Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0018410 | OGI:05057770 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:21855955-21859138 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acgcaagaaacgtttaatggacaggtaagatgtgaacaatcaaaattccaaactgccagaatcgcaagcattccctatacagcagtcggccggcagcaaactatgtcaatccacagtacatagagcgttcaacagcatgaatggaaggcaaatgcaaccaaccacagctaccaccacactcgcacaaaatttacgcaccaaccgatcaacacgaatagcacaaccagagcaaacgacacggacAaaaaaaaaacaggttacagcgctagctagagccctgatgaggccatcgatcaagtgagacctatctcaagctctcgtgcaatctggatggcgtactggcagctgtggtggtgttgccctcgtcgcccgactccgtcaccggcttcgcatatgttcttgttctgtccagtgggctcgcccgcggagtccgacgatcctgcagtgtggacaggcaaaagacaggtgaattttaaggtgtcaagaatactgctctgtttcaggcatgaagtccaagtttctgaatcttctgatggcatgtaaaacgacagaatacaggttgacatagaacagtagaaacatgctaattttgttcagaataaataattcattggcatctttgtgaactactaaataatatgcaggtcgtgctgattgtaccaactaggggaataaattagttaatcaagagcaatagtaatcaagtctgacgtggtgatctcgaggccattaatactctttttcgggatgacagtgtaattaacatctcgtagagaagttcagagcacagtcaggtaacatggcagtaacataatttgatctcgacaaggctgcaaagaacagtcgaccgagggtcagacatggagcttgcaatcagagccaacagtgtcctattttaatcctgatacccctgccttgtccatttcttaaaactgaaatgcagacgcgccaccattttaatgtcagcaaacatttgcatagattagattaatcgagcaaatattttagcatcttatcacggtaacccgacaattgcgtggattccatcttatgtaacttgggattagttaccatgcacatatagtatgatctgaagagcaaatgagcaaatatgattgacttcagagagatgcaaagaacaagaaggctcacttctcggtatgggaagtcatcgacttcgagcatatggatgacatgccccatctttggccgcttctgcgagtcgggatccacacacctcagagcaaccaagagagccttcttcagtgccttggaggtaggcttctctggcaattttgggtccagaacagcttcatagtcccggttgctcaccatattcttgagccactctactaggttaacctgaaatgcacccacagaaattaaggccaagaagcacattgtacacacaacataagcttgtttcagtattcaaccagatgaagagccaacctctcctggagcccttgcgtaatcgaccgggcttcgaccggagatgatttccattatcaggatcccgaagctgtacacatcgcttctctcattcagcatcccggtgctcgcgtactccggtgctacataactgcaaatgcagaatcgatggccagagagaccttagtgttcagtgctcacatcttacatttcaccgggctcgacacaattgagaacctcacatccatcttacccaaatgttcccatgactctcgtggtaacatagttgttgtctgaaccgaggagcttggcgaggccaaagtccgagaccttggggttccatctcttgtccagcagtatgttgctcgacttgatgtcccggtgcaccaccttcggctccagcccctcgtgcaaatatgtgatcctgaaccatgtcaacccccaaaattgagatatatcacacaatttcacaaaaaaaaaaacaatcaaaagctgcaaattaagaagatgcatcaatgcatgacgagaaaatcggaagcattgatgatagttcacccaccctttcgctgtcccaagcacgatgttcatcctgatgtcccaagacagagggctaaccggtccaacgtcgccatgaagccactgctccaagttgccattgtccacgtactcatacacaagtatcctgagatcacaggcaagaaatggtaggatcggagtaggtaggtaggaatgatctggtaagagaacagccaaaaaaaggaaagaaaaaaaagaaggcggcgatttggcaattgcgtggtgtgtgtagtgtaccggtgagctccctccgcgcagtagccgagcaacctgacgagattcttgtggcggacgcggccgattgcctccacctccaccttgaactccctctccgcctgacccctgccgcgagcagcagcagcagcaacaacaaagtgtgtgagatgtttttgtcagcaacggacggggccaaaataatggcaatggcacatggcgagaaaagatgcgatctctgcggcgcgcacctgttgttgaggagattcttgacggcgacctcgcagccgtcggcgaggacgccgcggtagacgatgccgtagccgccctcgccgacgacatgctcgggtgcgaaggcggcggtggcctcctccagctcacggagcgtgtaccagtggccccacccgaggtgcgacacctcgggccccacccccacccccaccgccgcctgcgccgacgccgccaggtcggacgccaccgggcccacctcaccgtcggcgtacgccaccatgcggcggcccttgccggcctcgatgtgcacgcgctgcgacccgtacacggtggagccacccagcgagtcaccgtcgaccaccgcgccgccgacgccgccgccttccttgaggaacgtggcgccggcctcgaggtagtggcggagggagccgacgtggacggccacctcctggatctccttcgacacgggcgggatggtggccggcgacagcggcaccgccgcgccccccggcgccgccgccgccgccgcggcggaggacgcccgcttcgcggccggcttccgccgccgggcctgcgcgaggtggaacgagatgactgcgaggagcagcaggaacgcggcccccaccgcgatgccgacgagcacccacagccgcagccccagcaccgccgtcctcctcgacagctcgttcctcagcaccggcggcgccctcgccgccgccggcggcggcgacat
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| CDS seq | atgtcgccgccgccggcggcggcgagggcgccgccggtgctgaggaacgagctgtcgaggaggacggcggtgctggggctgcggctgtgggtgctcgtcggcatcgcggtgggggccgcgttcctgctgctcctcgcagtcatctcgttccacctcgcgcaggcccggcggcggaagccggccgcgaagcgggcgtcctccgccgcggcggcggcggcggcgccggggggcgcggcggtgccgctgtcgccggccaccatcccgcccgtgtcgaaggagatccaggaggtggccgtccacgtcggctccctccgccactacctcgaggccggcgccacgttcctcaaggaaggcggcggcgtcggcggcgcggtggtcgacggtgactcgctgggtggctccaccgtgtacgggtcgcagcgcgtgcacatcgaggccggcaagggccgccgcatggtggcgtacgccgacggtgaggtgggcccggtggcgtccgacctggcggcgtcggcgcaggcggcggtgggggtgggggtggggcccgaggtgtcgcacctcgggtggggccactggtacacgctccgtgagctggaggaggccaccgccgccttcgcacccgagcatgtcgtcggcgagggcggctacggcatcgtctaccgcggcgtcctcgccgacggctgcgaggtcgccgtcaagaatctcctcaacaacaggggtcaggcggagagggagttcaaggtggaggtggaggcaatcggccgcgtccgccacaagaatctcgtcaggttgctcggctactgcgcggagggagctcaccggatacttgtgtatgagtacgtggacaatggcaacttggagcagtggcttcatggcgacgttggaccggttagccctctgtcttgggacatcaggatgaacatcgtgcttgggacagcgaaagggatcacatatttgcacgaggggctggagccgaaggtggtgcaccgggacatcaagtcgagcaacatactgctggacaagagatggaaccccaaggtctcggactttggcctcgccaagctcctcggttcagacaacaactatgttaccacgagagtcatgggaacatttggttatgtagcaccggagtacgcgagcaccgggatgctgaatgagagaagcgatgtgtacagcttcgggatcctgataatggaaatcatctccggtcgaagcccggtcgattacgcaagggctccaggagaggttaacctagtagagtggctcaagaatatggtgagcaaccgggactatgaagctgttctggacccaaaattgccagagaagcctacctccaaggcactgaagaaggctctcttggttgctctgaggtgtgtggatcccgactcgcagaagcggccaaagatggggcatgtcatccatatgctcgaagtcgatgacttcccataccgagaagatcgtcggactccgcgggcgagcccactggacagaacaagaacatatgcgaagccggtgacggagtcgggcgacgagggcaacaccaccacagctgccagtacgccatccagattgcacgagagcttgagatag
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| Protein seq | MSPPPAAARAPPVLRNELSRRTAVLGLRLWVLVGIAVGAAFLLLLAVISFHLAQARRRKPAAKRASSAAAAAAAPGGAAVPLSPATIPPVSKEIQEVAVHVGSLRHYLEAGATFLKEGGGVGGAVVDGDSLGGSTVYGSQRVHIEAGKGRRMVAYADGEVGPVASDLAASAQAAVGVGVGPEVSHLGWGHWYTLRELEEATAAFAPEHVVGEGGYGIVYRGVLADGCEVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYVDNGNLEQWLHGDVGPVSPLSWDIRMNIVLGTAKGITYLHEGLEPKVVHRDIKSSNILLDKRWNPKVSDFGLAKLLGSDNNYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEIISGRSPVDYARAPGEVNLVEWLKNMVSNRDYEAVLDPKLPEKPTSKALKKALLVALRCVDPDSQKRPKMGHVIHMLEVDDFPYREDRRTPRASPLDRTRTYAKPVTESGDEGNTTTAASTPSRLHESLR |
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| Function | Probable serine/threonine-protein kinase At1g01540 [UniProtKB/Swiss-Prot:Q3EDL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0018410 | OsKeNa_05g0018410.01 | Chr05 | 21855955 | 21859138 | - | NAM | ||
| CDS seq | atgtcgccgccgccggcggcggcgagggcgccgccggtgctgaggaacgagctgtcgaggaggacggcggtgctggggctgcggctgtgggtgctcgtcggcatcgcggtgggggccgcgttcctgctgctcctcgcagtcatctcgttccacctcgcgcaggcccggcggcggaagccggccgcgaagcgggcgtcctccgccgcggcggcggcggcggcgccggggggcgcggcggtgccgctgtcgccggccaccatcccgcccgtgtcgaaggagatccaggaggtggccgtccacgtcggctccctccgccactacctcgaggccggcgccacgttcctcaaggaaggcggcggcgtcggcggcgcggtggtcgacggtgactcgctgggtggctccaccgtgtacgggtcgcagcgcgtgcacatcgaggccggcaagggccgccgcatggtggcgtacgccgacggtgaggtgggcccggtggcgtccgacctggcggcgtcggcgcaggcggcggtgggggtgggggtggggcccgaggtgtcgcacctcgggtggggccactggtacacgctccgtgagctggaggaggccaccgccgccttcgcacccgagcatgtcgtcggcgagggcggctacggcatcgtctaccgcggcgtcctcgccgacggctgcgaggtcgccgtcaagaatctcctcaacaacaggggtcaggcggagagggagttcaaggtggaggtggaggcaatcggccgcgtccgccacaagaatctcgtcaggttgctcggctactgcgcggagggagctcaccggatacttgtgtatgagtacgtggacaatggcaacttggagcagtggcttcatggcgacgttggaccggttagccctctgtcttgggacatcaggatgaacatcgtgcttgggacagcgaaagggatcacatatttgcacgaggggctggagccgaaggtggtgcaccgggacatcaagtcgagcaacatactgctggacaagagatggaaccccaaggtctcggactttggcctcgccaagctcctcggttcagacaacaactatgttaccacgagagtcatgggaacatttggttatgtagcaccggagtacgcgagcaccgggatgctgaatgagagaagcgatgtgtacagcttcgggatcctgataatggaaatcatctccggtcgaagcccggtcgattacgcaagggctccaggagaggttaacctagtagagtggctcaagaatatggtgagcaaccgggactatgaagctgttctggacccaaaattgccagagaagcctacctccaaggcactgaagaaggctctcttggttgctctgaggtgtgtggatcccgactcgcagaagcggccaaagatggggcatgtcatccatatgctcgaagtcgatgacttcccataccgagaagatcgtcggactccgcgggcgagcccactggacagaacaagaacatatgcgaagccggtgacggagtcgggcgacgagggcaacaccaccacagctgccagtacgccatccagattgcacgagagcttgagatag
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| Protein seq | MSPPPAAARAPPVLRNELSRRTAVLGLRLWVLVGIAVGAAFLLLLAVISFHLAQARRRKPAAKRASSAAAAAAAPGGAAVPLSPATIPPVSKEIQEVAVHVGSLRHYLEAGATFLKEGGGVGGAVVDGDSLGGSTVYGSQRVHIEAGKGRRMVAYADGEVGPVASDLAASAQAAVGVGVGPEVSHLGWGHWYTLRELEEATAAFAPEHVVGEGGYGIVYRGVLADGCEVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYVDNGNLEQWLHGDVGPVSPLSWDIRMNIVLGTAKGITYLHEGLEPKVVHRDIKSSNILLDKRWNPKVSDFGLAKLLGSDNNYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEIISGRSPVDYARAPGEVNLVEWLKNMVSNRDYEAVLDPKLPEKPTSKALKKALLVALRCVDPDSQKRPKMGHVIHMLEVDDFPYREDRRTPRASPLDRTRTYAKPVTESGDEGNTTTAASTPSRLHESLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.968289 | 0.337432 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0436100 | RBH | 0.0 | 0.0 | 6.671132 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36050 | RBH | 0.0 | 0.0 | 1.407525 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0436100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018440 | RBH | 0.0 | 0.0 | 5.587309 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037480 | SBH | 0.034916 | 1.535580 | 0.504719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018270 | RBH | 0.0 | 9.027039 | 7.316246 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018290 | RBH | 0.0 | 0.623969 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018520 | RBH | 0.0 | 37.944881 | 8.443730 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0328200 | RBH | 7.7316425 | 2.051381 | 3.741922 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018040 | RBH | 0.0 | 0.837345 | 0.124788 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0339800 | RBH | 7.580528 | 0.115472 | 20.171382 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018340 | RBH | 0.0 | 0.255005 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018280 | RBH | 0.0 | 12.702774 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018410 | RBH | 0.0 | 16.425009 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018460 | RBH | 0.0 | 0.252622 | 0.179208 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018460 | RBH | 0.0 | 3.447960 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017970 | RBH | 0.0 | 3.344410 | 7.931991 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018250 | RBH | 0.0 | 4.051851 | 1.605062 |
