Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0013360 | OGI:06035540 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:12003833-12007092 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagatggtgcccatccatatgctgatgttgttggtggccacggcgttctcttggtggggcacccgccggaagaacatcaccaggtccatggcaacgctgaagaaggcgaactaaatgtatatacctagcaaagtttaaaaataaaataaaaaaacatttataaatatgaTttgtgaaaTTatgcaattagtttgatatctctggtatggcgaggtatttctaaaatgataagaaggcatatacctcttcaagaagaggacaaaacctaaaaacatcatattctttttatattatactccctccttccttaaatgtttgacgccgttgacttttttaaatatgtttgaccgttcgtcttattcaaaaatttttgtgaaatatataaaactatatgtatacataaaagtatatttaacaataaatcaaatgataggaaaagaattaataattacttaaattttttgaataagacaaacggtcaaacatattttaaaaagtcaacggcgtcaaacattttggaatggagggagaaccaattaagtacctccccaagatgatgtcctttagattgctacttgttacgttgaatattataattgaatatgataggtaacacttcagaatcatttgttctgtttgtacttattatttgtcggcgaattaatcaaaccaagaataaaaactctaaaatttttagtctatccttattactttctagtagagtggtaagtgagttgtgacacctttttcctcaactacttttttttaaaagccaatggaagatgttgaatctgtgggatcatgctctccatgcaattccatgatacgcaatgagtcatttgtgcacactgaagatcagacccaacATttccagggaagcccagaactgaagacttcaagaggaaagatgacaatggcactacttcttggtagaaatttaatccccacaatctcatcccaACTctctctTttttttcgtggttaatagtgtttgatttactaatagtccagtatttataccaatataatgtggagaacaatctatcaTtttatacaatactagtcataggaccgtgccttgcaaacggatgtgatatggtgaatgtggtttaaTtttttttctcttctcccatatttttctctcaattggttagttttttctagtgtttcttatggatagaatgggaataaggatgactgtgcttttaagatatatagtagagataaactaaccagtgttgaacaacactgcaatgcaaaatgggggcatatatagtggtttaatccaaaagaaattaaaatatttattttacctcagtgattaagcagctctacttgacgatgcagtgagctatgtgttggccaactttgcattttttggcgtcgccgtgggcctggtggtgttcctcaggcaggtgctccaccaggagaacgccgaggccgccaatagcgtcagcatgtggatgggcaccgtctacatcttctccctCttctgtgctttcctgagtgactcctatatggggcgctacatcacttgcatcatgttccaattcatcttcatcgtggtatgtaatccttctcttgtcaaacaggtgatatcctgaaaaatatgcagtcagatatcaggataaactcagcagtagtataaaatataacaacataaatactgtgtcaacattttaaacaatcttatttatgtaaaaagcagagcatatgtgcaattttgatttcagacgactgaaaatagcaaaactgaattataagtttaaagttattataaggttaagagtgtcagcagttgatgcatgagacaagtttaatttcttgtgtgttttggcatgcaggggttgatgctcctgtcgctgttgtcgtggttcttgctggtggagccgccGGggtgcggcgacggcggcgggctcaggcagtgcgcggcgccgtcccggcgtggcgtcgCggtgttctacctgtccatctacatggcggcgttcgggaacggcgggtaccagccgtcggtggcgacgttcggcgccgaccagttcgacgacgccgaccccggcgagcggcggcgcaagcaggccttcttctgcctcttctacctctcgctcaacgtcggctccctcttctacaactccgtcctggtgttcttcgaggacaggggccggtgggtcgccggcttctgggtctccaccgccgccgccgcgctcgcgctcgcgctctttctcctcggcacgccgcgctaccgccgggtccgacctgccggcaacccgctcacccgcatcgcccaggtgttcgtcgccgcgtaccgcaagcggcacatcgtgccgccgcccggcgaccacctccacgaggtcgatggcgagggctcggcgatccgtggcgtcggcaagctcgcccacagcgaccagctcaggtttcttgacaaggcggcgacggcgacggaggaggactaccacgacgggaacgccaagaacccgtggagactgtgcacggtgacgcaggtggaggaggccaagtgcgtggtgagcatggtgcccatctggatctgcagcatcgtctactccgtggagttcacccagatgtcgtccttgttcgtggagcaaggcgcggccatggacaccgacatcctgggcctgttcaacgcgccggccgcgtccatgtcggtgttcgacgtcgccggcgtgctcgccacgctcgccttctcccactacgtcctggtgcccgcggcggcgaggctgaccaagaacccgcgcggcgtcggcgagctcaagcgcatgggcgcgggcctcgtgatcgcgctgctcggcatggtcgccgcggcggtcgtcgaggtccaccgccgccgccgatccggcgccggcggccgcgccatgagcgtgctgtggcaggcgccgcagtacgcggtgatgggcgcgtcggaggtgttcgtgtacgtggggcagctggagttcttcaacgtgcagtcgccggaGggggGTGAAGAGCCTGGGGAGCTCGCTGTGCATGGCGTCCATCTCGCTGGGGAACTACGCCAGCATGGTGATGTTGAGCGCCATCAGCGGCGTCACCTCGCGGCGGCGGACCGGCGGAGGGACGGCGGGGTGGATCCTGGCCGAGCTCGACCGCGGCCACCTCGACCGCTTCTTCATCACCCTCGCCGTGCTGTCCGCCGTGGACCTCGTCGTGTTCATCGTGTTCGCGCGGTTGTTCAAGGGCATCGAGCCGGAGGTGGAGGGGATCAGCTCCAGTCCACAGGATGA
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| CDS seq | atgaagatggtgcccatccatatgctgatgttgttggtggccacggcgttctcttggtggggcacccgccggaagaacatcaccagatcagacccaacATttccagggaagcccagaactgaagacttcaagaggaaagatgacaatggcactacttcttgctatgtgttggccaactttgcattttttggcgtcgccgtgggcctggtggtgttcctcaggcaggtgctccaccaggagaacgccgaggccgccaatagcgtcagcatgtggatgggcaccgtctacatcttctccctCttctgtgctttcctgagtgactcctatatggggcgctacatcacttgcatcatgttccaattcatcttcatcgtggggttgatgctcctgtcgctgttgtcgtggttcttgctggtggagccgccGGggtgcggcgacggcggcgggctcaggcagtgcgcggcgccgtcccggcgtggcgtcgCggtgttctacctgtccatctacatggcggcgttcgggaacggcgggtaccagccgtcggtggcgacgttcggcgccgaccagttcgacgacgccgaccccggcgagcggcggcgcaagcaggccttcttctgcctcttctacctctcgctcaacgtcggctccctcttctacaactccgtcctggtgttcttcgaggacaggggccggtgggtcgccggcttctgggtctccaccgccgccgccgcgctcgcgctcgcgctctttctcctcggcacgccgcgctaccgccgggtccgacctgccggcaacccgctcacccgcatcgcccaggtgttcgtcgccgcgtaccgcaagcggcacatcgtgccgccgcccggcgaccacctccacgaggtcgatggcgagggctcggcgatccgtggcgtcggcaagctcgcccacagcgaccagctcaggtttcttgacaaggcggcgacggcgacggaggaggactaccacgacgggaacgccaagaacccgtggagactgtgcacggtgacgcaggtggaggaggccaagtgcgtggtgagcatggtgcccatctggatctgcagcatcgtctactccgtggagttcacccagatgtcgtccttgttcgtggagcaaggcgcggccatggacaccgacatcctgggcctgttcaacgcgccggccgcgtccatgtcggtgttcgacgtcgccggcgtgctcgccacgctcgccttctcccactacgtcctggtgcccgcggcggcgaggctgaccaagaacccgcgcggcgtcggcgagctcaagcgcatgggcgcgggcctcgtgatcgcgctgctcggcatggtcgccgcggcggtcgtcgaggtccaccgccgccgccgatccggcgccggcggccgcgccatgagcgtgctgtggcaggcgccgcagtacgcggtgatgggcgcgtcggaggtgttcgtgtacgtggggcagctggagttcttcaacgtgcagtcgccggaGggggGTGAAGAGCCTGGGGAGCTCGCTGTGCATGGCGTCCATCTCGCTGGGGAACTACGCCAGCATGGTGATGTTGAGCGCCATCAGCGGCGTCACCTCGCGGCGGCGGACCGGCGGAGGGACGGCGGGGTGGATCCTGGCCGAGCTCGACCGCGGCCACCTCGACCGCTTCTTCATCACCCTCGCCGTGCTGTCCGCCGTGGACCTCGTCGTGTTCATCGTGTTCGCGCGGTTGTTCAAGGGCATCGAGCCGGAGGTGGAGGGGATCAGCTCCAGTCCACAGGATGA
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| Protein seq | MKMVPIHMLMLLVATAFSWWGTRRKNITRSDPTFPGKPRTEDFKRKDDNGTTSCYVLANFAFFGVAVGLVVFLRQVLHQENAEAANSVSMWMGTVYIFSLFCAFLSDSYMGRYITCIMFQFIFIVGLMLLSLLSWFLLVEPPGCGDGGGLRQCAAPSRRGVAVFYLSIYMAAFGNGGYQPSVATFGADQFDDADPGERRRKQAFFCLFYLSLNVGSLFYNSVLVFFEDRGRWVAGFWVSTAAAALALALFLLGTPRYRRVRPAGNPLTRIAQVFVAAYRKRHIVPPPGDHLHEVDGEGSAIRGVGKLAHSDQLRFLDKAATATEEDYHDGNAKNPWRLCTVTQVEEAKCVVSMVPIWICSIVYSVEFTQMSSLFVEQGAAMDTDILGLFNAPAASMSVFDVAGVLATLAFSHYVLVPAAARLTKNPRGVGELKRMGAGLVIALLGMVAAAVVEVHRRRRSGAGGRAMSVLWQAPQYAVMGASEVFVYVGQLEFFNVQSPEGGEEPGELAVHGVHLAGELRQHGDVERHQRRHLAAADRRRDGGVDPGRARPRPPRPLLHHPRRAVRRGPRRVHRVRAVVQGHRAGGGGDQLQSTG |
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| Function | Protein NRT1/ PTR FAMILY 7.1 [UniProtKB/Swiss-Prot:Q3E9B5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0013360 | OsKeNa_06g0013360.01 | Chr06 | 12003833 | 12007092 | + | NAM | ||
| CDS seq | atgaagatggtgcccatccatatgctgatgttgttggtggccacggcgttctcttggtggggcacccgccggaagaacatcaccagatcagacccaacATttccagggaagcccagaactgaagacttcaagaggaaagatgacaatggcactacttcttgctatgtgttggccaactttgcattttttggcgtcgccgtgggcctggtggtgttcctcaggcaggtgctccaccaggagaacgccgaggccgccaatagcgtcagcatgtggatgggcaccgtctacatcttctccctCttctgtgctttcctgagtgactcctatatggggcgctacatcacttgcatcatgttccaattcatcttcatcgtggggttgatgctcctgtcgctgttgtcgtggttcttgctggtggagccgccGGggtgcggcgacggcggcgggctcaggcagtgcgcggcgccgtcccggcgtggcgtcgCggtgttctacctgtccatctacatggcggcgttcgggaacggcgggtaccagccgtcggtggcgacgttcggcgccgaccagttcgacgacgccgaccccggcgagcggcggcgcaagcaggccttcttctgcctcttctacctctcgctcaacgtcggctccctcttctacaactccgtcctggtgttcttcgaggacaggggccggtgggtcgccggcttctgggtctccaccgccgccgccgcgctcgcgctcgcgctctttctcctcggcacgccgcgctaccgccgggtccgacctgccggcaacccgctcacccgcatcgcccaggtgttcgtcgccgcgtaccgcaagcggcacatcgtgccgccgcccggcgaccacctccacgaggtcgatggcgagggctcggcgatccgtggcgtcggcaagctcgcccacagcgaccagctcaggtttcttgacaaggcggcgacggcgacggaggaggactaccacgacgggaacgccaagaacccgtggagactgtgcacggtgacgcaggtggaggaggccaagtgcgtggtgagcatggtgcccatctggatctgcagcatcgtctactccgtggagttcacccagatgtcgtccttgttcgtggagcaaggcgcggccatggacaccgacatcctgggcctgttcaacgcgccggccgcgtccatgtcggtgttcgacgtcgccggcgtgctcgccacgctcgccttctcccactacgtcctggtgcccgcggcggcgaggctgaccaagaacccgcgcggcgtcggcgagctcaagcgcatgggcgcgggcctcgtgatcgcgctgctcggcatggtcgccgcggcggtcgtcgaggtccaccgccgccgccgatccggcgccggcggccgcgccatgagcgtgctgtggcaggcgccgcagtacgcggtgatgggcgcgtcggaggtgttcgtgtacgtggggcagctggagttcttcaacgtgcagtcgccggaGggggGTGAAGAGCCTGGGGAGCTCGCTGTGCATGGCGTCCATCTCGCTGGGGAACTACGCCAGCATGGTGATGTTGAGCGCCATCAGCGGCGTCACCTCGCGGCGGCGGACCGGCGGAGGGACGGCGGGGTGGATCCTGGCCGAGCTCGACCGCGGCCACCTCGACCGCTTCTTCATCACCCTCGCCGTGCTGTCCGCCGTGGACCTCGTCGTGTTCATCGTGTTCGCGCGGTTGTTCAAGGGCATCGAGCCGGAGGTGGAGGGGATCAGCTCCAGTCCACAGGATGA
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| Protein seq | MKMVPIHMLMLLVATAFSWWGTRRKNITRSDPTFPGKPRTEDFKRKDDNGTTSCYVLANFAFFGVAVGLVVFLRQVLHQENAEAANSVSMWMGTVYIFSLFCAFLSDSYMGRYITCIMFQFIFIVGLMLLSLLSWFLLVEPPGCGDGGGLRQCAAPSRRGVAVFYLSIYMAAFGNGGYQPSVATFGADQFDDADPGERRRKQAFFCLFYLSLNVGSLFYNSVLVFFEDRGRWVAGFWVSTAAAALALALFLLGTPRYRRVRPAGNPLTRIAQVFVAAYRKRHIVPPPGDHLHEVDGEGSAIRGVGKLAHSDQLRFLDKAATATEEDYHDGNAKNPWRLCTVTQVEEAKCVVSMVPIWICSIVYSVEFTQMSSLFVEQGAAMDTDILGLFNAPAASMSVFDVAGVLATLAFSHYVLVPAAARLTKNPRGVGELKRMGAGLVIALLGMVAAAVVEVHRRRRSGAGGRAMSVLWQAPQYAVMGASEVFVYVGQLEFFNVQSPEGGEEPGELAVHGVHLAGELRQHGDVERHQRRHLAAADRRRDGGVDPGRARPRPPRPLLHHPRRAVRRGPRRVHRVRAVVQGHRAGGGGDQLQSTG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.601458 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0324300 | RBH | 0.0 | 0.0 | 1.344563 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g21900 | RBH | 0.0 | 0.0 | 0.411850 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0324300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031470 | RBH | 0.0 | 0.0 | 3.182716 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013480 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0204100 | RBH | 0 | 0.160735 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013090 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0199800 | RBH | 0 | 0.31222 | 0.0059785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013550 | RBH | 0.0 | 1.667243 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013270 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013560 | RBH | 0.0 | 0.0 | 0.0 |
