Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0020750 | OGI:05063740 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:23959055-23961689 | ||||||||
| Gene Symbol | PUB2, OsPUB2 | ||||||||||
| DNA seq | gcaaccatacaaatttttttctgagttccaattcgatttgttcgttcggttactgcaaaagaaagtcagcaacaaaatggccaacgcgaggaacgcggctgccgcgtcgccgccgccgccgtcgtcgtcttcttcgtattcctcgtcggcgtccgacggggagatcctccgatcgctgcaccgcctggcgagggatctggctgcggcggaggcgccggcgccgttcttggagacggtgttcgcggcggtgtccaggcgcgcgaagcttctcgccgcggtgttcgacgacctgctccggtgcgggaggctgccgcggtcggcgtcgctgtgcctgcgcgaggtgctgctcgtgctgcagcggttcaaggcggtggtggccgactgctcggcgcgcagccggatgcggctgctactgcaggccgacgaggtggcggcgcgggtgcgtgagctgcagcatgacctggccacgctgctggatcttctccccgttcccgagctcgggctcgccgacgacgtggtggacctcctcgcgctcgcgtcccggcagtgccggcggagctcgccgtcggcggacgccgcggagcacgagctgaagaccggggtgctggcgctgatccaggaggtggagagggagatcgtgccggagagggagaggctggagggcatcctcgaggaggttggcatcaacgacccggcgtgctgcagcgacgagatcgagacactggagcgggagatcggcgaccgcgtggcggagaggtggacgtcggccatgattgcgctcgttgggctcctccggtacgccaagtgcgtcctcttcaccgcggccacgccgcggccgatggacaccaaggtggatgttgacgacgatgacgatgacgacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctgatgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccggtggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggagcttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtcgccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaaggcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctccttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggcaacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctccactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacctgtccatcctcgacgccaacaagaagcgcatcatgcacgccgagggcgccgtcgaggcgatctgccacgccatgggctccggcgcgacgtggcgcgccaaggagaacgcggcggccaccgtgctcagcctggcgtccgtccattcctaccgccgccggcttggccggaacccacgcgtcgtcgagagggtcgtgcacctcgtgcgcaccggcccctccagcaccaagaaggacgcgatcgccgcgctcctgtgcctgtccggcgagagggagaacgtcgggaagctcgtggaagccggcgccgcggaggcggcgctgtcggcgatcagcgaggaggagaccgccgtggcggtgctggcgtcgctggccaagcgcggcggcgcggaggcgatcgtgaacatcgacggcgcggtggtgcgcctcgtggccgagctgcggcgcggcacggagtggtcaagggagtgcgcggccgccgcgctggtgctgctctgccgccgcgtgggcgccgccgtggtggcgcaggtgatgtcggtctccggcgtggagtgggcgatatgggagctgatggccaccggcacggagcgcgcgcggcgcaaggccgcgtcgctcggcagggcatgccggcgttgggccgcggcggagcaaaccgcggagtaccccgccacctccgacgtcacgacgacggccattacagcgtcgtgaaattccaccacggccacattgattaattcataggagcagataaaatttcgattttttttcccacgcacaacgaatgcttgtacaaaaaaaaaaattgtttcttgccttcaaggccttcacgattctttggttcatgggaccagtttgagtaattgataaactgcacatacaattatacaaagatccatttctctccaaatcttgtcacatatttctcttgtctcataagtaacacaaagagaaaaagagatgtcaccaacttgtacaaatgcttgtgaattgtgatcatctccacttcccccattctataattctttaatttctgtatccacatcgacgcaacaactgtacgatttcatttcattccagctaccaatatgaaagatgtgaacaaaagcatcacaataattgtgtagttgatggcttgcaactaggaggcgcccgtgatgagtgctcactcacttagttgcttgagctgccggggaccaaattgccagccattcccggccatccaatttggaggag
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| CDS seq | atggccaacgcgaggaacgcggctgccgcgtcgccgccgccgccgtcgtcgtcttcttcgtattcctcgtcggcgtccgacggggagatcctccgatcgctgcaccgcctggcgagggatctggctgcggcggaggcgccggcgccgttcttggagacggtgttcgcggcggtgtccaggcgcgcgaagcttctcgccgcggtgttcgacgacctgctccggtgcgggaggctgccgcggtcggcgtcgctgtgcctgcgcgaggtgctgctcgtgctgcagcggttcaaggcggtggtggccgactgctcggcgcgcagccggatgcggctgctactgcaggccgacgaggtggcggcgcgggtgcgtgagctgcagcatgacctggccacgctgctggatcttctccccgttcccgagctcgggctcgccgacgacgtggtggacctcctcgcgctcgcgtcccggcagtgccggcggagctcgccgtcggcggacgccgcggagcacgagctgaagaccggggtgctggcgctgatccaggaggtggagagggagatcgtgccggagagggagaggctggagggcatcctcgaggaggttggcatcaacgacccggcgtgctgcagcgacgagatcgagacactggagcgggagatcggcgaccgcgtggcggagaggtggacgtcggccatgattgcgctcgttgggctcctccggtacgccaagtgcgtcctcttcaccgcggccacgccgcggccgatggacaccaaggtggatgttgacgacgatgacgatgacgacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctgatgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccggtggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggagcttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtcgccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaaggcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctccttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggcaacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctccactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacctgtccatcctcgacgccaacaagaagcgcatcatgcacgccgagggcgccgtcgaggcgatctgccacgccatgggctccggcgcgacgtggcgcgccaaggagaacgcggcggccaccgtgctcagcctggcgtccgtccattcctaccgccgccggcttggccggaacccacgcgtcgtcgagagggtcgtgcacctcgtgcgcaccggcccctccagcaccaagaaggacgcgatcgccgcgctcctgtgcctgtccggcgagagggagaacgtcgggaagctcgtggaagccggcgccgcggaggcggcgctgtcggcgatcagcgaggaggagaccgccgtggcggtgctggcgtcgctggccaagcgcggcggcgcggaggcgatcgtgaacatcgacggcgcggtggtgcgcctcgtggccgagctgcggcgcggcacggagtggtcaagggagtgcgcggccgccgcgctggtgctgctctgccgccgcgtgggcgccgccgtggtggcgcaggtgatgtcggtctccggcgtggagtgggcgatatgggagctgatggccaccggcacggagcgcgcgcggcgcaaggccgcgtcgctcggcagggcatgccggcgttgggccgcggcggagcaaaccgcggagtaccccgccacctccgacgtcacgacgacggccattacagcgtcgtga
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| Protein seq | MANARNAAAASPPPPSSSSSYSSSASDGEILRSLHRLARDLAAAEAPAPFLETVFAAVSRRAKLLAAVFDDLLRCGRLPRSASLCLREVLLVLQRFKAVVADCSARSRMRLLLQADEVAARVRELQHDLATLLDLLPVPELGLADDVVDLLALASRQCRRSSPSADAAEHELKTGVLALIQEVEREIVPERERLEGILEEVGINDPACCSDEIETLEREIGDRVAERWTSAMIALVGLLRYAKCVLFTAATPRPMDTKVDVDDDDDDDDAEPPSPPPDFRCPISLDLMRDPVVSASGQTYDRESITRWFGSGKSTCPKTGQVLANLELVPNKALKNLISRWCRENGVAMESSEPSKPEPAPVVTANKAALEAARMTASFLVKKLSVSFSPAAANRVVHEIRQLARSGNDTRAFIGEAGAVPLLVPLLHSDDTATQLNAVTALLNLSILDANKKRIMHAEGAVEAICHAMGSGATWRAKENAAATVLSLASVHSYRRRLGRNPRVVERVVHLVRTGPSSTKKDAIAALLCLSGERENVGKLVEAGAAEAALSAISEEETAVAVLASLAKRGGAEAIVNIDGAVVRLVAELRRGTEWSRECAAAALVLLCRRVGAAVVAQVMSVSGVEWAIWELMATGTERARRKAASLGRACRRWAAAEQTAEYPATSDVTTTAITAS |
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| Function | U-box domain-containing protein 16 [UniProtKB/Swiss-Prot:Q9LZW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0020750 | OsKeNa_05g0020750.01 | Chr05 | 23959055 | 23961689 | + | NAM | ||
| CDS seq | atggccaacgcgaggaacgcggctgccgcgtcgccgccgccgccgtcgtcgtcttcttcgtattcctcgtcggcgtccgacggggagatcctccgatcgctgcaccgcctggcgagggatctggctgcggcggaggcgccggcgccgttcttggagacggtgttcgcggcggtgtccaggcgcgcgaagcttctcgccgcggtgttcgacgacctgctccggtgcgggaggctgccgcggtcggcgtcgctgtgcctgcgcgaggtgctgctcgtgctgcagcggttcaaggcggtggtggccgactgctcggcgcgcagccggatgcggctgctactgcaggccgacgaggtggcggcgcgggtgcgtgagctgcagcatgacctggccacgctgctggatcttctccccgttcccgagctcgggctcgccgacgacgtggtggacctcctcgcgctcgcgtcccggcagtgccggcggagctcgccgtcggcggacgccgcggagcacgagctgaagaccggggtgctggcgctgatccaggaggtggagagggagatcgtgccggagagggagaggctggagggcatcctcgaggaggttggcatcaacgacccggcgtgctgcagcgacgagatcgagacactggagcgggagatcggcgaccgcgtggcggagaggtggacgtcggccatgattgcgctcgttgggctcctccggtacgccaagtgcgtcctcttcaccgcggccacgccgcggccgatggacaccaaggtggatgttgacgacgatgacgatgacgacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctgatgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccggtggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggagcttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtcgccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaaggcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctccttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggcaacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctccactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacctgtccatcctcgacgccaacaagaagcgcatcatgcacgccgagggcgccgtcgaggcgatctgccacgccatgggctccggcgcgacgtggcgcgccaaggagaacgcggcggccaccgtgctcagcctggcgtccgtccattcctaccgccgccggcttggccggaacccacgcgtcgtcgagagggtcgtgcacctcgtgcgcaccggcccctccagcaccaagaaggacgcgatcgccgcgctcctgtgcctgtccggcgagagggagaacgtcgggaagctcgtggaagccggcgccgcggaggcggcgctgtcggcgatcagcgaggaggagaccgccgtggcggtgctggcgtcgctggccaagcgcggcggcgcggaggcgatcgtgaacatcgacggcgcggtggtgcgcctcgtggccgagctgcggcgcggcacggagtggtcaagggagtgcgcggccgccgcgctggtgctgctctgccgccgcgtgggcgccgccgtggtggcgcaggtgatgtcggtctccggcgtggagtgggcgatatgggagctgatggccaccggcacggagcgcgcgcggcgcaaggccgcgtcgctcggcagggcatgccggcgttgggccgcggcggagcaaaccgcggagtaccccgccacctccgacgtcacgacgacggccattacagcgtcgtga
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| Protein seq | MANARNAAAASPPPPSSSSSYSSSASDGEILRSLHRLARDLAAAEAPAPFLETVFAAVSRRAKLLAAVFDDLLRCGRLPRSASLCLREVLLVLQRFKAVVADCSARSRMRLLLQADEVAARVRELQHDLATLLDLLPVPELGLADDVVDLLALASRQCRRSSPSADAAEHELKTGVLALIQEVEREIVPERERLEGILEEVGINDPACCSDEIETLEREIGDRVAERWTSAMIALVGLLRYAKCVLFTAATPRPMDTKVDVDDDDDDDDAEPPSPPPDFRCPISLDLMRDPVVSASGQTYDRESITRWFGSGKSTCPKTGQVLANLELVPNKALKNLISRWCRENGVAMESSEPSKPEPAPVVTANKAALEAARMTASFLVKKLSVSFSPAAANRVVHEIRQLARSGNDTRAFIGEAGAVPLLVPLLHSDDTATQLNAVTALLNLSILDANKKRIMHAEGAVEAICHAMGSGATWRAKENAAATVLSLASVHSYRRRLGRNPRVVERVVHLVRTGPSSTKKDAIAALLCLSGERENVGKLVEAGAAEAALSAISEEETAVAVLASLAKRGGAEAIVNIDGAVVRLVAELRRGTEWSRECAAAALVLLCRRVGAAVVAQVMSVSGVEWAIWELMATGTERARRKAASLGRACRRWAAAEQTAEYPATSDVTTTAITAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048753 | 3.673114 | 0.901272 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0476700 | RBH | 0.819224 | 0.836327 | 1.960209 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39930 | RBH | 0.564139 | 0.511655 | 0.458985 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0476700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020800 | RBH | 0.0 | 7.594383 | 3.113774 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038060 | RBH | 0.142705 | 6.036013 | 1.144712 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020630 | RBH | 0.239212 | 11.842539 | 1.255522 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020630 | RBH | 0.081164 | 0.302809 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020730 | RBH | 0.395964 | 5.897133 | 1.715100 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0363000 | RBH | 11.507787 | 176.2368015 | 3.4266245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020330 | RBH | 0.036747 | 0.881901 | 0.294486 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0372400 | RBH | 14.022001 | 89.2869555 | 3.5098265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020580 | RBH | 0.026880 | 0.230742 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020550 | RBH | 0.0 | 9.141011 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020640 | RBH | 0.976201 | 14.505519 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020710 | RBH | 0.069926 | 0.587768 | 0.827060 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020710 | RBH | 0.297810 | 6.359908 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020170 | RBH | 0.0 | 1.361808 | 0.543302 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020610 | RBH | 0.363895 | 3.026833 | 4.145353 |
