaaatgcccaatactacttgtctacgtctacagcaaccttgactgacgcagcaactaatatacagtacgtccacacggtggctgtgtgcaataaaatgaacaataatagatcatgtactactagtagcatttcccagatcggacgattatcacccaaaacacttggcaatatagattgttcagttggaagaacagaagcggtagcgcgaagtagccacttttccccatcctctactacgggacttacctgtcgagtggtggacgtggaggcgggcggagcatcggttttgggcggtgaagctgcggatagggtggtctccggacgccgcccttgcgccgcgcgcggccgcgaccggaccacaagggcgtgcgagctgctgcatctgctgaaggtgggccgccgccggccgcggaacaaa
More
|
||||||||||
| CDS seq | atggttgcaagctctgcctctctgctcctcttcactctgatccacccacttttgtgcatctcagctcaagatttcctcaagccaggctcctccctgtctgtacaggatgtgctccattcaccggatggcactttcacctgtggcttctacaaaatctcccccaatgcctccaccttctctatctggttctccaacttgaccgaaaaccccgtcgtctggagcgcaaatcctctccaccctgtgtacacctggggatccaaagttgagttgaaattcgatggtggcatgtttttgaaagattatgctggccagattgtgtgggctaacaacgttagctcttcagatacccagtatgctcaagctcagctcttggacaccgggaacctcgttgtgaagggcgaaagtggtaacactctgtggcaaagctttgattctcctactgatacattgttacccactcagagcatcactgctgctacaaagcttgtgtctacaaataggttacttgttcctggccattacagtttctgtttcgatgatcagtacttactttcactgtttgatgatgagaagaacatatcttttatctactggccaaaccctagtatgactatttgggcaaagctaagaagtccattcaacagcaccacaaatggggttcttgacagctggggacatttccttggaagtgataatgcaacattcatagctgctgattggggtcctggcacagtgaggagactaacactggattatgatggcaatctcaggctgtacagtcttgataaggtagacagaacatggtcagtgacatggatggcatttcctcagctctgcaaagtacgcggtttgtgcggtcagaatggaatatgtgtgtatacacctgttcctgcctgtgcttgtgcccctggttacgagatcatcgacccaagtgaccggagcaaaggttgcagcccaaaggtcaacctcagttgtgatggacagaaggtgaaatttgttgcactccgcaatactgatttcttggggtatgatctgagtgtttatcgttttgttcctcttggattctgcaagaacatatgcttgaaagactgcaggtgtaagggtttcgcctactgggaaggaactagtgattgctatccaaagtctgttcttcttggtggtgtaacactaagtaactttggcagcactggtaccatgtatctcaagcttcctgagggagtaaatgtgtcaaggtcctcatttccccattcacagcctcttggtcctaaatatggccctaactgtaatacaacaaacaacatttccatagcagattttttggatacacttaatagtgggcagagcatatcaaagtttttgtatttctacgggttcttatcagcgatatttctggcggaggtattatttgttttattaggatggtttattttgaggagggaggccaaacaactcagaggagtatggccagctgaggccggatatgaaatgatagctaaccattttcgcaggtacacctacagagagttggtgttggccactagaaaatttaaggatgagcttggaaggggagcatcaggcgtcgtatacaagggagtcttgaaagacaatagggtagtggccgtgaaaaagttggtagacgtaaacgaaggtgaagaagaattccagcatgaattgagtgtgactagcaggatttaccatacaaatctagtgagggtttggggattctgttctgacggtccacacaggatattggtttcagaatttgtggagaatggttcgttggacaaaatcttgtttggcagtgggggctcacagaacttacttggatggacacaaagattcaatattgctcttggggtggcaaaaggattggcatatcttcatcatgaatgttccgagtgggtcatccactgcgacatgaaacctgaaaatatattgttgggcgagaatatggagccgaagatcgccgactttggccttgcaaagctcctgaacagagatggatctaacatagacatatcacggatccgaggaacaagaggttatttggcacctgaatgggtttacagtctgccaataacagcgaaggtagatgtgtacagcttcggagtcgtgctcctcgaattgctgaagggagctcgtgtttcagaattggaaaagaatgatgatgaggacgtgaaaatggccctgggaagggtaatcaggctatgctcagagcaacttaagtcagatggcgacgatcagttttggattgccgacttcattgacacccgattgaatggccaattcaacagcgcacaagcaagaatgatgatggaattggctgtttcatgccttgaagaagatagagtcagaagacctaccatggaatgtgtggtgcagaaacttgtatcagttgatgaagtcagtagcacaccaacaggaggaagtgaggaaccacattcaaccagaacttcatcactaataagttattaa
More
|
||||||||||
| Protein seq | MVASSASLLLFTLIHPLLCISAQDFLKPGSSLSVQDVLHSPDGTFTCGFYKISPNASTFSIWFSNLTENPVVWSANPLHPVYTWGSKVELKFDGGMFLKDYAGQIVWANNVSSSDTQYAQAQLLDTGNLVVKGESGNTLWQSFDSPTDTLLPTQSITAATKLVSTNRLLVPGHYSFCFDDQYLLSLFDDEKNISFIYWPNPSMTIWAKLRSPFNSTTNGVLDSWGHFLGSDNATFIAADWGPGTVRRLTLDYDGNLRLYSLDKVDRTWSVTWMAFPQLCKVRGLCGQNGICVYTPVPACACAPGYEIIDPSDRSKGCSPKVNLSCDGQKVKFVALRNTDFLGYDLSVYRFVPLGFCKNICLKDCRCKGFAYWEGTSDCYPKSVLLGGVTLSNFGSTGTMYLKLPEGVNVSRSSFPHSQPLGPKYGPNCNTTNNISIADFLDTLNSGQSISKFLYFYGFLSAIFLAEVLFVLLGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYRELVLATRKFKDELGRGASGVVYKGVLKDNRVVAVKKLVDVNEGEEEFQHELSVTSRIYHTNLVRVWGFCSDGPHRILVSEFVENGSLDKILFGSGGSQNLLGWTQRFNIALGVAKGLAYLHHECSEWVIHCDMKPENILLGENMEPKIADFGLAKLLNRDGSNIDISRIRGTRGYLAPEWVYSLPITAKVDVYSFGVVLLELLKGARVSELEKNDDEDVKMALGRVIRLCSEQLKSDGDDQFWIADFIDTRLNGQFNSAQARMMMELAVSCLEEDRVRRPTMECVVQKLVSVDEVSSTPTGGSEEPHSTRTSSLISY |
||||||||||
| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0020160 | OsKeNa_06g0020160.01 | Chr06 | 22788407 | 22791781 | + | NAM | ||
| CDS seq | atggttgcaagctctgcctctctgctcctcttcactctgatccacccacttttgtgcatctcagctcaagatttcctcaagccaggctcctccctgtctgtacaggatgtgctccattcaccggatggcactttcacctgtggcttctacaaaatctcccccaatgcctccaccttctctatctggttctccaacttgaccgaaaaccccgtcgtctggagcgcaaatcctctccaccctgtgtacacctggggatccaaagttgagttgaaattcgatggtggcatgtttttgaaagattatgctggccagattgtgtgggctaacaacgttagctcttcagatacccagtatgctcaagctcagctcttggacaccgggaacctcgttgtgaagggcgaaagtggtaacactctgtggcaaagctttgattctcctactgatacattgttacccactcagagcatcactgctgctacaaagcttgtgtctacaaataggttacttgttcctggccattacagtttctgtttcgatgatcagtacttactttcactgtttgatgatgagaagaacatatcttttatctactggccaaaccctagtatgactatttgggcaaagctaagaagtccattcaacagcaccacaaatggggttcttgacagctggggacatttccttggaagtgataatgcaacattcatagctgctgattggggtcctggcacagtgaggagactaacactggattatgatggcaatctcaggctgtacagtcttgataaggtagacagaacatggtcagtgacatggatggcatttcctcagctctgcaaagtacgcggtttgtgcggtcagaatggaatatgtgtgtatacacctgttcctgcctgtgcttgtgcccctggttacgagatcatcgacccaagtgaccggagcaaaggttgcagcccaaaggtcaacctcagttgtgatggacagaaggtgaaatttgttgcactccgcaatactgatttcttggggtatgatctgagtgtttatcgttttgttcctcttggattctgcaagaacatatgcttgaaagactgcaggtgtaagggtttcgcctactgggaaggaactagtgattgctatccaaagtctgttcttcttggtggtgtaacactaagtaactttggcagcactggtaccatgtatctcaagcttcctgagggagtaaatgtgtcaaggtcctcatttccccattcacagcctcttggtcctaaatatggccctaactgtaatacaacaaacaacatttccatagcagattttttggatacacttaatagtgggcagagcatatcaaagtttttgtatttctacgggttcttatcagcgatatttctggcggaggtattatttgttttattaggatggtttattttgaggagggaggccaaacaactcagaggagtatggccagctgaggccggatatgaaatgatagctaaccattttcgcaggtacacctacagagagttggtgttggccactagaaaatttaaggatgagcttggaaggggagcatcaggcgtcgtatacaagggagtcttgaaagacaatagggtagtggccgtgaaaaagttggtagacgtaaacgaaggtgaagaagaattccagcatgaattgagtgtgactagcaggatttaccatacaaatctagtgagggtttggggattctgttctgacggtccacacaggatattggtttcagaatttgtggagaatggttcgttggacaaaatcttgtttggcagtgggggctcacagaacttacttggatggacacaaagattcaatattgctcttggggtggcaaaaggattggcatatcttcatcatgaatgttccgagtgggtcatccactgcgacatgaaacctgaaaatatattgttgggcgagaatatggagccgaagatcgccgactttggccttgcaaagctcctgaacagagatggatctaacatagacatatcacggatccgaggaacaagaggttatttggcacctgaatgggtttacagtctgccaataacagcgaaggtagatgtgtacagcttcggagtcgtgctcctcgaattgctgaagggagctcgtgtttcagaattggaaaagaatgatgatgaggacgtgaaaatggccctgggaagggtaatcaggctatgctcagagcaacttaagtcagatggcgacgatcagttttggattgccgacttcattgacacccgattgaatggccaattcaacagcgcacaagcaagaatgatgatggaattggctgtttcatgccttgaagaagatagagtcagaagacctaccatggaatgtgtggtgcagaaacttgtatcagttgatgaagtcagtagcacaccaacaggaggaagtgaggaaccacattcaaccagaacttcatcactaataagttattaa
More
|
|||||||
| Protein seq | MVASSASLLLFTLIHPLLCISAQDFLKPGSSLSVQDVLHSPDGTFTCGFYKISPNASTFSIWFSNLTENPVVWSANPLHPVYTWGSKVELKFDGGMFLKDYAGQIVWANNVSSSDTQYAQAQLLDTGNLVVKGESGNTLWQSFDSPTDTLLPTQSITAATKLVSTNRLLVPGHYSFCFDDQYLLSLFDDEKNISFIYWPNPSMTIWAKLRSPFNSTTNGVLDSWGHFLGSDNATFIAADWGPGTVRRLTLDYDGNLRLYSLDKVDRTWSVTWMAFPQLCKVRGLCGQNGICVYTPVPACACAPGYEIIDPSDRSKGCSPKVNLSCDGQKVKFVALRNTDFLGYDLSVYRFVPLGFCKNICLKDCRCKGFAYWEGTSDCYPKSVLLGGVTLSNFGSTGTMYLKLPEGVNVSRSSFPHSQPLGPKYGPNCNTTNNISIADFLDTLNSGQSISKFLYFYGFLSAIFLAEVLFVLLGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYRELVLATRKFKDELGRGASGVVYKGVLKDNRVVAVKKLVDVNEGEEEFQHELSVTSRIYHTNLVRVWGFCSDGPHRILVSEFVENGSLDKILFGSGGSQNLLGWTQRFNIALGVAKGLAYLHHECSEWVIHCDMKPENILLGENMEPKIADFGLAKLLNRDGSNIDISRIRGTRGYLAPEWVYSLPITAKVDVYSFGVVLLELLKGARVSELEKNDDEDVKMALGRVIRLCSEQLKSDGDDQFWIADFIDTRLNGQFNSAQARMMMELAVSCLEEDRVRRPTMECVVQKLVSVDEVSSTPTGGSEEPHSTRTSSLISY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037938 | 1.233405 | 0.471886 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0574550 | RBH | 0.000000 | 0.248388 | 0.295991 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37670 | RBH | 0.193612 | 0.098738 | 0.151352 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0574550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020320 | RBH | 0.0 | 3.703878 | 0.767889 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020190 | SBH | 0.053063 | 0.888399 | 0.790685 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020260 | RBH | 0.0 | 4.727669 | 1.856656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019970 | RBH | 0.054288 | 0.214418 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020440 | RBH | 0.620531 | 2.040105 | 1.672364 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0351500 | RBH | 0.1610015 | 3.6660235 | 0.5939365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019830 | RBH | 0.0 | 0.128136 | 0.255695 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0325500 | RBH | 0.2748045 | 2.438132 | 1.70245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020350 | RBH | 0.0 | 6.232132 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019970 | RBH | 0.0 | 2.508972 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020660 | RBH | 0.037237 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020110 | RBH | 0.000000 | 2.797975 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020030 | RBH | 0.0 | 0.790837 | 0.209992 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020230 | RBH | 0.427910 | 7.970096 | 0.085059 |
