Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0027280 | OGI:05076720 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:28833392-28834881 | ||||||||
| Gene Symbol | Os_F0697 | ||||||||||
| DNA seq | gtctttcttcgccacgactcccctcttcctcccctcctcgccctctcgtcgtcttcttcgccacaagtctcctcttcctcccctcccatctcctcccggctccatggccatgcatacaccaccgtgggaggagctccctgccgacgtccttaggatcgtcttctccagggtcgcatgccgtgcagaccgccaggtgatggccggggtctgcggggcttggcgccgcgccgtgaaggtgaaggtagcaacaggccagccgccacgcccgcgccagcttccctgtctgctgcgccccaacggtggtgattcctccgtctgctgcctgctctgctccggcggccacgggatcagcgtcgtccacgccgcccacctcccgcagcagcccgtcggcgcacgccacgcccgcttcttcgggtctcacgacggcagctgggcgttcctcgcctccgcccaaacaagcggccacgtccttcagaagttcggcaccgacaccatcatcccgctccccgacttcatggatgtgcagggaggagagagctcctccatcgtccacctcgccgcgacgctctcgcaccagccgggccacgccagttgcctcgtcgcggtgatcgtcaagacgtaccccatcgatgtcatgtctttgagagctgtcgcgttctggcgcatggaccatggcaccatggcctccgagctccacagaacagagatcgaggctatggagccagaggacatcatcttccacaagggcgtccttctcgtcctcacccagcaggagaatctactggcgtggatcccagagtacacggacgaggggcgtggagtcgagatgcacggaccggagcagcgcgcctgcggcaagcccaggatctacaacgaactggccgttcagtcacggtacctcgtggagtcccagaactgcctactgctgatcgtgagatacagggagggtcatcccacttcttccacccaagaactcaagatattccagctggtggagcttgagataccggatgagaacggtattatgatgacacgttacaattgggtagagctgttctctctgtttggcgagatgatcttccttgggcgaggctgctccagatcctacaatgtgtccaactacccgggcttcacagaaggcgtatacttcctggacgacgggagcttctaccatgctgacctcctgtcccatgacgctgccgaccagaattacacctgcagtgacaatgggaggtgggtgaacctccaggtcgaccgctgcttcccgccggagcaaagctgctcctgctctcctccgatttgggttctcccttgaagggattgtggttacttctgcaattttactctgctgtaagctgaagtacggttccttgcatgaatgactttcagcttagaacatttattttgagcattgcctctattgtcctggtcacatttctgataattcctgataattcagtagctctctaaatgtcagtggatgattgcag
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| CDS seq | atggccatgcatacaccaccgtgggaggagctccctgccgacgtccttaggatcgtcttctccagggtcgcatgccgtgcagaccgccaggtgatggccggggtctgcggggcttggcgccgcgccgtgaaggtgaaggtagcaacaggccagccgccacgcccgcgccagcttccctgtctgctgcgccccaacggtggtgattcctccgtctgctgcctgctctgctccggcggccacgggatcagcgtcgtccacgccgcccacctcccgcagcagcccgtcggcgcacgccacgcccgcttcttcgggtctcacgacggcagctgggcgttcctcgcctccgcccaaacaagcggccacgtccttcagaagttcggcaccgacaccatcatcccgctccccgacttcatggatgtgcagggaggagagagctcctccatcgtccacctcgccgcgacgctctcgcaccagccgggccacgccagttgcctcgtcgcggtgatcgtcaagacgtaccccatcgatgtcatgtctttgagagctgtcgcgttctggcgcatggaccatggcaccatggcctccgagctccacagaacagagatcgaggctatggagccagaggacatcatcttccacaagggcgtccttctcgtcctcacccagcaggagaatctactggcgtggatcccagagtacacggacgaggggcgtggagtcgagatgcacggaccggagcagcgcgcctgcggcaagcccaggatctacaacgaactggccgttcagtcacggtacctcgtggagtcccagaactgcctactgctgatcgtgagatacagggagggtcatcccacttcttccacccaagaactcaagatattccagctggtggagcttgagataccggatgagaacggtattatgatgacacgttacaattgggtagagctgttctctctgtttggcgagatgatcttccttgggcgaggctgctccagatcctacaatgtgtccaactacccgggcttcacagaaggcgtatacttcctggacgacgggagcttctaccatgctgacctcctgtcccatgacgctgccgaccagaattacacctgcagtgacaatgggaggtgggtgaacctccaggtcgaccgctgcttcccgccggagcaaagctgctcctgctctcctccgatttgggttctcccttga
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| Protein seq | MAMHTPPWEELPADVLRIVFSRVACRADRQVMAGVCGAWRRAVKVKVATGQPPRPRQLPCLLRPNGGDSSVCCLLCSGGHGISVVHAAHLPQQPVGARHARFFGSHDGSWAFLASAQTSGHVLQKFGTDTIIPLPDFMDVQGGESSSIVHLAATLSHQPGHASCLVAVIVKTYPIDVMSLRAVAFWRMDHGTMASELHRTEIEAMEPEDIIFHKGVLLVLTQQENLLAWIPEYTDEGRGVEMHGPEQRACGKPRIYNELAVQSRYLVESQNCLLLIVRYREGHPTSSTQELKIFQLVELEIPDENGIMMTRYNWVELFSLFGEMIFLGRGCSRSYNVSNYPGFTEGVYFLDDGSFYHADLLSHDAADQNYTCSDNGRWVNLQVDRCFPPEQSCSCSPPIWVLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0027280 | OsKeNa_05g0027280.01 | Chr05 | 28833392 | 28834881 | + | NAM | ||
| CDS seq | atggccatgcatacaccaccgtgggaggagctccctgccgacgtccttaggatcgtcttctccagggtcgcatgccgtgcagaccgccaggtgatggccggggtctgcggggcttggcgccgcgccgtgaaggtgaaggtagcaacaggccagccgccacgcccgcgccagcttccctgtctgctgcgccccaacggtggtgattcctccgtctgctgcctgctctgctccggcggccacgggatcagcgtcgtccacgccgcccacctcccgcagcagcccgtcggcgcacgccacgcccgcttcttcgggtctcacgacggcagctgggcgttcctcgcctccgcccaaacaagcggccacgtccttcagaagttcggcaccgacaccatcatcccgctccccgacttcatggatgtgcagggaggagagagctcctccatcgtccacctcgccgcgacgctctcgcaccagccgggccacgccagttgcctcgtcgcggtgatcgtcaagacgtaccccatcgatgtcatgtctttgagagctgtcgcgttctggcgcatggaccatggcaccatggcctccgagctccacagaacagagatcgaggctatggagccagaggacatcatcttccacaagggcgtccttctcgtcctcacccagcaggagaatctactggcgtggatcccagagtacacggacgaggggcgtggagtcgagatgcacggaccggagcagcgcgcctgcggcaagcccaggatctacaacgaactggccgttcagtcacggtacctcgtggagtcccagaactgcctactgctgatcgtgagatacagggagggtcatcccacttcttccacccaagaactcaagatattccagctggtggagcttgagataccggatgagaacggtattatgatgacacgttacaattgggtagagctgttctctctgtttggcgagatgatcttccttgggcgaggctgctccagatcctacaatgtgtccaactacccgggcttcacagaaggcgtatacttcctggacgacgggagcttctaccatgctgacctcctgtcccatgacgctgccgaccagaattacacctgcagtgacaatgggaggtgggtgaacctccaggtcgaccgctgcttcccgccggagcaaagctgctcctgctctcctccgatttgggttctcccttga
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| Protein seq | MAMHTPPWEELPADVLRIVFSRVACRADRQVMAGVCGAWRRAVKVKVATGQPPRPRQLPCLLRPNGGDSSVCCLLCSGGHGISVVHAAHLPQQPVGARHARFFGSHDGSWAFLASAQTSGHVLQKFGTDTIIPLPDFMDVQGGESSSIVHLAATLSHQPGHASCLVAVIVKTYPIDVMSLRAVAFWRMDHGTMASELHRTEIEAMEPEDIIFHKGVLLVLTQQENLLAWIPEYTDEGRGVEMHGPEQRACGKPRIYNELAVQSRYLVESQNCLLLIVRYREGHPTSSTQELKIFQLVELEIPDENGIMMTRYNWVELFSLFGEMIFLGRGCSRSYNVSNYPGFTEGVYFLDDGSFYHADLLSHDAADQNYTCSDNGRWVNLQVDRCFPPEQSCSCSPPIWVLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0570350 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0570350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027520 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027300 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027320 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0367400 | SBH | 0.0381745 | 0.009957 | 0.011925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0378200 | SBH | 0 | 0 | 0.191032 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027270 | RBH | 0.0 | 0.0 | 0.0 |
