Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0007860 | OGI:06016630 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:5897921-5901541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagatcatgcagctgctctgaccaggctgcttatggcgcaccgccgcgttcaccttgatccggtgcatctccacatgatcccacctctgcaacgaggcgtacatgttggacaggccataggcagcgccgtcgtccaggtccagctccgatatccggtccgccacccactcgcccaccctgacgccgtcctcctccgacgccgacgacaagcggcgggcgtgaagcaggagacacccgagaatcttggcgttcggcctgacgggcatcgcccgcacgacgcgcacggcgtcgccgaggagtccggcgcggcagaggaggtcgaccatgcagccgtagtgctcctcccggggctcgacgccatggaccggcaccatctcggcgaagaacctccggccctccgctaccaggccggagtggctgcacgccgacaggagcgccacgaacgtcaccccgtcgggccggatgatcccgcggcacgttcgactcctcccgaccatgtcgtggaacgccctgacggcgtcctcgccgcggccgttcatgcctagccccgcgatcaccgtgttccagcagaagaggttggggccgtcgggcatggtggcgaagacgtcgagcgcgcggtccacgctcccgcacttgaagtacatgtcgatgagggcgttgcttagcacggcgtcgatccttgtcccgagctgacggatgtagtgatggactcgccggccaaaggcaaagtcccctgcctgcgtgcacgcggtcaccacggtggctatggtgaccgtggtgggcatcatgagcgtctgttgctgcactgtctgtcgcatcaaccggcggaacatggcgatggcggtagcggggtcacctcggcgcaaatacccggccatcatcgtgttccatgtgacaacgtccggcgacggggaagaggagaaagagcagcccatacaatcgaaaagctcctgcgcagcgtccattctcccggccttgcagtacccatcgatcatcgtgttccacgacacgacattgctcgccgtcgccccgaggctcgcctcgaacacctccctggcggagccgaggtcgccggccttgcagtaacacgtaaccatggtgttccacgaggcgggggtcctgtccggcatccgctcgaacagctcccgtgcgtcggccatcctccgggacgcgacgagcgcggccagcatggcgttgaacgcgaccgcatccctgcgaggcatttcgtcgaacagcctccgggcgggatccaggaggccgcgcctggcgtagcgggtgagcagtgcggtggccagcaccgcatcgccggcgaggcccagcttgcaggcgaggcagtggagggcctgctcctcgcggcggccgggggcatccgccaccgcgcggatgagggccgcgcgggcgttcgggagcacccgaagctgcatcagatcagataggcggcgcctgtgaacaactcgttgctcctccgaacggctgctcctcggcgccccgagcgctgatggtggtggccttcctcccaacgtggtctccgtccatgggggtgggtgctcgtgtggccgtgcctcaccggctcacccgtagagctcggctttagcagcagacaatgccgcggggtgggctcgtcggggtggagctccaccgccggccgccgggtgcccgggtgtagggagaggaatgagatcccctcctcaggtcaggtgactttacagcatatggttcatgtaaagatggctactatacgtcagtgactcaaagttatcatgtgacttaatatactttaattttgtgctgtcggtatgattcacgtatcagtgcgacagctacaaattacataaagttactgcacaaagttaagggacttgtttctgagaaggggatataagaagatttttcttttgggcacatagaagatttggaggtgaagaaagtggaaatgggaagggttaattggaccataccattataaataaatttgctcttttttaaaatatcattagtcccttcgtttcaggttataagactttctagcattacccatattcatatagatgttagtaaatctaggcatacatatatatctagatttattaacatatatatgaatgtggcaatgctagaaagtcttgtaatatgaaacggaggaagtactgtttatctaaccgatatcatatcatcatctacatcggcatccacatccaccaaatagctataccaatatccttggacggattcaaagtgaagcggattacataatatcatatccgttttcatctctgaagcgattggttgaaacgatacaggtagtaaattttatttttacttttaaatataagtaacataattgtattaatccaatacaacacgcaatgtcatacaacaatttgttattccccatcgtttcaaaagaaaaccaacccttttggcctctcaccaaaagcaaaaccaagttattcccttcatctcacaatattactacctaatatataattggatattttctagtacaatgatatattaggtggcaaaattttaaaacagaacagtatactacttataactgtcgtagtggtcgccgttgccatcgcgaccgaacgcgatttgaatcagttggagagcaggaggcggcgcacgtccccgttcgggggtttggccagctggcggcagcaacagatggggtaatattgtcccggcttgcagtacgtggtatacgggtacacgtagcccctcttctggcagtactccgggcatgtcaccgaatcacatggcacgatcgcatggcaccaatcatctgtgcacaaatattcgattaagggtcagaacgtttggttgaaaaaaccgataataaatatacaaagaaaaaaaattcgataaattttgataggaatacaaacacaaaacacagtaagatttaaacagaaatataagtacaagataaaaaaaatacataaataatcttttgaatataatagaccaccagaaagacgagggaatcagaaaaaagaaacagaatcaaagatatgtcccaacaagttgaagttcttgctaattttccactaaaattcttatagaattatctattttataggaattttaaagaagtagatagattcaatccttttcaaaggtctttctaagaattttttatacaattgaaatcatccaagtttcctttttttttttgacaatcaaagggaggctcaatgtatgaattaaattttggaagatattgtgtgtcagaatcatttatatagcatgaaacaccatattttgttatacttttcagatgacaccaaaaatatatggctcatataacacaaaacaccgggttaaaaaaatatttcacaattatttgccaatgcaattcttcacatgataaataacagtatttatatgtatactgtgtccaaagttcttcaaatttgactgtcTAtatataaaaaataacatctatttatgaacggatggagaattgagttatacgtattgatacttttgtaaattaagatggcagaaactcttttataattaccttgtgcagcacatgaatagaccatggccatgagtaaaagagacgccaaaaacatgaccctgttagtgtccttgatgttgagaaacgccat
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| CDS seq | atggcgtttctcaacatcaaggacactaacagggtcatgtttttggcgtctcttttactcatggccatggtctattcatgtgctgcacaagctgtcgcactgatacgtgaatcataccgacagcacaaaattaaacttcgggtgctcccgaacgcccgcgcggccctcatccgcgcggtggcggatgcccccggccgccgcgaggagcaggccctccactgcctcgcctgcaagctgggcctcgccggcgatgcggtgctggccaccgcactgctcacccgctacgccaggcgcggcctcctggatcccgcccggaggctgttcgacgaaatgcctcgcagggatgcggtcgcgttcaacgccatgctggccgcgctcgtcgcgtcccggaggatggccgacgcacgggagctgttcgagcggatgccggacaggacccccgcctcgtggaacaccatggttacgtgttactgcaaggccggcgacctcggctccgccagggaggtgttcgaggcgagcctcggggcgacggcgagcaatgtcgtgtcgtggaacacgatgatcgatgggtactgcaaggccgggagaatggacgctgcgcaggagcttttcgattgtatgggctgctctttctcctcttccccgtcgccggacgttgtcacatggaacacgatgatggccgggtatttgcgccgaggtgaccccgctaccgccatcgccatgttccgccggttgatgcgacagacagtgcagcaacagacgctcatgatgcccaccacggtcaccatagccaccgtggtgaccgcgtgcacgcaggcaggggactttgcctttggccggcgagtccatcactacatccgtcagctcgggacaaggatcgacgccgtgctaagcaacgccctcatcgacatgtacttcaagtgcgggagcgtggaccgcgcgctcgacgtcttcgccaccatgcccgacggccccaacctcttctgctggaacacggtgatcgcggggctaggcatgaacggccgcggcgaggacgccgtcagggcgttccacgacatggtcgggaggagtcgaacgtgccgcgggatcatccggcccgacggggtgacgttcgtggcgctcctgtcggcgtgcagccactccggcctggtagcggagggccggaggttcttcgccgagatggtgccggtccatggcgtcgagccccgggaggagcactacggctgcatggtcgacctcctctgccgcgccggactcctcggcgacgccgtgcgcgtcgtgcgggcgatgcccgtcaggccgaacgccaagattctcgggtgtctcctgcttcacgcccgccgcttgtcgtcggcgtcggaggaggacggcgtcagggtgggcgagtgggtggcggaccggatatcggagctggacctggacgacggcgctgcctatggcctgtccaacatgtacgcctcgttgcagaggtgggatcatgtggagatgcaccggatcaaggtgaacgcggcggtgcgccataagcagcctggtcagagcagctgcatgatctag
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| Protein seq | MAFLNIKDTNRVMFLASLLLMAMVYSCAAQAVALIRESYRQHKIKLRVLPNARAALIRAVADAPGRREEQALHCLACKLGLAGDAVLATALLTRYARRGLLDPARRLFDEMPRRDAVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDLGSAREVFEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSPSPDVVTWNTMMAGYLRRGDPATAIAMFRRLMRQTVQQQTLMMPTTVTIATVVTACTQAGDFAFGRRVHHYIRQLGTRIDAVLSNALIDMYFKCGSVDRALDVFATMPDGPNLFCWNTVIAGLGMNGRGEDAVRAFHDMVGRSRTCRGIIRPDGVTFVALLSACSHSGLVAEGRRFFAEMVPVHGVEPREEHYGCMVDLLCRAGLLGDAVRVVRAMPVRPNAKILGCLLLHARRLSSASEEDGVRVGEWVADRISELDLDDGAAYGLSNMYASLQRWDHVEMHRIKVNAAVRHKQPGQSSCMI |
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| Function | Pentatricopeptide repeat-containing protein At3g29230 [UniProtKB/Swiss-Prot:Q9LS72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0007860 | OsKeNa_06g0007860.01 | Chr06 | 5897921 | 5901541 | - | NAM | ||
| CDS seq | atggcgtttctcaacatcaaggacactaacagggtcatgtttttggcgtctcttttactcatggccatggtctattcatgtgctgcacaagctgtcgcactgatacgtgaatcataccgacagcacaaaattaaacttcgggtgctcccgaacgcccgcgcggccctcatccgcgcggtggcggatgcccccggccgccgcgaggagcaggccctccactgcctcgcctgcaagctgggcctcgccggcgatgcggtgctggccaccgcactgctcacccgctacgccaggcgcggcctcctggatcccgcccggaggctgttcgacgaaatgcctcgcagggatgcggtcgcgttcaacgccatgctggccgcgctcgtcgcgtcccggaggatggccgacgcacgggagctgttcgagcggatgccggacaggacccccgcctcgtggaacaccatggttacgtgttactgcaaggccggcgacctcggctccgccagggaggtgttcgaggcgagcctcggggcgacggcgagcaatgtcgtgtcgtggaacacgatgatcgatgggtactgcaaggccgggagaatggacgctgcgcaggagcttttcgattgtatgggctgctctttctcctcttccccgtcgccggacgttgtcacatggaacacgatgatggccgggtatttgcgccgaggtgaccccgctaccgccatcgccatgttccgccggttgatgcgacagacagtgcagcaacagacgctcatgatgcccaccacggtcaccatagccaccgtggtgaccgcgtgcacgcaggcaggggactttgcctttggccggcgagtccatcactacatccgtcagctcgggacaaggatcgacgccgtgctaagcaacgccctcatcgacatgtacttcaagtgcgggagcgtggaccgcgcgctcgacgtcttcgccaccatgcccgacggccccaacctcttctgctggaacacggtgatcgcggggctaggcatgaacggccgcggcgaggacgccgtcagggcgttccacgacatggtcgggaggagtcgaacgtgccgcgggatcatccggcccgacggggtgacgttcgtggcgctcctgtcggcgtgcagccactccggcctggtagcggagggccggaggttcttcgccgagatggtgccggtccatggcgtcgagccccgggaggagcactacggctgcatggtcgacctcctctgccgcgccggactcctcggcgacgccgtgcgcgtcgtgcgggcgatgcccgtcaggccgaacgccaagattctcgggtgtctcctgcttcacgcccgccgcttgtcgtcggcgtcggaggaggacggcgtcagggtgggcgagtgggtggcggaccggatatcggagctggacctggacgacggcgctgcctatggcctgtccaacatgtacgcctcgttgcagaggtgggatcatgtggagatgcaccggatcaaggtgaacgcggcggtgcgccataagcagcctggtcagagcagctgcatgatctag
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| Protein seq | MAFLNIKDTNRVMFLASLLLMAMVYSCAAQAVALIRESYRQHKIKLRVLPNARAALIRAVADAPGRREEQALHCLACKLGLAGDAVLATALLTRYARRGLLDPARRLFDEMPRRDAVAFNAMLAALVASRRMADARELFERMPDRTPASWNTMVTCYCKAGDLGSAREVFEASLGATASNVVSWNTMIDGYCKAGRMDAAQELFDCMGCSFSSSPSPDVVTWNTMMAGYLRRGDPATAIAMFRRLMRQTVQQQTLMMPTTVTIATVVTACTQAGDFAFGRRVHHYIRQLGTRIDAVLSNALIDMYFKCGSVDRALDVFATMPDGPNLFCWNTVIAGLGMNGRGEDAVRAFHDMVGRSRTCRGIIRPDGVTFVALLSACSHSGLVAEGRRFFAEMVPVHGVEPREEHYGCMVDLLCRAGLLGDAVRVVRAMPVRPNAKILGCLLLHARRLSSASEEDGVRVGEWVADRISELDLDDGAAYGLSNMYASLQRWDHVEMHRIKVNAAVRHKQPGQSSCMI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0216400 | RBH | 0.123930 | 0.0 | 0.605804 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11300 | RBH | 0.083808 | 0.0 | 0.155946 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0216400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008010 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035220 | SBH | 0.320648 | 6.796467 | 2.846380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007870 | RBH | 0.0 | 0.0 | 0.216975 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007970 | RBH | 0.039868 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007870 | RBH | 0.0 | 0.0 | 0.704177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0021700 | SBH | 2.493486 | 3.811182 | 0.989352 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0099100 | RBH | 0.228197 | 0.388614 | 1.7232845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G007710 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007980 | RBH | 0.0 | 0.0 | 0.0 |
