Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0028070 | OGI:05078080 | 11/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:29323604-29328839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actaattaatatatccagttcaggtagatatatatatatatatatgttacagacttatacatggttcagatagatagatatactttgtactcatgctatacacgtagaaataaggtaagagtgatagctagacatgcacatggttgagagatcgatcgatcgatatcgaccgcgtgataattaaactgctccttctcctagttattaacatgcatatgcatctgcagatatcgccatatgcatccttgcgtctacgtgaaccacaccacgcatcgtcaatagtcgtacacatcatcatgctatccgcgcgcgattcttcaatcaatacatccacacacctagatcttcaaatgcttcaacctgcagcatatgcaagcacgaagaatatcaattcaccatgactaactaatctatcatctgaaatctaatcaagtagtccatccgtttcataatataagagatttgacttttgcttgtactgtttgaccactcgttatatttaaaaaatttgtacaaatataaaaaacgaaaagttatgtttaaagtactttaaataataaagtaagtcacaaataaaataaataataattttaatttttttaataagacgaatagtcaaacagttaaaaaaagtcaaaatcccttatattatgagacggagggagcagatgattaatcatgtaattactatacctttcggcctggtagccggcggcggcggggcagcggtaggcGgggaaggggaccttgccggactcgatgtgcttgatgtcctcctccagcatctcgtagtagcgcttgacgtcctccgccgacttgccgccgccgacggcgcgggcgatgttgtgccaccggtcgggcgtctccttgtcgtacaccgccagcgcctgctcgaacagcttgttctgcttctgcggccactgcgcccttgcctgctgcgccattgatcacaagttaactgagagctagctaagctaagcttgcaggccggctgtgttagtgtgtgctgagatgagatgaggaggagtgtgagaatgggcgctacttataggcagctagctgggtgtgggcagcagcaagagagagaggattccatggtcgtgggtgtggccgggagaattgtgcttttccggagaagggtcaaaacgatggaggtaagtgatgaggtagagagatagcatgcagctaggcaggaggaacaaacatttctgtccccgggaggtgggcggaggatctctgctagctaaagctagcttattagctctctttctatctcttaatttgctcctgtcgcgtcgcgattcagcttgtttatcgcgcatatgttccatcgatctccatctctgtcctattattcaaagatccaatccaagctatagctatatctggactccacctatggatgtttagttagaacgcgtaatgaagatttgttcgtattcgcagtcagggttggaaacttcgaaccgaaatttcgggatttcggtgacccccgatacaaagggctgtcccgatagagtgaaccctgttcgcagttagttcatttttagcgggaattattagcattgtattcgagaaataattaaagacgcgtgaagggatatgaagttccctcgaggaaatgaaaatgcacttctcatacataaatcatgttcagtttacaaagatgttcagacttcctgtttaaattactgcatggatgttcgattctttttctgacagttatcaaggatgctgctgcatctgaagaaaataattttcagttaccgcttacatattcaattgtttatctcacagttatcgaggacgctgctgcatctgaagaaaatattaatgatcaaatggtcgcggtatgcataagctagctaatccgaagaacaaacaaacaaacaatcaaaatattacttgtagaaagagctgtaataagtgcaattatttggttcagaacattcagtcactgtctccaaatagctagttgcaaagatcggattccatcactggaaagaatgtgtgtggttgtaagatcgatcgaggagcatatatatcttgcttttctgagagagaataatatcaagcaatctagctccaaccttttagtgcatgactctctgtccatggttttagtatcccactacttcatttttattttatttttttgaaaccaatggaaagaaagattctttatgtgattcagtgaaagacatttcttccgtgtgtgtgccgcggctgattctaatttgcccttctttttggcgattcatgagcgtttaaaggcaatccctgttgctttccctatgcgttaatcggaatatggctttaatagacagaacatgatttataaaaatgaatataaaagacagataatttggctgtctctggcacaagaggtactagttagtaattaggttccaatctatatatactttattctgtatcttttcttaattataaggcatgatttgacttggtgtgattttctctgaaaacgaactttgaccattaatttagtttatagttcatccattccatAaaaaaaactaaatcccgtgtttaggatttgtttttttaaagactgaaggagatttatttttctatggacggatggagtaggtttctaccataaatttatggtaataagaagcactttgaaaaacaaatgcattggtatatatgtacttgtaataatcagcaatcaacacatacatgtactgatggaccaagtatatatttagcaaaagaacatgatcaaatgcaTtttttgttgctatatatccccacttgttgtggaaagccttgatccttggaggtggagccatgtgactgatgatgtgatcggtgcgattcgattctcctattttctactccgataggagattcttttctcgcaagttgatgtgtacatatataattcttcattagttcgtccgtgaggagaaaattatacaataaaacgatgtgaatatatatatgagcaccgaacaaagcattctgaatgcaccggccgggagattcttggatacaaatgtagctatatatacacaaatgcatgaaagacatgaaattagactataagggaatacaatgcatgcaaagtagcttagctaacattgcagaccagctagtctatcgatcattaattcgattttactggagttctgatccttgttagacgcccttcttcattttcttgccagacttatatatcttcttgcatgatatacttgatttacagtacatatatatttacttgcatgcatatatatgcgtttatattggtcatgaaggcgctgaggcacggcgtacgtgatcactgtgtcatctgtagcgtttttttttcatgaacgcggaaaagaattgcacgtctagtcatctgtagcgtgatcatcactgatacttcaggtacctagatctgcagggaacagagagtacaatgcatgcattttagtacaccggtgttagtagctgcttaaattagttgctcgtacagtgttttatcgagtagtactagcggtcattctgaagatctcggtcgcgtcaatgtacttgttactatctatgatgttgtttttcattacatgtaatctaaatagttacaaaaaatcAaaaaatatattgataacatggattaatacaaaatatatcacttcacgaacatgcaatactaaattcaacttctacaattacaacagaaataacaaattaaactggaaatagttatcgcacattcacaactatatttgttatttttgttacaacttgtagaagttaaatttaaatttgtatgtttgtggagtgatatatttcattttaatctatgttaaaaaatatattttttgataactatttaggtggcatgcacgaaacgagagatatccgctcgggtgataaaatcactttcccactatctatgtataaaacggaacattgtacagccatgcatatatacaacgtgtatgcatttgtgatatgtataaatatgagcaagttgacggataaagtcggcgtgcatgatcatgcaaatatagtgtggcatgtgtcaagcttaacctaaccctgagaggcatgcatgcactatacactgttccaaacggctatctatatctatctatctgatcaataataaagcttatcactactgtcacactatcacaagtgcccatccctcttaagcacatgcatgagccgccccatggaaatacatgattcaggattagatctcatgtgctgttgtgttggatatatattgctatatgcatcgtcggtacgtgacaccagcgacgctagtcggccaccgcccaccgacgacacacatgcatgcacgcacgcacgcccatcgatcgatcgatcgagcaagcgtacgtagtagaagaacactaccacatgtcgacatgcgcgcgtgtgtgcattcatgcatgcgatcgacatgtacactagctagcactacctctccaaaggttaatcagtaccgactctaaactctctctgtactatctttgtcttaaaacacactatatatgtcgttaacttttccataacatcgatcacatattttatttaaaaatttagtataaatatgtaaaagtatcaattaacatcataatttttattataaaactagtcacaataaaataaataatatttatataattttttaataagataaaatgttaaatgttatatatacattaaaaagtcaacagtattatttactccctctgtttcacaatgtaagtcattctatcattttccacatttatattgATatatatatatatatattcattaacatcaatatgaatgtggaaaatgctagaacgacttatattgtgaaacggaggaagtatttcagaatagattaagtattaaatttatggttggcattacgagtgcgcggtactgatgagagatgaaagacggttaataacctgtttccgtcgtcggctccgcgggaggaggaggaggaggagtagcgggggaaggggacgcggccggactcgatgcgggagacgtcctcgacgaggtggtcgaagtggcggcggacctcgtcggcggacttggcgccgcccatgtagcgggcgatgttgtgccaccggtccggcgtctccttgtcgtacaccgccagcgcgcactcgaactgcttgttctgccgctgcgtccacccgccgccgccgccgccgcgggacgacggcaacgacatcatcgcctgctgctgcttcgagccggccgccgacgccat
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| CDS seq | atggcgtcggcggccggctcgaagcagcagcaggcgatgatgtcgttgccgtcgtcccgcggcggcggcggcggcgggtggacgcagcggcagaacaagcagttcgagtgcgcgctggcggtgtacgacaaggagacgccggaccggtggcacaacatcgcccgctacatgggcggcgccaagtccgccgacgaggtccgccgccacttcgaccacctcgtcgaggacgtctcccgcatcgagtccggccgccaggcaagggcgcagtggccgcagaagcagaacaagctgttcgagcaggcgctggcggtgtacgacaaggagacgcccgaccggtggcacaacatcgcccgcgccgtcggcggcggcaagtcggcggaggacgtcaagcgctactacgagatgctggaggaggacatcaagcacatcgagtccggcaaggtccccttcccCgcctaccgctgccccgccgccgccggctaccaggccgaaaggtatagtaattacatgattaatcatctgctccctccgtctcataatataagggattttgactttttttaa
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| Protein seq | MASAAGSKQQQAMMSLPSSRGGGGGGWTQRQNKQFECALAVYDKETPDRWHNIARYMGGAKSADEVRRHFDHLVEDVSRIESGRQARAQWPQKQNKLFEQALAVYDKETPDRWHNIARAVGGGKSAEDVKRYYEMLEEDIKHIESGKVPFPAYRCPAAAGYQAERYSNYMINHLLPPSHNIRDFDFF |
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| Function | Protein RADIALIS-like 6 [UniProtKB/Swiss-Prot:Q1A173] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0028070 | OsKeNa_05g0028070.01 | Chr05 | 29324217 | 29328839 | - | NAM | ||
| CDS seq | atggcgtcggcggccggctcgaagcagcagcaggcgatgatgtcgttgccgtcgtcccgcggcggcggcggcggcgggtggacgcagcggcagaacaagcagttcgagtgcgcgctggcggtgtacgacaaggagacgccggaccggtggcacaacatcgcccgctacatgggcggcgccaagtccgccgacgaggtccgccgccacttcgaccacctcgtcgaggacgtctcccgcatcgagtccggccgccaggcaagggcgcagtggccgcagaagcagaacaagctgttcgagcaggcgctggcggtgtacgacaaggagacgcccgaccggtggcacaacatcgcccgcgccgtcggcggcggcaagtcggcggaggacgtcaagcgctactacgagatgctggaggaggacatcaagcacatcgagtccggcaaggtccccttcccCgcctaccgctgccccgccgccgccggctaccaggccgaaaggtatagtaattacatgattaatcatctgctccctccgtctcataatataagggattttgactttttttaa
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| Protein seq | MASAAGSKQQQAMMSLPSSRGGGGGGWTQRQNKQFECALAVYDKETPDRWHNIARYMGGAKSADEVRRHFDHLVEDVSRIESGRQARAQWPQKQNKLFEQALAVYDKETPDRWHNIARAVGGGKSAEDVKRYYEMLEEDIKHIESGKVPFPAYRCPAAAGYQAERYSNYMINHLLPPSHNIRDFDFF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0028070 | OsKeNa_05g0028070.02 | Chr05 | 29323604 | 29324621 | - | IsoSeq | ||
| CDS seq | atgatgatgtgtacgactattgacgatgcgtggtgtggttcacgtagacgcaaggatgcatatggcgatatctgcagatgcatatgcatgttaataactaggagaaggagcagtttaattatcacgcggtcgatatcgatcgatcgatctctcaaccatgtgcat |
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| Protein seq | MMMCTTIDDAWCGSRRRKDAYGDICRCICMLITRRRSSLIITRSISIDRSLNHVH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.679369 | 0.000000 | 0.934592 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0579600 | RBH | 5.539238 | 2.196639 | 6.359331 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50340 | RBH | 3.516487 | 1.444069 | 1.067566 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0579600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028270 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026090 | RBH | 0.145554 | 0.0 | 5.282879 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028080 | RBH | 2.997630 | 0.0 | 3.769513 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028120 | RBH | 0.614234 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028010 | RBH | 32.177208 | 0.0 | 7.726104 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0450700 | RBH | 1.083414 | 0.276877 | 0.027614 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027710 | RBH | 0.000000 | 0.0 | 0.317867 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0464200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027840 | RBH | 1.636601 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027960 | RBH | 18.785730 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027980 | RBH | 0.514157 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028010 | RBH | 0.327384 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027520 | RBH | 0.761086 | 0.0 | 1.270748 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027980 | RBH | 1.204375 | 0.000000 | 0.000000 |
