Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0008600 | OGI:05022940 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:8531907-8540177 | ||||||||
| Gene Symbol | OsWD40-115 | ||||||||||
| DNA seq | aaaaagggaaatacctaacattaatttaaacttattttggtagacctgtttttaaacaaaataacaagcatgcccgcgcattcacgcgggctacctttccagtttgctttctagtttgtagtaagtacttcttcccttgatgaaatttggtctgctttcttaaccggctggcgaaaaaaataatctatcaccataggccaagcaagtattgccatccagcctgccaaccgtattgagcaccctgtccacacatcatccgctgtcaccaaaacgcccctgctgaattgaattgctgatgatatcatcgggtgtgtccaacggctccagcacatgaactgcaccatcgctcatgccgactgcaaactggttaggcttccagggatgcgcagcgacaaccatgggatacacaatttcaccaccgctggagttgataagatgaaacaagagggcagcattaacaggtcaccagcattaaaattaccagactcgaaacaaaaacagaattaaactgttggagttggacactgcatatacctagaaactgaagatggtatataggcagaaggtgcaatcctgcactgtaacatgagagattccacttgaaatattccaattgcaccatcacagaatccagcgtagatcaataagccatccgatgagtatactgcactcgaaactggagcagagagtggatcacttgggaaccactgcacattgtcaatcaatgaaaggttaaatatcagtgatgattacaatatattgtgaaggttaggagcatcataaatatttatctcactgctagcatgatgtaacatgtttactcaagaccgaatcaagactgcatatagcaagtgatagatgcaaatacattgatatataaattttgtgaacaacttactgagcacaagcattctagctcctcatcgtagatcgccaattggctctcatgaactactaaaaggcgcttttggtcatagtgaaactgcaccattatatcaccaactaaagctccagaatgattagatggaggttggatatatctggatttcttcttcgcccaatcttccatactccaaacacatagctgcaaattccatttcattgcacacacaaaaaaaaatgattcagaaaaaaacaagtataatatacgtagttttccatgcaatcaagcatgtaaTtttttttaatttcttatcttttggaaaatggactaaagaatggcctgaaatgggactcatataaatatggattttgaagctatgcttatatgcaccgagcttacatttaactcagcatccattcaataaacaacaaaattgccagtccaaaaatctttgatatatattagaatttacacctgagaatcagcacctgaagatacaagcacattcattgatagcgagaataccagtccagttatctttttctgatggcccttgagcacccatttaacctgtgcaattcgattaagataagtcaataTtttgtcatgttgctgccaaatataaacaaacggtaattagtatattaagtataggactccacataggaagaaccgaacaatcaattaccattgttgggaaaattgactctcggcatgaaaactttgaggcaattgcgcactgccgttttccacccattgccgcgtgattaacatgttttaactcatgattattaccataattatgcaatcacgtgcattgattggtagcgcccaaaaccttatgtttttggaaagcccccgattCccctcagtgcaaaataaaatgggaggccgaccctagaggaaggtgacaactttttctctcggtctcaaatctcaccaacacaaaaataacgtaatcccgatcaagctaaaccgctggaggggaaacatggtacagtccaggccgatgcaggtggaggccggaggacgctgccagcctgccacatcatctctgcttaaactactacgccgccaacgaacaccagagcagttcaagagactccatcctcttctttcactccggttccaagagaggaaatcgcaacaagtgcaatggcttcaaacaatggttagcgcccctaatattccgcattaggtgatcttttaggcttagcatattatgaatcttaagtagattatgaaatctacaatcattatgacttcccatatcttcaaatgtcgagctgacaatatatgaggtttttgggtcatactgggtaccactttcttcatactgttgccaagagataccacaaaatagctatagaatgcgtgtaccttgtggtatctcctcaaagaccataaaaggctcacaatttattatgtaaaaaagaacatatgtaaaacaacatttagaatctcaccagatcctgatacataagtaaaagatgaggagatatatagtctgaaacgagaacatattatttcacaatgggtactgcacttccagtgggaatcatagatagtgagttttgccaatacttttgagatttatgcaaacaggggacaagagatgcacggctaacactcacctcgtcaacacggatattgtagagtagaatcgaagagtcatccgttccaatagctatgatgttattgtcatgcgggtggaatgcgaggaaagttgcagagggtggaggtgctatgaaagtagtcatggtctgtgagtgattccacaaaatcagttaagtaaaagaaaggccatgatcgatgcaactatgaaataaaaaatattttccggaagtagtcatgacctgtgagagatcaatcatgaaattaccagattattgtgttacatgactgaagaagacataccttgaaatttaacatgttgaacaacgaaactttgccaccagatgcagaaattagatagcagtcatttttggatagtagactgcaggcagctgcttcttcagggttgccattagcagtgtcattcattagaatgtcactttccggttgccacacttgaggtgggacagatgtggtggactaacaaaaagtagtgatggttttaagaaaacaaccaaacagaactgcgctgttgaaatcaaaataatttagttctcctgtctaaccatgccagcaggattcttgtcattgctctcccatttccacagcttatgaacagcatttgagctgagagctaaaagtcccttcccactttttctataaagcagacagataacctataaagaaaagaaataaaacacaatgcttatcagaattgtataccgatctgaatattctagtgaactgccagaattgtataccgctctgaatacagcttataagttataccactatcgctttgaattctagtgtgctacatcacaaaaatgagaaatcacatccaatgtcaatatcaacaaatatagacgcttgtgaaatatttacatgcaaatatcaacagatactgtgatcttccttgcattaaatagaatgtaaggtcctatgtttcaggttgataacttgatatttcatggtcaacgtactaatacgaaaagatgcacgtgcaaacatcgctgaacatactttgcttgaagatgcttctgtaactggcatacgcagtgctcgaatacggccagagctaacaatgttcgccttccaggcctcatttaccaactccggggttctgctcacatgcatatatgcctgcattttcaatacaattagcaaataatattgaacagcaaacgaacaagaaagtgcagcaaactcagctggccactcatgagttcctggctataactacagtacacacattccaaatggaaccaagggcattcacaatcaggggctgcatggtaaaaaaaacagtggttatttttcctctttctcccagtttcttcatccaacggccaaccaagctcaacagcagcAacggtcttcctgtggcaggacacggcagtagatgggtgtcgaagcatctccacgtcatgaagaaatctgcagtgaaatgaattggcacagaggacagtgatggtggggagacgtcaaccagtactagagaacacagtcaagccagagatactcagagttttcaatttcggaaattgttattctgtgggagagaacaataactgaggcatcagccaagttagaaacaTttgcatggtggtgtatctctgaggaatcggcccggcacccactgacagtttaaaccgatggagtcactaccaggtcaccagtgcacacttgctactgcaggctaaagtagcatacctccggtttgctcgctcatgtgtatattgattcacgagaacgtgaactcaaatcaagaaggaataagtttaaggaccattggtaacttaactcgaatataaacatggtgcaactagtagcataggccctcaagaggcctgtacctcataaagatattgtaatcaaattgaaggccaaacatgcatctaggtacgttttttgcaatatcaaatgatagacaggacatgaatttttctactcgtataaaagaagggaaaggaatggatataggactaattaaaagaagagaaactagaagtggctagattcgactcctagtttgtgaggcataatataggggaagtaattacctttactacaaaaagcaacatgggaatgaattaataagatgaaccaacgttggtctatcaatgtgcatgcatgatcagttcctacctcttggtagggtgagagcacagcttgttcgtcttgccatttggtttgaacagttgggtgtttgggatggaccgcagctgagttcatcaatgcagcagccacttcctccacctctgacagacgggcatctccacatttcagtactatggtgactttctggagcgaacttcttccaagcttctcgaagctaagcagcttgtcaaaaccaagctgggttgcatctttcaggaaccgcatatggacagcaaactcgaggaattcaagacttggcatgataatagatgctaagcttctattgtctgtgatgttgcacttgctgccgtgcagatcaaaccagatagatgtaccaagtatccttaagattctcaacttccgaaagtagccaacatcttcagtatgaatctttatgctaaccaattcggtctcatgcaaacgcagcacaaggcagcggagctctggcaacctcgcaagggtttccatgtcctgctctttcacaattagcacaaccacatccagacaggagaggttcggagcaagcgatgatttaatccatgctggcagtccagagaacacaaagcaattcagacacaggtatcggagatgcaggcaggagacagatcttgcactgcttgtcactctccttgtcactaggggtgggccctcaatgtgcaggtcccggatattgtgcagcttgcttagggattccaacaaagctctctccatgctctcattcaaatcctcaaaataagtccggagcacccttagttccctcagtaggcccagctcattcacaaacttcatcgtagacttcgtagtatcatcaacagcagcagcatcatcatcatcatcaacagaagcagcatcgtcatcataaacagcagcagcaggctctatccaaagctcttgcaatgaggtcaacttaccgatcaaaccaatcttcaccattatttcccaatcagctcgtaggcaaacaagttgtgtcagcagtcccacctcctctggcagctcctttatgcgacttccccttaaatccagtgtctgcagaaacttgagataccttacttccctgggcagcttagtgatatatgtatctactaacccgaggtacctcaggtgaagtaaactcccaagatggcttggcatagttttgtccctatcttccaaaacattaggcgtctcactttctgcacagtttatcacatctaatacacgtaaaaccggagtgtgtaggcataatgaaccgaagcactgactggcaataagggatctcacattcttcagagtgatattagctagctgaccatccttgtgcactagaacacgctgcagggctaacctgcgagcaatgctccccggaagtttctgtcgctcatcaccattcaatacagtgacaaaattttcttcactcgataatgagtggatcatatcaagaaccatatcatgaacgcagcaaccatctacatacccttcatgttttgtctccactggctggatcatgcttctatttatcaactcattgaagcacctctccccgagctcaaataatcctaaccctgctgctagttcctcatggatgaaaccttcagctatccacttccatatcaaactatttttctctatcacatgatcttcgggaaatacacatagatacaataagcaatcttttaaatgtgaagacagatcatagtagctaaaagacaatatccttctagtattacctacatcatcattgtcttcatgcccaaaaccgacagagttgtagacctcagaccagtcctCccctggtttactgaccaacaaactagctattgtaatgatagctaatggtacaccaccacatttcttcaaaattttttcacatgccttagctgatggattatcgaaatacttccattcaccatcaactattcttgcatacaataatttttcagagttatcacgagaaagtggctgaattttgtaagcttcaccagcatgtgtggcaacttcagaaatacgagtagttatgacaagtctacttccacaatcactttcttgcagagcacatctgattaatttccatgactccttgtcccatatatcatcaataacaatgaaacacctatgtcatgattggatagaagtatcagagcaggaggaaaaccagtgcagttcaaagttaatcttggttcagtcagagttaggggtcagaatcaaattcagttaaaattgagtttagagtttgaatctgatttggctaagttctttgaagtttgttcagactacaattcagttagtattggagtcggtttgaattgggcttggctatattagctggttgtacatcatgaattgaatcatgcacttatatttttgcaggataactgacatgtacttacatctccaatgtttgtatgtgatgtatgtcttgtgcttagtgctaaaatacaactgcatgttgttatataaatataatttgcagtagctctaacaaataaccagttaacctacatcattaatttattatatagcttgggcctaccaaaatcgacatgatgaatgtctctcttttctcattaatgtggttgttttttgcaactcttgggagcaaatgagcttgatatgtttaaatttgtttgaataatatgactagcatgattttcttgcgattgcgtggctagataataaattaataatactcatttgtatgagaaaatatatctgaatattatacaactgtttttgcttgctgaaaacacatttacaTttttatgcatgactgtattaaatcaatctgcatcgattagcgttgtactattttctagacttgagatgtaaaatgtgctcctttcatcctttatttaataaagtaaatagatataaggaaggaattgtacagatactggaattcaaagtcacaacgtaagcagtgagtcattggattggtgattacactcatacctcttctccttgacgaattccttgagttcgtccatgagctgcttttcatccaacaccatcatattcggattcgtgtacttttccttgtcaagatcaatgagaatgtctctaaagactttcttcatgtcaggattccgacccactggaacaaaagctccgcattcgaaatgcggttcaacctggtcatcgaatgctttattcatgtcaggattctggtcgactggaacagaagccctgcacttgaaatgcggtttgaagtggtcatagacagctttggcaagagtggtcttgccgagtcctccaaatccaacgacagagatgactttcatcttcttgtcggacacatcaacatcaccccccagggatagcttgtttatgagatcgtcccttggcccgtcaatgccaacaagctctgttgcccttttgtacagattctggagacgaggatcgatggtcgttgccgctagagacttgaggacaacgctgtcgactgtgtacttgacatgccttgctttcacctgctcgaacttcttgttaatgtcttggatcaggttagagatcttacggcgagccttgctcttcttgaacagcttgcctaacttcttccggaggcgcaggagcatgtgtggatcggtggggtcagggccatcgtcgtgcaccaagaatgtgtcgacgatgtcctccat
More
|
||||||||||
| CDS seq | atggaggacatcgtcgacacattcttggtgcacgacgatggccctgaccccaccgatccacacatgctcctgcgcctccggaagaagttaggcaagctgttcaagaagagcaaggctcgccgtaagatctctaacctgatccaagacattaacaagaagttcgagcaggtgaaagcaaggcatgtcaagtacacagtcgacagcgttgtcctcaagtctctagcggcaacgaccatcgatcctcgtctccagaatctgtacaaaagggcaacagagcttgttggcattgacgggccaagggacgatctcataaacaagctatccctggggggtgatgttgatgtgtccgacaagaagatgaaagtcatctctgtcgttggatttggaggactcggcaagaccactcttgccaaagctgtctatgaccacttcaaaccgcatttcaagtgcagggcttctgttccagtcgaccagaatcctgacatgaataaagcattcgatgaccaggttgaaccgcatttcgaatgcggagcttttgttccagtgggtcggaatcctgacatgaagaaagtctttagagacattctcattgatcttgacaaggaaaagtacacgaatccgaatatgatggtgttggatgaaaagcagctcatggacgaactcaaggaattcgtcaaggagaagaggtgtttcattgttattgatgatatatgggacaaggagtcatggaaattaatcagatgtgctctgcaagaaagtgattgtggaagtagacttgtcataactactcgtatttctgaagttgccacacatgctggtgaagcttacaaaattcagccactttctcgtgataactctgaaaaattattgtatgcaagaatagttgatggtgaatggaagtatttcgataatccatcagctaaggcatgtgaaaaaattttgaagaaatgtggtggtgtaccattagctatcattacaatagctagtttgttggtcagtaaaccagggGaggactggtctgaggtctacaactctgtcggttttgggcatgaagacaatgatgatgtaggtaatactagaaggatattgtcttttagctactatgatctgtcttcacatttaaaagattgcttattgtatctatgtgtatttcccgaagatcatgtgatagagaaaaatagtttgatatggaagtggatagctgaaggtttcatccatgaggaactagcagcagggttaggattatttgagctcggggagaggtgcttcaatgagttgataaatagaagcatgatccagccagtggagacaaaacatgaagggtatgtagatggttgctgcgttcatgatatggttcttgatatgatccactcattatcgagtgaagaaaattttgtcactgtattgaatggtgatgagcgacagaaacttccggggagcattgctcgcaggttagccctgcagcgtgttctagtgcacaaggatggtcagctagctaatatcactctgaagaatgtgagatcccttattgccagtcagtgcttcggttcattatgcctacacactccggttttacgtgtattagatgtgataaactgtgcagaaagtgagacgcctaatgttttggaagatagggacaaaactatgccaagccatcttgggagtttacttcacctgaggtacctcgggttagtagatacatatatcactaagctgcccagggaagtaaggtatctcaagtttctgcagacactggatttaaggggaagtcgcataaaggagctgccagaggaggtgggactgctgacacaacttgtttgcctacgagctgattgggaaataatggtgaagattggtttgatcggtaagttgacctcattgcaagagctttggatagagcctgctgctgctgtttatgatgacgatgctgcttctgttgatgatgatgatgatgctgctgctgttgatgatactacgaagtctacgatgaagtttgtgaatgagctgggcctactgagggaactaagggtgctccggacttattttgaggatttgaatgagagcatggagagagctttgttggaatccctaagcaagctgcacaatatccgggacctgcacattgagggcccacccctagtgacaaggagagtgacaagcagtgcaagatctgtctcctgcctgcatctccgatacctgtgtctgaattgctttgtgttctctggactgccagcatggattaaatcatcgcttgctccgaacctctcctgtctggatgtggttgtgctaattgtgaaagagcaggacatggaaacccttgcgaggttgccagagctccgctgccttgtgctgcgtttgcatgagaccgaattggttagcataaagattcatactgaagatgttggctactttcggaagttgagaatcttaaggatacttggtacatctatctggtttgatctgcacggcagcaagtgcaacatcacagacaatagaagcttagcatctattatcatgccaagtcttgaattcctcgagtttgctgtccatatgcggttcctgaaagatgcaacccagcttggttttgacaagctgcttagcttcgagaagcttggaagaagttcgctccagaaagtcaccatagtactgaaatgtggagatgcccgtctgtcagaggtggaggaagtggctgctgcattgatgaactcagctgcggtccatcccaaacacccaactgttcaaaccaaatggcaagacgaacaagctgtgctctcaccctaccaagaggcatatatgcatgtgagcagaaccccggagttggtaaatgaggcctggaaggcgaacattgttagctctggccgtattcgagcactgcgtatgccagttacagaagcatcttcaagcaaagttatctgtctgctttatagaaaaagtgggaagggacttttagctctcagctcaaatgctgttcataagctgtggaaatgggagagcaatgacaagaatcctgctggcatgtccaccacatctgtcccacctcaagtgtggcaaccggaaagtgacattctaatgaatgacactgctaatggcaaccctgaagaagcagctgcctgcagtctactatccaaaaatgactgctatctaatttctgcatctggtggcaaagtttcgttgttcaacatgttaaatttcaagaccatgactactttcatagcacctccaccctctgcaactttcctcgcattccacccgcatgacaataacatcatagctattggaacggatgactcttcgattctactctacaatatccgtgttgacgaggtgagtgttagccgtgcatctcttgtcccctgtttgcataaatctcaaaagtattggcaaaactcactatctatgattcccactggaagtgcagtacccattgtgaaataa
More
|
||||||||||
| Protein seq | MEDIVDTFLVHDDGPDPTDPHMLLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVVLKSLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTTLAKAVYDHFKPHFKCRASVPVDQNPDMNKAFDDQVEPHFECGAFVPVGRNPDMKKVFRDILIDLDKEKYTNPNMMVLDEKQLMDELKEFVKEKRCFIVIDDIWDKESWKLIRCALQESDCGSRLVITTRISEVATHAGEAYKIQPLSRDNSEKLLYARIVDGEWKYFDNPSAKACEKILKKCGGVPLAIITIASLLVSKPGEDWSEVYNSVGFGHEDNDDVGNTRRILSFSYYDLSSHLKDCLLYLCVFPEDHVIEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQPVETKHEGYVDGCCVHDMVLDMIHSLSSEENFVTVLNGDERQKLPGSIARRLALQRVLVHKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRDKTMPSHLGSLLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEIMVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGLLRELRVLRTYFEDLNESMERALLESLSKLHNIRDLHIEGPPLVTRRVTSSARSVSCLHLRYLCLNCFVFSGLPAWIKSSLAPNLSCLDVVVLIVKEQDMETLARLPELRCLVLRLHETELVSIKIHTEDVGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIMPSLEFLEFAVHMRFLKDATQLGFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQTKWQDEQAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLYRKSGKGLLALSSNAVHKLWKWESNDKNPAGMSTTSVPPQVWQPESDILMNDTANGNPEEAAACSLLSKNDCYLISASGGKVSLFNMLNFKTMTTFIAPPPSATFLAFHPHDNNIIAIGTDDSSILLYNIRVDEVSVSRASLVPCLHKSQKYWQNSLSMIPTGSAVPIVK |
||||||||||
| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008600 | OsKeNa_05g0008600.01 | Chr05 | 8534294 | 8540177 | - | NAM | ||
| CDS seq | atggaggacatcgtcgacacattcttggtgcacgacgatggccctgaccccaccgatccacacatgctcctgcgcctccggaagaagttaggcaagctgttcaagaagagcaaggctcgccgtaagatctctaacctgatccaagacattaacaagaagttcgagcaggtgaaagcaaggcatgtcaagtacacagtcgacagcgttgtcctcaagtctctagcggcaacgaccatcgatcctcgtctccagaatctgtacaaaagggcaacagagcttgttggcattgacgggccaagggacgatctcataaacaagctatccctggggggtgatgttgatgtgtccgacaagaagatgaaagtcatctctgtcgttggatttggaggactcggcaagaccactcttgccaaagctgtctatgaccacttcaaaccgcatttcaagtgcagggcttctgttccagtcgaccagaatcctgacatgaataaagcattcgatgaccaggttgaaccgcatttcgaatgcggagcttttgttccagtgggtcggaatcctgacatgaagaaagtctttagagacattctcattgatcttgacaaggaaaagtacacgaatccgaatatgatggtgttggatgaaaagcagctcatggacgaactcaaggaattcgtcaaggagaagaggtgtttcattgttattgatgatatatgggacaaggagtcatggaaattaatcagatgtgctctgcaagaaagtgattgtggaagtagacttgtcataactactcgtatttctgaagttgccacacatgctggtgaagcttacaaaattcagccactttctcgtgataactctgaaaaattattgtatgcaagaatagttgatggtgaatggaagtatttcgataatccatcagctaaggcatgtgaaaaaattttgaagaaatgtggtggtgtaccattagctatcattacaatagctagtttgttggtcagtaaaccagggGaggactggtctgaggtctacaactctgtcggttttgggcatgaagacaatgatgatgtaggtaatactagaaggatattgtcttttagctactatgatctgtcttcacatttaaaagattgcttattgtatctatgtgtatttcccgaagatcatgtgatagagaaaaatagtttgatatggaagtggatagctgaaggtttcatccatgaggaactagcagcagggttaggattatttgagctcggggagaggtgcttcaatgagttgataaatagaagcatgatccagccagtggagacaaaacatgaagggtatgtagatggttgctgcgttcatgatatggttcttgatatgatccactcattatcgagtgaagaaaattttgtcactgtattgaatggtgatgagcgacagaaacttccggggagcattgctcgcaggttagccctgcagcgtgttctagtgcacaaggatggtcagctagctaatatcactctgaagaatgtgagatcccttattgccagtcagtgcttcggttcattatgcctacacactccggttttacgtgtattagatgtgataaactgtgcagaaagtgagacgcctaatgttttggaagatagggacaaaactatgccaagccatcttgggagtttacttcacctgaggtacctcgggttagtagatacatatatcactaagctgcccagggaagtaaggtatctcaagtttctgcagacactggatttaaggggaagtcgcataaaggagctgccagaggaggtgggactgctgacacaacttgtttgcctacgagctgattgggaaataatggtgaagattggtttgatcggtaagttgacctcattgcaagagctttggatagagcctgctgctgctgtttatgatgacgatgctgcttctgttgatgatgatgatgatgctgctgctgttgatgatactacgaagtctacgatgaagtttgtgaatgagctgggcctactgagggaactaagggtgctccggacttattttgaggatttgaatgagagcatggagagagctttgttggaatccctaagcaagctgcacaatatccgggacctgcacattgagggcccacccctagtgacaaggagagtgacaagcagtgcaagatctgtctcctgcctgcatctccgatacctgtgtctgaattgctttgtgttctctggactgccagcatggattaaatcatcgcttgctccgaacctctcctgtctggatgtggttgtgctaattgtgaaagagcaggacatggaaacccttgcgaggttgccagagctccgctgccttgtgctgcgtttgcatgagaccgaattggttagcataaagattcatactgaagatgttggctactttcggaagttgagaatcttaaggatacttggtacatctatctggtttgatctgcacggcagcaagtgcaacatcacagacaatagaagcttagcatctattatcatgccaagtcttgaattcctcgagtttgctgtccatatgcggttcctgaaagatgcaacccagcttggttttgacaagctgcttagcttcgagaagcttggaagaagttcgctccagaaagtcaccatagtactgaaatgtggagatgcccgtctgtcagaggtggaggaagtggctgctgcattgatgaactcagctgcggtccatcccaaacacccaactgttcaaaccaaatggcaagacgaacaagctgtgctctcaccctaccaagaggcatatatgcatgtgagcagaaccccggagttggtaaatgaggcctggaaggcgaacattgttagctctggccgtattcgagcactgcgtatgccagttacagaagcatcttcaagcaaagttatctgtctgctttatagaaaaagtgggaagggacttttagctctcagctcaaatgctgttcataagctgtggaaatgggagagcaatgacaagaatcctgctggcatgtccaccacatctgtcccacctcaagtgtggcaaccggaaagtgacattctaatgaatgacactgctaatggcaaccctgaagaagcagctgcctgcagtctactatccaaaaatgactgctatctaatttctgcatctggtggcaaagtttcgttgttcaacatgttaaatttcaagaccatgactactttcatagcacctccaccctctgcaactttcctcgcattccacccgcatgacaataacatcatagctattggaacggatgactcttcgattctactctacaatatccgtgttgacgaggtgagtgttagccgtgcatctcttgtcccctgtttgcataaatctcaaaagtattggcaaaactcactatctatgattcccactggaagtgcagtacccattgtgaaataa
More
|
|||||||
| Protein seq | MEDIVDTFLVHDDGPDPTDPHMLLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVVLKSLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTTLAKAVYDHFKPHFKCRASVPVDQNPDMNKAFDDQVEPHFECGAFVPVGRNPDMKKVFRDILIDLDKEKYTNPNMMVLDEKQLMDELKEFVKEKRCFIVIDDIWDKESWKLIRCALQESDCGSRLVITTRISEVATHAGEAYKIQPLSRDNSEKLLYARIVDGEWKYFDNPSAKACEKILKKCGGVPLAIITIASLLVSKPGEDWSEVYNSVGFGHEDNDDVGNTRRILSFSYYDLSSHLKDCLLYLCVFPEDHVIEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQPVETKHEGYVDGCCVHDMVLDMIHSLSSEENFVTVLNGDERQKLPGSIARRLALQRVLVHKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRDKTMPSHLGSLLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEIMVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGLLRELRVLRTYFEDLNESMERALLESLSKLHNIRDLHIEGPPLVTRRVTSSARSVSCLHLRYLCLNCFVFSGLPAWIKSSLAPNLSCLDVVVLIVKEQDMETLARLPELRCLVLRLHETELVSIKIHTEDVGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIMPSLEFLEFAVHMRFLKDATQLGFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQTKWQDEQAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLYRKSGKGLLALSSNAVHKLWKWESNDKNPAGMSTTSVPPQVWQPESDILMNDTANGNPEEAAACSLLSKNDCYLISASGGKVSLFNMLNFKTMTTFIAPPPSATFLAFHPHDNNIIAIGTDDSSILLYNIRVDEVSVSRASLVPCLHKSQKYWQNSLSMIPTGSAVPIVK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008600 | OsKeNa_05g0008600.02 | Chr05 | 8534294 | 8540177 | - | NAM | ||
| CDS seq | atggaggacatcgtcgacacattcttggtgcacgacgatggccctgaccccaccgatccacacatgctcctgcgcctccggaagaagttaggcaagctgttcaagaagagcaaggctcgccgtaagatctctaacctgatccaagacattaacaagaagttcgagcaggtgaaagcaaggcatgtcaagtacacagtcgacagcgttgtcctcaagtctctagcggcaacgaccatcgatcctcgtctccagaatctgtacaaaagggcaacagagcttgttggcattgacgggccaagggacgatctcataaacaagctatccctggggggtgatgttgatgtgtccgacaagaagatgaaagtcatctctgtcgttggatttggaggactcggcaagaccactcttgccaaagctgtctatgaccacttcaaaccgcatttcaagtgcagggcttctgttccagtcgaccagaatcctgacatgaataaagcattcgatgaccaggttgaaccgcatttcgaatgcggagcttttgttccagtgggtcggaatcctgacatgaagaaagtctttagagacattctcattgatcttgacaaggaaaagtacacgaatccgaatatgatggtgttggatgaaaagcagctcatggacgaactcaaggaattcgtcaaggagaagaggtgtttcattgttattgatgatatatgggacaaggagtcatggaaattaatcagatgtgctctgcaagaaagtgattgtggaagtagacttgtcataactactcgtatttctgaagttgccacacatgctggtgaagcttacaaaattcagccactttctcgtgataactctgaaaaattattgtatgcaagaatagttgatggtgaatggaagtatttcgataatccatcagctaaggcatgtgaaaaaattttgaagaaatgtggtggtgtaccattagctatcattacaatagctagtttgttggtcagtaaaccagggGaggactggtctgaggtctacaactctgtcggttttgggcatgaagacaatgatgatgtaggtaatactagaaggatattgtcttttagctactatgatctgtcttcacatttaaaagattgcttattgtatctatgtgtatttcccgaagatcatgtgatagagaaaaatagtttgatatggaagtggatagctgaaggtttcatccatgaggaactagcagcagggttaggattatttgagctcggggagaggtgcttcaatgagttgataaatagaagcatgatccagccagtggagacaaaacatgaagggtatgtagatggttgctgcgttcatgatatggttcttgatatgatccactcattatcgagtgaagaaaattttgtcactgtattgaatggtgatgagcgacagaaacttccggggagcattgctcgcaggttagccctgcagcgtgttctagtgcacaaggatggtcagctagctaatatcactctgaagaatgtgagatcccttattgccagtcagtgcttcggttcattatgcctacacactccggttttacgtgtattagatgtgataaactgtgcagaaagtgagacgcctaatgttttggaagatagggacaaaactatgccaagccatcttgggagtttacttcacctgaggtacctcgggttagtagatacatatatcactaagctgcccagggaagtaaggtatctcaagtttctgcagacactggatttaaggggaagtcgcataaaggagctgccagaggaggtgggactgctgacacaacttgtttgcctacgagctgattgggaaataatggtgaagattggtttgatcggtaagttgacctcattgcaagagctttggatagagcctgctgctgctgtttatgatgacgatgctgcttctgttgatgatgatgatgatgctgctgctgttgatgatactacgaagtctacgatgaagtttgtgaatgagctgggcctactgagggaactaagggtgctccggacttattttgaggatttgaatgagagcatggagagagctttgttggaatccctaagcaagctgcacaatatccgggacctgcacattgagggcccacccctagtgacaaggagagtgacaagcagtgcaagatctgtctcctgcctgcatctccgatacctgtgtctgaattgctttgtgttctctggactgccagcatggattaaatcatcgcttgctccgaacctctcctgtctggatgtggttgtgctaattgtgaaagagcaggacatggaaacccttgcgaggttgccagagctccgctgccttgtgctgcgtttgcatgagaccgaattggttagcataaagattcatactgaagatgttggctactttcggaagttgagaatcttaaggatacttggtacatctatctggtttgatctgcacggcagcaagtgcaacatcacagacaatagaagcttagcatctattatcatgccaagtcttgaattcctcgagtttgctgtccatatgcggttcctgaaagatgcaacccagcttggttttgacaagctgcttagcttcgagaagcttggaagaagttcgctccagaaagtcaccatagtactgaaatgtggagatgcccgtctgtcagaggtggaggaagtggctgctgcattgatgaactcagctgcggtccatcccaaacacccaactgttcaaaccaaatggcaagacgaacaagctgtgctctcaccctaccaagaggcatatatgcatgtgagcagaaccccggagttggtaaatgaggcctggaaggcgaacattgttagctctggccgtattcgagcactgcgtatgccagttacagaagcatcttcaagcaaagttatctgtctgctttatagaaaaagtgggaagggacttttagctctcagctcaaatgctgttcataagctgtggaaatgggagagcaatgacaagaatcctgctggcatggttagacaggagaactaa
More
|
|||||||
| Protein seq | MEDIVDTFLVHDDGPDPTDPHMLLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVVLKSLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTTLAKAVYDHFKPHFKCRASVPVDQNPDMNKAFDDQVEPHFECGAFVPVGRNPDMKKVFRDILIDLDKEKYTNPNMMVLDEKQLMDELKEFVKEKRCFIVIDDIWDKESWKLIRCALQESDCGSRLVITTRISEVATHAGEAYKIQPLSRDNSEKLLYARIVDGEWKYFDNPSAKACEKILKKCGGVPLAIITIASLLVSKPGEDWSEVYNSVGFGHEDNDDVGNTRRILSFSYYDLSSHLKDCLLYLCVFPEDHVIEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQPVETKHEGYVDGCCVHDMVLDMIHSLSSEENFVTVLNGDERQKLPGSIARRLALQRVLVHKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRDKTMPSHLGSLLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEIMVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGLLRELRVLRTYFEDLNESMERALLESLSKLHNIRDLHIEGPPLVTRRVTSSARSVSCLHLRYLCLNCFVFSGLPAWIKSSLAPNLSCLDVVVLIVKEQDMETLARLPELRCLVLRLHETELVSIKIHTEDVGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIMPSLEFLEFAVHMRFLKDATQLGFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQTKWQDEQAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLYRKSGKGLLALSSNAVHKLWKWESNDKNPAGMVRQEN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008600 | OsKeNa_05g0008600.03 | Chr05 | 8531907 | 8535513 | - | IsoSeq | ||
| CDS seq | atggtgcagttcatgtgctggagccgttggacacacccgatgatatcatcagcaattcaattcagcaggggcgttttggtgacagcggatgatgtgtggacagggtgctcaatacggttggcaggctggatggcaatacttgcttggcctatggtgatagattatttttttcgccagccggttaagaaagcagaccaaatttcatcaagggaagaagtacttactaca
More
|
|||||||
| Protein seq | MVQFMCWSRWTHPMISSAIQFSRGVLVTADDVWTGCSIRLAGWMAILAWPMVIDYFFRQPVKKADQISSREEVLTT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 8534707 | 8535080 | - | OsKeNa_05g0008600.02 | OsKeNa_05g0008600.03,OsKeNa_05g0008600.02,OsKeNa_05g0008600.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.499072 | 6.762794 | 4.518642 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0240200 | RBH | 2.018401 | 1.757905 | 2.617826 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g15040 | RBH | 1.361988 | 1.224824 | 0.702333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0240200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008550 | RBH | 0.599830 | 11.994838 | 6.114130 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008480 | RBH | 0.964868 | 7.102261 | 9.432404 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008560 | RBH | 0.206039 | 0.410442 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008630 | RBH | 2.051888 | 15.465731 | 8.828881 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0128800 | RBH | 3.4077915 | 30.105421 | 7.804653 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008490 | RBH | 0.106332 | 0.919066 | 0.653626 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0128200 | RBH | 4.35323 | 31.3632735 | 9.0594445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0008510 | RBH | 0.330520 | 1.218490 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008460 | RBH | 0.249246 | 19.344297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008560 | RBH | 2.235308 | 25.183266 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0008640 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008570 | RBH | 0.222011 | 6.504337 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008390 | RBH | 0.038556 | 0.704895 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008660 | RBH | 0.0 | 3.117085 | 0.207815 |
