Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0002840 | OGI:06005790 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:2125133-2128619 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtttgaaagcgcattgcaaaaacatagccaccccattgcagtaaccgggctaccggaccaatccaatgtgacacacttcgcattaccgagcaaccgagaatttactaagttaaaataataaagagtaacaacaagtcggtgtggaacaattctgcagtccagttcagtaaaaatctagagcaagtcagatacagtagaaagttggaaaagaatggtggtgtatggctgaatcactggaccatcggatcagggttcccagcagcaagtatgtcgagcaacgagttctggggctccatctcttcatgccagagtggtagtttgtcaccagggtgaaatttcctcgaaacaccatcggcatttatctgcaacatgatcatatgcataagtaatccaccaatcctttggaaacatgatgggtagaacgaagagaacaggacatgtctctaaacttaaatctgcattgccaaactgccaaaccatagttgtactgaccaaacatattcagcaaaagaaagctacggaaaatgcaaccaaaacagatggccaagaaagacatgaggttgtccactctacctcactctagcatattttagcacaagagtacagcatgtctgaatgaagcaaagaggtaataccacactgaaatattccgtccttggaagttaaaaggccgatagttttcgctttaagattctttggcacagcatgccaaatatagcacagaaatttatatgtttgtatgaattccactaaaacaatcagttcaggtctctgaagtctgatgtttcaaaatgtctccaataaaggaacaaacaaggacaatagggatgAaaaaagagagcacttacggtgactgtacgaacaacccctccactagcaccatcacgggctatagcaagggaaaccaccttcaccacaaacttctgtagagatgaaagagaagaatcaagttaagagatgaggtggaacaagcaaaaataattatacagggggcactgaagtgatggaaaatggtgtttgcactctatgatcctagacttaacgtgggaagaactgaacataacgtaggcacttcgttctacctaacgcatcgaagaaactatctcttattacacatggtttacaagtaaagcgtacctcagcttcttcctgggacatgccctccttccattcatggtcaagcagtccatacaggtaactggaaccagaacctgcaatactcagaaataacggctagcgtcagaaactgtgattgatataacatagggtaaagtagggactcggacaattttatgatcaatgttctacaactaagccaggttacacaggagtatggtaatcaaagagtatggcaggacattaaaggaagaaatggatcgcgctaatttcaaatgattgcttatgcattgcttaaaaaaaatactgctcaggtaagtttgcaaataaatctcattaataggcttatactattgaactgataattattcttatgtgatacatagatatatagacacaggtggagactacatttcttatttgattactatgagcccaatgaaaagacattcaccataatatttctgggggaaacatacctccaattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttggccaccctcatatttatcccatccaccaacaatcatgccagcttgcaacatgttctgaaaattggtgaaaaaaccaatatggcaattagacaatagcttaaaatcaatgtatgaaagaatcagagaaagaattcatctcatgtattagtgaaattcttgtatcgtagaatgctacagaaaatataccttgttctgataagccaacaacctaattaagttggctgcaactttcacagtagctggttgcccaagctgaattctgcaaatcgagggaaaatttagcatgggctatcttgcacagcaaatattcacagtaactactagttcactgtgttaattaatgaaatctaagtttattattgttcattcagtgccatcctacttagcttaaaaggagagagcattaatagatatattataattacacaagaacaaacttacgtgtgttggtggagaaaatagcgtacatattccgaaatgacttgtgtgtcggcagcctgtgagacaatgagaaatataatactagtgaactattggaaatgctgtatctgataatacttacttacttagtactggactattaacaactatgaaaaagaagcagaaaagaaaatattgaaaatgtgactgtaactcagaaggtataatttcccgctacatcaggcaagccaagacaaggggaaaatgaacaagataagatgcaatggtaaaacaaaaataatcacatcttgcttaatgaagagagtatgttttttacagcatataataataacacgaagcaacaacataaagaagggggcccaagactctaaacaatgtaggcacttacagatccagagcggcagacgtacacattgtcagtcagttgagtaattttgtcagatgcacggttcgccacatacattcctaagaattaacaccacataacaaaggcaattaaattaaagggaaaaaatagacaagcagacagagcacaccaacttaatattgatttcgattggatcaaccacatgctccaatatttggctaagttaataaggcaacatggctaaaacaactaagcttactagtctatgtaagcaaaagatcctaggtacaccagaatcaccgtaaacaccaatgggatgatacttttctcattctttactgttgagtgttaaatgagaaataaatgaacagtgaactcaaccagaacaatagaggttgtacccaacttcccctaattctacatcaaccgaacacacgacaataccaatttttcatatatcaggtcacaccaatttttgtacttatccatccataatatgctgatttaggcagaacacattagtggtacacgaaccaatttccactgacagatacattatccgatccggcagcaaacgctaaacacgtcgcctaatctcacaaaatccatgacctaaacatgggaagcaggatggatggcaggaaccagatgcgctaataacaaaaatccaccgcaacctagcataaacaagggtcggatcgggggtgggggatcgggggagcgtaccggtgctggtccgggagtcggcggcgaggacgacgccgccgtcgtagcagacgccgacgatggtggtccccatccggtgctccccggaggtgggggcgtcgcccgcggcgggagagggggagcccatgagagaggcgtccatggcggcggggagatcggcggatgcggcggcggaaaacccctaagcggcgcggcggcgagagagctcaggtgttcgctggctttggccgccaccgcaagaaagaaaaaaagaggaggcgacgcgatgcgtccggtccgagtcggttcgggcgttggtgc
More
|
||||||||||
| CDS seq | atggacgcctctctcatgggctccccctctcccgccgcgggcgacgcccccacctccggggagcaccggatggggaccaccatcgtcggcgtctgctacgacggcggcgtcgtcctcgccgccgactcccggaccagcaccggaatgtatgtggcgaaccgtgcatctgacaaaattactcaactgactgacaatgtgtacgtctgccgctctggatctgctgccgacacacaagtcatttcggaatatgtacgctattttctccaccaacacacaattcagcttgggcaaccagctactgtgaaagttgcagccaacttaattaggttgttggcttatcagaacaagaacatgttgcaagctggcatgattgttggtggatgggataaatatgagggtggccaaattttctcagtcccccttggtggaacaattctgaggcaaccatttgcaattggaggttctggttccagttacctgtatggactgcttgaccatgaatggaaggagggcatgtcccaggaagaagctgagaagtttgtggtgaaggtggtttcccttgctatagcccgtgatggtgctagtggaggggttgttcgtacagtcaccataaatgccgatggtgtttcgaggaaatttcaccctggtgacaaactaccactctggcatgaagagatggagccccagaactcgttgctcgacatacttgctgctgggaaccctgatccgatggtccagtga
More
|
||||||||||
| Protein seq | MDASLMGSPSPAAGDAPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLPLWHEEMEPQNSLLDILAAGNPDPMVQ |
||||||||||
| Function | Proteasome subunit beta type-6 [UniProtKB/Swiss-Prot:Q8LD27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0002840 | OsKeNa_06g0002840.01 | Chr06 | 2125133 | 2128619 | - | NAM | ||
| CDS seq | atggacgcctctctcatgggctccccctctcccgccgcgggcgacgcccccacctccggggagcaccggatggggaccaccatcgtcggcgtctgctacgacggcggcgtcgtcctcgccgccgactcccggaccagcaccggaatgtatgtggcgaaccgtgcatctgacaaaattactcaactgactgacaatgtgtacgtctgccgctctggatctgctgccgacacacaagtcatttcggaatatgtacgctattttctccaccaacacacaattcagcttgggcaaccagctactgtgaaagttgcagccaacttaattaggttgttggcttatcagaacaagaacatgttgcaagctggcatgattgttggtggatgggataaatatgagggtggccaaattttctcagtcccccttggtggaacaattctgaggcaaccatttgcaattggaggttctggttccagttacctgtatggactgcttgaccatgaatggaaggagggcatgtcccaggaagaagctgagaagtttgtggtgaaggtggtttcccttgctatagcccgtgatggtgctagtggaggggttgttcgtacagtcaccataaatgccgatggtgtttcgaggaaatttcaccctggtgacaaactaccactctggcatgaagagatggagccccagaactcgttgctcgacatacttgctgctgggaaccctgatccgatggtccagtga
More
|
|||||||
| Protein seq | MDASLMGSPSPAAGDAPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLPLWHEEMEPQNSLLDILAAGNPDPMVQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.512041 | 10.062205 | 5.668592 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0139900 | RBH | 3.739462 | 1.143228 | 6.940314 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g04800 | RBH | 2.237635 | 0.680378 | 1.620050 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0139900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0002910 | RBH | 0.669175 | 27.637613 | 4.815734 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035220 | SBH | 0.320648 | 6.796467 | 2.846380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0002780 | RBH | 1.830707 | 28.349680 | 11.761180 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0002750 | RBH | 0.0 | 0.656556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002760 | RBH | 5.188770 | 41.270092 | 21.228354 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0033400 | RBH | 20.4073155 | 21.088175 | 20.167665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0002700 | RBH | 0.683616 | 2.481058 | 1.098859 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0033800 | RBH | 15.8831645 | 10.883731 | 36.935003 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0002830 | RBH | 0.110554 | 0.426225 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0002700 | RBH | 0.000000 | 26.696503 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0002720 | RBH | 3.070024 | 38.401157 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002730 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0002590 | RBH | 0.104576 | 20.662273 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G002650 | RBH | 0.269851 | 11.042949 | 7.251085 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0002820 | RBH | 1.676448 | 20.899412 | 8.611520 |
