Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0004510 | OGI:06009100 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:3182881-3185027 | ||||||||
| Gene Symbol | 2ODD10, 2-ODD10, Os2-ODD10, Os2ODD10 | ||||||||||
| DNA seq | aagcttggactgccacttgctccacccaacgcgcgagtctgtgtgccgccgccgccgccgccgctccgatggaaaccgccgcggcggcgccgccgcgcgtgcaggccctagccgacgccggcgtctccttcctcccggcgcagtacgtccagccgccggaactccgcccggaccccaccaccaccacccaccgccgcgccccgaccgccgcctccctctccgtccccgtcgtcgacctctcatcgcccggtgcgggcgacgccgtccgccgcgcgtgcgccgagtggggcgccttccacgtggtcggccacggcgtccggccggggctgctcgacgcgatgcgtggggcggggctcgccttcttccgctcccccatggaggagaagCtccGGTTCGCCTGCGACCAGGCCAGGGGCGCCGCCGCCGAGGGGTACGGCAGCCGGATGCTCGCCAACGACGACTCCGTGCTTGACTGGCGCGACTACTTCGACCACCACACCCTCCCGGATTCCCGCCGCGATCCCACCCGGTGGCCCGATTTCGTCCCCGGCTACAGGTGATTGCTTGATCAGTTCATGCCTTGAATAATTGCAACTGGTACAGATTTTTGCATGCTTGAAATCATTGAGAAAAATGAGAGTCAATGTTCAGATATGATAACAAATAGAAAGTGGGCAAGGAAAATTTGGTATCCTACATTTTGGGTTGCCTACTTGCCTCTGTTGTTGATTCGGGGTTCATGTTCACCGTGGAGGAATATTATGTCATGCAGATGATATatgattatgagacttaattttgtactttcatttgaagcctgatagttctgcgcgtgtttgaaggatttttcggaatgctgtttgctgttgcattggcatcattgcatcatttctgtgtgtagtcattgcattgagaaaagaatgactcaaaaacatctagtgtcattgactcattgtacagtggacatatccatggaccatcacatattcgcatgagctgcggctttaacagataagctaataacttaatgttcgcagggacactgttgtgaaatacagcgacagcatgaaagatctcgctcaaaaattgctgcgcattgtctctgaaagtctgaacttgccaccttcgtatatagaagaagcagtgggggaagtttatcagaatattactgttagctactattctccttgcccacaacctgatcttgctcttggattgcaatctcattctgatatgggtgcaataacacttctaatacaagatgatgtgggtgggcttgaagtactgaaggacgggctgtggatacctgttccttctttgcctgatggaatccttgtaattttggctgaccagacagaggtaatattccttcacatgctttaatatatgctataccttctaatgctatctaatgtgtaatcaatatgctccaaactaccaaaatacattttgctactccagatgattttattcaagtattatttttatggtacaaattatctgttaggtaatttttgactctttaagtagtattaatctggcatttgcaattcattttagtttcattgcgaacttaagataagaatatggtcctgtgatacttgttcttgctactcatcctgcttgtattgtttcgaatagcttgtttactgttgtattccgagtagctgctaccaatgcgttctttccatataatttggctcctgcaatccaaatgctactaatgtttgcctttctctagatcataaccaatggaagatacaagagtgctgtgcatcgagctattgtcaatgctgatcgtgcccgcttgtcagtagcaacattctacgatccatccaaatctcgaaaaatttgtactgctccacagctcgtttgcaaggagcatccacagaagtaccgggatgtgatatatggtgactatgtctcatcttggtatagcaaaggcccagagggcaagcgcaacattgatgccctcctgatcgagcaatagaaccagaggcagcattatatagacagaatagagacattcatgcgtgttgtgatgctgtccaagattgccgatcttgattaataaagagaataacattgtaccatatgaatggttcctggtttttgaagtttctatgattcttatcaatacttccctt
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| CDS seq | atggaaaccgccgcggcggcgccgccgcgcgtgcaggccctagccgacgccggcgtctccttcctcccggcgcagtacgtccagccgccggaactccgcccggaccccaccaccaccacccaccgccgcgccccgaccgccgcctccctctccgtccccgtcgtcgacctctcatcgcccggtgcgggcgacgccgtccgccgcgcgtgcgccgagtggggcgccttccacgtggtcggccacggcgtccggccggggctgctcgacgcgatgcgtggggcggggctcgccttcttccgctcccccatggaggagaagCtccGGTTCGCCTGCGACCAGGCCAGGGGCGCCGCCGCCGAGGGGTACGGCAGCCGGATGCTCGCCAACGACGACTCCGTGCTTGACTGGCGCGACTACTTCGACCACCACACCCTCCCGGATTCCCGCCGCGATCCCACCCGGTGGCCCGATTTCGTCCCCGGCTACAGggacactgttgtgaaatacagcgacagcatgaaagatctcgctcaaaaattgctgcgcattgtctctgaaagtctgaacttgccaccttcgtatatagaagaagcagtgggggaagtttatcagaatattactgttagctactattctccttgcccacaacctgatcttgctcttggattgcaatctcattctgatatgggtgcaataacacttctaatacaagatgatgtgggtgggcttgaagtactgaaggacgggctgtggatacctgttccttctttgcctgatggaatccttgtaattttggctgaccagacagagatcataaccaatggaagatacaagagtgctgtgcatcgagctattgtcaatgctgatcgtgcccgcttgtcagtagcaacattctacgatccatccaaatctcgaaaaatttgtactgctccacagctcgtttgcaaggagcatccacagaagtaccgggatgtgatatatggtgactatgtctcatcttggtatagcaaaggcccagagggcaagcgcaacattgatgccctcctgatcgagcaatag
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| Protein seq | METAAAAPPRVQALADAGVSFLPAQYVQPPELRPDPTTTTHRRAPTAASLSVPVVDLSSPGAGDAVRRACAEWGAFHVVGHGVRPGLLDAMRGAGLAFFRSPMEEKLRFACDQARGAAAEGYGSRMLANDDSVLDWRDYFDHHTLPDSRRDPTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNITVSYYSPCPQPDLALGLQSHSDMGAITLLIQDDVGGLEVLKDGLWIPVPSLPDGILVILADQTEIITNGRYKSAVHRAIVNADRARLSVATFYDPSKSRKICTAPQLVCKEHPQKYRDVIYGDYVSSWYSKGPEGKRNIDALLIEQ |
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| Function | Probable 2-oxoglutarate-dependent dioxygenase ANS [UniProtKB/Swiss-Prot:O80449] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0004510 | OsKeNa_06g0004510.01 | Chr06 | 3182881 | 3185027 | + | NAM | ||
| CDS seq | atggaaaccgccgcggcggcgccgccgcgcgtgcaggccctagccgacgccggcgtctccttcctcccggcgcagtacgtccagccgccggaactccgcccggaccccaccaccaccacccaccgccgcgccccgaccgccgcctccctctccgtccccgtcgtcgacctctcatcgcccggtgcgggcgacgccgtccgccgcgcgtgcgccgagtggggcgccttccacgtggtcggccacggcgtccggccggggctgctcgacgcgatgcgtggggcggggctcgccttcttccgctcccccatggaggagaagCtccGGTTCGCCTGCGACCAGGCCAGGGGCGCCGCCGCCGAGGGGTACGGCAGCCGGATGCTCGCCAACGACGACTCCGTGCTTGACTGGCGCGACTACTTCGACCACCACACCCTCCCGGATTCCCGCCGCGATCCCACCCGGTGGCCCGATTTCGTCCCCGGCTACAGggacactgttgtgaaatacagcgacagcatgaaagatctcgctcaaaaattgctgcgcattgtctctgaaagtctgaacttgccaccttcgtatatagaagaagcagtgggggaagtttatcagaatattactgttagctactattctccttgcccacaacctgatcttgctcttggattgcaatctcattctgatatgggtgcaataacacttctaatacaagatgatgtgggtgggcttgaagtactgaaggacgggctgtggatacctgttccttctttgcctgatggaatccttgtaattttggctgaccagacagagatcataaccaatggaagatacaagagtgctgtgcatcgagctattgtcaatgctgatcgtgcccgcttgtcagtagcaacattctacgatccatccaaatctcgaaaaatttgtactgctccacagctcgtttgcaaggagcatccacagaagtaccgggatgtgatatatggtgactatgtctcatcttggtatagcaaaggcccagagggcaagcgcaacattgatgccctcctgatcgagcaatag
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| Protein seq | METAAAAPPRVQALADAGVSFLPAQYVQPPELRPDPTTTTHRRAPTAASLSVPVVDLSSPGAGDAVRRACAEWGAFHVVGHGVRPGLLDAMRGAGLAFFRSPMEEKLRFACDQARGAAAEGYGSRMLANDDSVLDWRDYFDHHTLPDSRRDPTRWPDFVPGYRDTVVKYSDSMKDLAQKLLRIVSESLNLPPSYIEEAVGEVYQNITVSYYSPCPQPDLALGLQSHSDMGAITLLIQDDVGGLEVLKDGLWIPVPSLPDGILVILADQTEIITNGRYKSAVHRAIVNADRARLSVATFYDPSKSRKICTAPQLVCKEHPQKYRDVIYGDYVSSWYSKGPEGKRNIDALLIEQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 4.701405 | 1.468633 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0162500 | RBH | 0.580833 | 0.790268 | 1.811869 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06720 | RBH | 0.383365 | 0.518768 | 0.456666 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0162500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004600 | RBH | 0.0 | 7.294623 | 2.445168 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004450 | RBH | 0.940506 | 0.000000 | 4.321578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004570 | RBH | 0.166621 | 0.206272 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004470 | RBH | 1.624259 | 5.331181 | 10.808594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0053800 | SBH | 0.676442 | 2.9091375 | 1.2569045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004360 | RBH | 0.137928 | 0.743729 | 0.592357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0054300 | SBH | 1.3998585 | 4.842602 | 2.1034815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004600 | RBH | 0.119597 | 0.373319 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004460 | RBH | 0.283231 | 9.327735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004510 | RBH | 3.045539 | 17.036236 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004490 | RBH | 0.0 | 0.375358 | 0.452455 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004360 | RBH | 0.118762 | 1.079957 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004270 | RBH | 0.234885 | 1.929487 | 0.265716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004520 | RBH | 0.0 | 11.849728 | 3.626165 |
