Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_05g0022371		OGI:05024990 \| 16/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr05:25076175-25076363		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		cactaatcaagggaaccttttgagggacacgatagcacatcaaatgtggaatgactatcgatagcataggaattagtgggctgtaataagtagtatatttgaTtttttttgatgttttgtgagctgtaataactacgacatattacaaatattatgttatgaatgaactatggtggttgcatgttacat
CDS seq		actaatcaagggaaccttttgagggacacgatagcacatcaaatgtggaatgactat
Protein seq		TNQGNLLRDTIAHQMWNDY
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_05g0022371	OsKeNa_05g0022371.01	Chr05	25076175	25076363	+	IsoSeq
CDS seq	actaatcaagggaaccttttgagggacacgatagcacatcaaatgtggaatgactat
Protein seq	TNQGNLLRDTIAHQMWNDY

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	4.804451	3.197232

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0595433	SBH	0.0	0.000000	0.0
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0595433	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_09G0120300	RBH	0	0	0.4995
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G021741	RBH	0.000000	6.086593	0.882880
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.