Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0012480 | OGI:06032310 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:10939895-10946699 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaaatgtgagatggtgaaatgactcagacttacatatcaattaaccaatgatAaatgataactcaaatcttcatgttcttatactgcttttcttttcaccctgaacatttagaacccaaacacacccatagtttacatgtacatgatgaacattttggcttgattgctaacaagcagccatataacataataatctttcacattgataagtattatcttcacctaaagtagttaccctgtatttatttgtacatctatatttgtttatgacatgtaaaactaggtcctagagccacactcgtaacttcctggcacatgtatatgcatttacatgtgatgaatgaatttgcagttaagaagttgtcacttctgtgcctgagcagagataggaggcggcggcagcagcagaagaagcagcattgctcttttacctagcttgagtcggccagctgcagtttgggtcctcagctgcagccgccggcggcgaagccgatcctggactgcgcgacgtcgtacaccacgctgaacgtctgctgctgcgtgttcccgatgatcgccgtgccgccggtcggcgcgaacgccaggcacgtcgtggagtcgtcgacgtcgatgagcacgttcccgggggacagcgccagcgtcgcgccgccggcgaacgccatgtccacgcgcgggacgcgcagccccgcggcggagccccggaagcaggtgtccaggatggagtaggtcggcgcccgcggcgcggcgccggccatggccgcggccacggccctgctcagcgccgtgtacacgttcggcggcagccgcgtgatcaccgtgccggagtcgatgatcgtcggcaggctgcggtactccgacggcggcacggcgagcggcgccccggcgaccgagatccccgacagggtgacgaagtagagcgaggcgtcgagggagctggacgccatgggcgtgtacgagtactggccggggttgtacgagccgatggagaggtagcccgccgccgccgacgaggtcgggaggcagtaggagaaggcgtagccgaggctcggggctagctggtagagcagcgagagcttgttcttggcgaggccgatgagccccgcggagcggccgaagaggccctcgttgtcttggccgcagcCGTAGTAGAAGCCCGGGAAGCTGCCGGAGCCGAaggagacggtgtccttgctgaggtagccgacggagtaggagctgtcgccgtagctggcctggtagatgcagacgttggagacggagcaggcggaggggttgagcgtggcggcctggagctcgccgcactccgacgaggagcactgcacggcggcgtacgtgcccgacgcgcgcgggtcgaacaccgggccggcctgccggtggcacgacaccgagcacggggagcactgcagccaggtgagcgacgaccccgtgtcgaccaccatcacgtaggaggtcgccggcgtgccgaggcccaggcgggtcacgtagttgccgacggccaccgacgcgcccggcgtcagcggcacggacgacgacgacgcctgcgagccgccgacgccgccggccttcttcttgcggtggccgtggaggagagacgatgacgacggcgatgtcgggtggttgttggcgaggcgcgaggcgaggtgggcgatgcgggcgtcgtcgtgggtgacgatggcggagaaggggaggtcggaggggagcggcgccggcgagcaggggctctgcgggtggtgcagcgtcaggtgcagtccggagctgttcaggtgctggaaatctgcaacaaacaatttaaattaaccttacaTttttttttgaacataaattttgaaatttgaacagattaacactagtaaattcgaacaaacttttgtcaaatttaaataatttagaaacattaTtttttgtagaggcgcgtcgggcttatcatggtccaaattttgcaaatttacttccgaaactatgaacccaaacctaaacaattgctccatcagtcttaaaatatatcaacttttgtaagcatttcaaatttaccctaaaatttaacaatttttccaactatattatcttcttaacgattcacttgttgagaacattccccatttaatctcttaacctaatttttcttctaattcaatcaaaacatttcttctgtttaattccacctacttttttttaatatgtttaatcctaaattgtttttatattttaggatgaagatacagaactaatcacttgatcatagggaaagcccaattgtttaactcagtagcagaaactccactaactctgccaagtgactgaaacagatgcttgctagctaggagtatattcattccagaatataataatttttagggttgaatacgagtattaagaaaatatgtggaattaaatgtgaaaaGaatgtgattgctagggacaagaaagtagcaagggacaagaaagtagcagtggctctagaagttttcattgggtgatcctacccccataattcgaaattgcataatatcaaatttacatctattttatcaaaattacatctttttttaaaaaaaatatttaacggatagggtaatccaaaggctaccctcaaaacctctataaccaccacaaaaaataactgtaaaatttaaatgaaataagattataattggttgagaagaaaatgaacatgaaaaagttattaagttttaggataaattttaaatgttaaaaattattatattttaggatagggctagtagccactggctaatcagctaattaacctagctaggtaggtgccggccgtagggccggagacaatcgtgttgtgccacaagtagttctggtatttgtggtcgatcgtgcgacaatgcgacgagacagtgatgcgccaccaaatgcaagcagcggcaccgagctatcgatcgatcgatcaacaagtcgcaggtctgaagaactttctcaagaacaaacgcatgtgactgcctacactgtccaatactctctgtgtccacgtacagatatcatcctcgatttgacccagtacgtacgtacttgtggtcgtacatcaatctgtctgtatatatagcttttgatcgataagcttgtcgccgtatgcatcacgttgcagattaagctagccaaacaattatacatgcattgatctcggacagacaggcaggctggccagccgacacagattttggcattagcgtatataggtgagcatagtttagtataatctttcatgtaactatgtacgtgcgttgcaatgggtgaatgctattttaatcttattattgttatatgattcgcttaggtgtttttttaaaaaaaatcataagctacggttaggagtttgatatatagtctcaaattagcatacgagtttttttaaagagatttcttatacgattccttttgtatttctaaaaatgaacgagacagatgacatattaaagtaccggtaaaaatattttttaTttttatagtagagattaaggaacgaaatcgctacaaaattgtccgacagtttttttctcaaaaagctttcactttgtagattttcaaaggagtgttaagattcatgcaaatttgagaaggccataaaattgctgccgcgcgcgaggtgaggattagacctacgacctcacgcacatatgctcgtggtgctaatcgaccttctgtacttaattgcttaatctaagttcagttacaatataattacattctaactatagttacatttaaaatagttacatttaaaagttctttttttaaaaaaaaactatcgaattaatgttgtatagatataatccatcgagaaaaggccaAACCaatgtcacgtttgattatattcgatatgctattgttgtgtaccacagtattgttcgataatcgataggttggtgtgtgttctcaaaaaaaaaaaagttaggttggtgtggggtcatacggtcacgtgtgattgtgtgaatgatctgttgcaggattgtatgtacttgagtacaatatacatggaccatggagtgcagaatctgtcctaacacgattgggaattttgggtcctagctagctatatatatgcctaggttcttcatgtctgcctccaatttccaaaacgatgattatacaactgaaagtatgcgtccatttgttacatgcactttcatcaggtgtcacatgcatactcacacctccttgatcagataatactccctcattacttttctaaacatgtttaaccgttcgtcttatttaaaaacttttgtgaaatatgtaaaactatatatatacataatagtatatttaataataaatcaaatgatagaaaaaaaattaataattacttaatttttttaataagacgaacggtcaaacattttaaaaaaagtcgacggcgtcgaacattttaggatggagggagtataaattgccatggccgttctttctctttcttttttttattaagggtgcaattgtcggacgatcatccgtcagatgaggtttctcaatcattttttgatgtgttcttttttgaaaatatcaccaccacaattgcatatttagggcagttatttttaattagttaacggaagacggattatcatgcataggttttttaatattctaaacggtacgattaattttacgtgaacttttcatcggcatttctaagaaaactttgtaaaccgaaatttaaggtttcgactattaaattcatttgtttgtgcttttaaataacttttataattaagcttggtttcatccatcatccatcaacaccaagctgttggttgtgttatgcagaacaacaaagagagaaactatgttgttttctacacgcacatttttttaactgttgaacgatgtgtttttctaaaaacaactatagttattttaaaaaaattatattaatctatttttcaaattaaaataattaatattcaattaattatatactaatatctcacgtcgttttacgtatattctcaattttctcatttcccatcctcgtaaacacacccttagaacgttttgagtgaacaacacacaataatagtaacagagtgttaacagagggctggggtcaaaacgagtcaagcggagtcaagagtaaaccaaacaattttgtggacttgattactcagaatttaatcggtgcacgcgagagtctattcgccacacgtcattggttgactcttctctgtagatgatggtcacttttttacaggtagcgtacccccaaaaaacgcctaacatagtgcagaaactagtgcgcatttagaatatttttataccagattagaagcatccaaaaattgttaaatcaaataacttaatcatccatggaccatggtacttgctggattttgtcgagttctatagggtttggtttggaaaattcatagctggaccactgctatttatagcttcaaagaaaagaagcagagcatcacttgattcagtgttcctaaagacaagctccatgtttttcaggtcggctattgataggccaatttgctatagtgttcatcattgctcttaactttgtctgataatatggttgttctgtacttagttgatcagctactttgacgaaagtagtatgttaaaagatcgatcagctcaaagtctgaaactgcagaaggaactcctgatagcagactctctgaataatattaattaccatctctcggcaatttcttcaggttaaaaaggagtcaattacagcctactagaatagatttacaagattcacgttgtgtctctgttttttcctcctgaagccattcctatgctaacttctttagagagattaatgaaatattgcataggataggttcatacggatctctgttatcatggcaaaccaaaaggacaaaaagatgatgattaatagcatctcaattaatcatatcactaaattgaaaagagatcagtactgtgtgtggacctagctagtgacagttgacgcgccatctaccacttccttagttctctcttggattcttgcctctcctagccttcatatttccaaaagcaagagaaaaaggcttgaccatcttgtgcaaagcaaatagagatgaactgaattggaggtggcagcaattggattcacgagatcagtagtacgcaaatttgtatgtgtttggatgtcgtggaaatattcaggaagtaataatgaagcaccgctgcttccaattcaattggatcacagtgtctcagcctttcaggcaagaaacaggctggaattaacactcgtgatctcaggagaaaaaggcaaaaggagacaagataggttgttttatgagttcttttgtttgatctgttttggactaaaacatctaaatgtaactccggccttgacaagaatccagtaatctgttaattctgtacttgtcaagaagattacactgtctctgcttgcaaaaactgtcatgacagttcaagctaagcactaaactattctctctatctatatgggcataatccattggacatactatgttttggtccttaattatattatcaaatctaacaattcacatgatcatacaatacttcagcagtaacagaagaataacagcaaagaaatgacgaggaagcaacagatgaactgaactacatgtagaaaattaagcaaggtcaggcatatataccattgatctgtgaggcacaaacgtcggtgatgtctctgataggggttgcaatggtgaagaggagggagcaggcaaggagaaggggaagaagcacctccattttgatCcccccagctcagctggaagcttcttcaattcagagaagttcagtatggt
More
|
||||||||||
| CDS seq | atggaggtgcttcttccccttctccttgcctgctccctcctcttcaccattgcaacccctatcagagacatcaccgacgtttgtgcctcacagatcaatgatttccagcacctgaacagctccggactgcacctgacgctgcaccacccgcagagcccctgctcgccggcgccgctcccctccgacctccccttctccgccatcgtcacccacgacgacgcccgcatcgcccacctcgcctcgcgcctcgccaacaaccacccgacatcgccgtcgtcatcgtctctcctccacggccaccgcaagaagaaggccggcggcgtcggcggctcgcaggcgtcgtcgtcgtccgtgccgctgacgccgggcgcgtcggtggccgtcggcaactacgtgacccgcctgggcctcggcacgccggcgacctcctacgtgatggtggtcgacacggggtcgtcgctcacctggctgcagtgctccccgtgctcggtgtcgtgccaccggcaggccggcccggtgttcgacccgcgcgcgtcgggcacgtacgccgccgtgcagtgctcctcgtcggagtgcggcgagctccaggccgccacgctcaacccctccgcctgctccgtctccaacgtctgcatctaccaggccagctacggcgacagctcctactccgtcggctacctcagcaaggacaccgtctcctTCGGCTCCGGCAGCTTCCCGGGCTTCTACTACGgctgcggccaagacaacgagggcctcttcggccgctccgcggggctcatcggcctcgccaagaacaagctctcgctgctctaccagctagccccgagcctcggctacgccttctcctactgcctcccgacctcgtcggcggcggcgggctacctctccatcggctcgtacaaccccggccagtactcgtacacgcccatggcgtccagctccctcgacgcctcgctctacttcgtcaccctgtcggggatctcggtcgccggggcgccgctcgccgtgccgccgtcggagtaccgcagcctgccgacgatcatcgactccggcacggtgatcacgcggctgccgccgaacgtgtacacggcgctgagcagggccgtggccgcggccatggccggcgccgcgccgcgggcgccgacctactccatcctggacacctgcttccggggctccgccgcggggctgcgcgtcccgcgcgtggacatggcgttcgccggcggcgcgacgctggcgctgtcccccgggaacgtgctcatcgacgtcgacgactccacgacgtgcctggcgttcgcgccgaccggcggcacggcgatcatcgggaacacgcagcagcagacgttcagcgtggtgtacgacgtcgcgcagtccaggatcggcttcgccgccggcggctgcagctga
More
|
||||||||||
| Protein seq | MEVLLPLLLACSLLFTIATPIRDITDVCASQINDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAIVTHDDARIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTRLGLGTPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGELQAATLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLFGRSAGLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASSSLDASLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAMAGAAPRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAPTGGTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS |
||||||||||
| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0012480 | OsKeNa_06g0012480.01 | Chr06 | 10939916 | 10946699 | - | NAM | ||
| CDS seq | atggaggtgcttcttccccttctccttgcctgctccctcctcttcaccattgcaacccctatcagagacatcaccgacgtttgtgcctcacagatcaatgatttccagcacctgaacagctccggactgcacctgacgctgcaccacccgcagagcccctgctcgccggcgccgctcccctccgacctccccttctccgccatcgtcacccacgacgacgcccgcatcgcccacctcgcctcgcgcctcgccaacaaccacccgacatcgccgtcgtcatcgtctctcctccacggccaccgcaagaagaaggccggcggcgtcggcggctcgcaggcgtcgtcgtcgtccgtgccgctgacgccgggcgcgtcggtggccgtcggcaactacgtgacccgcctgggcctcggcacgccggcgacctcctacgtgatggtggtcgacacggggtcgtcgctcacctggctgcagtgctccccgtgctcggtgtcgtgccaccggcaggccggcccggtgttcgacccgcgcgcgtcgggcacgtacgccgccgtgcagtgctcctcgtcggagtgcggcgagctccaggccgccacgctcaacccctccgcctgctccgtctccaacgtctgcatctaccaggccagctacggcgacagctcctactccgtcggctacctcagcaaggacaccgtctcctTCGGCTCCGGCAGCTTCCCGGGCTTCTACTACGgctgcggccaagacaacgagggcctcttcggccgctccgcggggctcatcggcctcgccaagaacaagctctcgctgctctaccagctagccccgagcctcggctacgccttctcctactgcctcccgacctcgtcggcggcggcgggctacctctccatcggctcgtacaaccccggccagtactcgtacacgcccatggcgtccagctccctcgacgcctcgctctacttcgtcaccctgtcggggatctcggtcgccggggcgccgctcgccgtgccgccgtcggagtaccgcagcctgccgacgatcatcgactccggcacggtgatcacgcggctgccgccgaacgtgtacacggcgctgagcagggccgtggccgcggccatggccggcgccgcgccgcgggcgccgacctactccatcctggacacctgcttccggggctccgccgcggggctgcgcgtcccgcgcgtggacatggcgttcgccggcggcgcgacgctggcgctgtcccccgggaacgtgctcatcgacgtcgacgactccacgacgtgcctggcgttcgcgccgaccggcggcacggcgatcatcgggaacacgcagcagcagacgttcagcgtggtgtacgacgtcgcgcagtccaggatcggcttcgccgccggcggctgcagctga
More
|
|||||||
| Protein seq | MEVLLPLLLACSLLFTIATPIRDITDVCASQINDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAIVTHDDARIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTRLGLGTPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGELQAATLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLFGRSAGLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASSSLDASLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAMAGAAPRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAPTGGTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0012480 | OsKeNa_06g0012480.02 | Chr06 | 10939895 | 10941357 | - | IsoSeq | ||
| CDS seq | atgttatatggctgcttgttagcaatcaagccaaaatgttcatcatgtacatgtaaactatgggtgtgtttgggttctaaatgttca |
|||||||
| Protein seq | MLYGCLLAIKPKCSSCTCKLWVCLGSKCS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.087809 | 17.551250 | 0.776287 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0304600 | RBH | 0.0 | 0.399653 | 1.437198 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g20040 | RBH | 0.0 | 0.262062 | 0.360689 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0304600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012630 | RBH | 0.099620 | 40.538895 | 7.508111 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031760 | RBH | 0.616436 | 21.734766 | 2.194471 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012530 | RBH | 0.0 | 21.380030 | 4.401584 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012580 | RBH | 0.0 | 0.307631 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012720 | RBH | 0.0 | 9.035747 | 13.135235 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0187600 | RBH | 2.121393 | 4.402987 | 0.036606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012170 | RBH | 0.0 | 0.416830 | 1.089039 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0183900 | RBH | 4.31721 | 0.1720815 | 0.0786805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012740 | RBH | 0.0 | 0.172260 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012610 | RBH | 0.0 | 4.741639 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012340 | RBH | 2.343024 | 14.231100 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012830 | RBH | 0.0 | 0.382351 | 0.368504 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012490 | RBH | 0.061718 | 2.846660 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012310 | RBH | 0.0 | 0.923538 | 2.354267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012650 | RBH | 0.0 | 2.072917 | 3.523103 |
