Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0017330 | OGI:06049890 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:19076541-19079680 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttcgtccgttggatgttgatcccacggttaggatagagcgaggtgatcggtgcgcagtaaaataaaaaaagaagcgcaaaaaaatccgcgcaaaaagaaaaccacgccgaaaagaaaatccaccccaaaaaggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtttgtacgggctagggtttGgggggcgcccgtccagatctgggggattgacttgggtgttggggttggtgTtggttgcaggtggtggtgtgtgccgggtagaggaggaggaggaagcgagggcgtcggacttgtgcgtgcgcaggtccaggggcaggacgacattcgacgcggtcgccgacgaggtctcctagttcactctgcttgttgttgctgaatgggtagtgattatcaatactgatggactgcatttctcttgcagtttttccccttttgccTttgatttcttcggccctttcctttcaagttttgatacaaagaattcagaaactcatactatatgatgggtagtttcctctgtttagtcctgtatcttggaactcatactttatgatcaaagaattcagaaaaggatcatgtaactatccagtctagtatggactgtagttgtttctaactgctttccatagaaacttttgcaccctttgtggtataaagaattagaacaaatcataagattcttaagctgctaaggttaagtatcatgaccttcactagtaaatcataagattcctcctagttcactctgcttgatgttcaacagacctcatgatgcatgtgccccggaaatatattgctctcatatttgtaggattagatattcagtaaagttccagagtttcgctctgttttttatagtacaatgggtgcttttttgtctaaactgtgtgctggtaaatataaacgataaaaccatccagaactgagaaaacctagcagccgctggtgttgtgtttaattacatattgcagatgtatacacctctgcatttctaagtttgtattcctgcagttataaactcataatccgcttatactctgcaaacacatatatgaggtaagttcagtctggctgcagttaattaagattaaggttgaaaatacggtgaactcattttggtattgatctgtgaccatgagttcatgttgaatcctatatatgcttaatttagcacatctgttgttgtctgcatagtggtcttcatggcatatgctaattctggaagtgccaccgataaggtgtggccttgctctgttcatttgtcgaaattaagaactttgattctaaatgcatgctatttgttagaggctgtgtgtggctacaagtttctatatgtcctttgggcctaacagaggcattaatatctgttttgctttttggatcacttctcattccctgaattttgtcttctgacttttcagaagcctgagttctgaaaagggcatactagaaaacatctgttgctgctctttctgctagatggagtacataattttttttatgttatgttagcttgaatattgacctggcctcaagttgctatgttagctctgaattttcctagcttaacactgctaagtcacaagtgcggcattacaaacatttcagtaactgatatttataggattagatgttcaattaagtttcaggattttgctttgttttaatgaagcatgatctgattttttttaccaattcatataattagatggctgagatttgttgtttcatgtaatgcatgcaaaatgtttgacttagaatttttcttgtagacaactcagggacagatggagtagtagttggaggtccaatattatagcctaggacacgaacaaatgcagaaaatggaggtgttgatgctaatgatcctcgaaatatgcccttagctggtgaaggtatttcattcgacatttgcatgtatcgttaataagattaaggtatatgaatatatcaagttcttatcatctcttttcatatgtaagcagaaaatgttccaggtgttaataatgtacagctacaaaagaaggtacacaagaagacagcaaagactaaccagcgagcaggtacttaatttgtacatgatgcaacatgtttttgtgtatatattgcctctctgacttaatttgccatgccttgcatctatatccatcatcatgatatatacccaatagttagtgtgcactttataagctgaacaattggtattgttttgttagaaaggataaccaatgcttgtagcctaaaacatctttcagatttactaactccgaaggcagtatctctactagttgcaaatcagatccttaatgcatttgtgcttttttacaacatagaagttctattgtttcctttctcatatatgtactgattactgactcatcaatagggtctttgaaggtgctctcttggtagttttacaggctacaattttctttctgacagggtctttgaattagccatttgctcttcactaaatttatctgttatgctattctaattgccatggactacatatattcttctgtggttctctgtacactagatatgtttactctgtacactactgatgattattcatttcatttactctgtccattattttgcaggcaaccataaaaagggctagcagaggtgctgtaaaaaaaatcaagaacctacaagaaccataaaagagatgatttgttttgttttgggacctcaatacacctacaagaaccttagttacatctaaattatgtaattattgctatgtacttgaactcttatgtaatagctatttgagctgatggataactgctatataggaatactgctacttgatgggtgaacaatagttacatgatgatatgtcagaatgcatttgtgaacaatagttatgaatagttgaatattgtgttatgcatgtgtgtaacttactgaaaggtgataatccgtgttgcaaaatttggagtgatattcatccatatatatgctgcaaatttaatttga
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| CDS seq | atgtttcgtccgttggatgttgatcccacggttaggatagagcgagaaaaccacgccgaaaagaaaatccaccccaaaaaggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtggtggtgtgtgccgggtagaggaggaggaggaagcgagggcgtcggacttgtgcgtgcgcaggtccaggggcaggacgacattcgacgcggtcgccgacgagcctaggacacgaacaaatgcagaaaatggaggtgttgatgctaatgatcctcgaaatatgcccttagctggtgaagaaaatgttccaggtgttaataatgtacagctacaaaagaaggtacacaagaagacagcaaagactaaccagcgagcaggcaaccataaaaagggctag
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| Protein seq | MFRPLDVDPTVRIERENHAEKKIHPKKENPRLAPRAAISPPSTAHRLLRQIHRRGARPPPLPRRAATSLLSPHPPRCRSRPRARPGGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEPRTRTNAENGGVDANDPRNMPLAGEENVPGVNNVQLQKKVHKKTAKTNQRAGNHKKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0017330 | OsKeNa_06g0017330.01 | Chr06 | 19076541 | 19079680 | + | NAM | ||
| CDS seq | atgtttcgtccgttggatgttgatcccacggttaggatagagcgagaaaaccacgccgaaaagaaaatccaccccaaaaaggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtggtggtgtgtgccgggtagaggaggaggaggaagcgagggcgtcggacttgtgcgtgcgcaggtccaggggcaggacgacattcgacgcggtcgccgacgaggtctcctag
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| Protein seq | MFRPLDVDPTVRIERENHAEKKIHPKKENPRLAPRAAISPPSTAHRLLRQIHRRGARPPPLPRRAATSLLSPHPPRCRSRPRARPGGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0017330 | OsKeNa_06g0017330.02 | Chr06 | 19076541 | 19079680 | + | NAM | ||
| CDS seq | atgtttcgtccgttggatgttgatcccacggttaggatagagcgaggtgatcggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtttgtggtggtgtgtgccgggtagaggaggaggaggaagcgagggcgtcggacttgtgcgtgcgcaggtccaggggcaggacgacattcgacgcggtcgccgacgaggtctcctag
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| Protein seq | MFRPLDVDPTVRIERGDRKTLGSHRAPPFLPLPPRTASSAKSTAAARGLLLCRGVPPPRSSLPIHRAAGVDLAPAQVCGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0017330 | OsKeNa_06g0017330.03 | Chr06 | 19076541 | 19079680 | + | NAM | ||
| CDS seq | atgtttcgtccgttggatgttgatcccacggttaggatagagcgagaaaaccacgccgaaaagaaaatccaccccaaaaaggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtggtggtgtgtgccgggtagaggaggaggaggaagcgagggcgtcggacttgtgcgtgcgcaggtccaggggcaggacgacattcgacgcggtcgccgacgagcctaggacacgaacaaatgcagaaaatggaggtgttgatgctaatgatcctcgaaatatgcccttagctggtgaagaaaatgttccaggtgttaataatgtacagctacaaaagaaggtacacaagaagacagcaaagactaaccagcgagcaggcaaccataaaaagggctag
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| Protein seq | MFRPLDVDPTVRIERENHAEKKIHPKKENPRLAPRAAISPPSTAHRLLRQIHRRGARPPPLPRRAATSLLSPHPPRCRSRPRARPGGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEPRTRTNAENGGVDANDPRNMPLAGEENVPGVNNVQLQKKVHKKTAKTNQRAGNHKKG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0017330 | OsKeNa_06g0017330.04 | Chr06 | 19076666 | 19079557 | + | IsoSeq | ||
| CDS seq | accccaaaaaggaaaaccctaggctcgcaccgcgcgccgccatttctcccccttccaccgcgcaccgcctcctccgccaaatccaccgccgcggcgcgcggcctcctcctctgccgcggcgtgccgccacctcgCTCctctctccccatccaccgcgctgccggagtcgacctcgcgcccgcccaggtggtggtgtgtgcc
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| Protein seq | TPKRKTLGSHRAPPFLPLPPRTASSAKSTAAARGLLLCRGVPPPRSSLPIHRAAGVDLAPAQVVVCA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 19077036 | 19078512 | + | OsKeNa_06g0017330.04 | OsKeNa_06g0017330.03,OsKeNa_06g0017330.04 | All |
| RI | Chr06 | 19076933 | 19078587 | + | OsKeNa_06g0017330.01,OsKeNa_06g0017330.02 | OsKeNa_06g0017330.03,OsKeNa_06g0017330.01,OsKeNa_06g0017330.02 | All |
| RI | Chr06 | 19076933 | 19078587 | + | OsKeNa_06g0017330.01,OsKeNa_06g0017330.02 | OsKeNa_06g0017330.01,OsKeNa_06g0017330.02,OsKeNa_06g0017330.04 | All |
| A5 | Chr06 | 19076851 | 19076933 | + | OsKeNa_06g0017330.02 | OsKeNa_06g0017330.03,OsKeNa_06g0017330.01,OsKeNa_06g0017330.02,OsKeNa_06g0017330.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.243281 | 3.403311 | 2.553454 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0606100 | RBH | 2.638348 | 3.120682 | 6.084174 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40415 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0606100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021830 | RBH | 2.317216 | 28.982933 | 32.997223 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017420 | RBH | 2.546147 | 18.402184 | 18.476770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
