Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0008450 | OGI:05022400 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:8372729-8375723 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtaagtaaaaatattgagataagggcagagtagtcgagtacctctcgttgtctcctccgctccttgcctccttgcgccgccgccaagacgagtcgcggctgaacaggggagggccgggcggcgatctccatcgcagcggaggggaggggatcctggtgcgtcctctttctgattcctctctctctctctctctcccaccccaccgggactggaatttgcttgcgcttctcttctagatcttctcctcctccttaatttgatagccttaaacctctcttaaataattcaaggaataacagtttgtttgttcacccaaaagtttgggggttcaactgaacccccatgtcccaagttggatccgcccctgatttttgggaagcctttgcaattggaacacagaagggggttctgtcccaaaaccaacttctggccagtttgatcaagcaataccacatcgaggcagtacccttcagaaagaattagcttgtaacccttatctgcccaccattgtgccgtcagtggggcaccatgactgttcacccggcctatctgacaattctatgtctaaggaagatgctatgtcaactggtgattcaacggaaagccttgatattgattgccttgatgatggggaCTccgaagtggtatcttccttgcaacatttggcagatgataagcttcatatttctgacaacagggatgttgcaggtttgttttcttgccggaattggcaattctgttttggccatttgtgcatcctatgaaagaattggtgattagcggtttgtttacaggtgtggcatccaaatggacgaagcatggttgtaattcagtagaaattgattatatcgtcgacattgacaacaaccatgaggatccacagctgtgtgcaactcttgcttttgacatttacaagcacttgcgagtggctgaggtgatagattcttttacatgccatattccgtcacctgtatagagtgatgcattgcgtcatccttgtctgctttccgatttagcttcttgcttagcatattcttattgtaaaatataatgctacgtagcatcactgacttggttattccctgtttgttttgctcacaaaagaatctgatattatgtttgttgctgttgtgctgtgatgctgcattttagcagaccaagaaaaggccttcaacagattttgtggaaaccattcagaagaacattgacacaagcatgagggcagtgttaatagactggcttgtggaagtaagctactctatttcaggataaaaacagggttcagaagctagaggcacagcaaatgatccatttaatttctattacattcatgactcgtaccaattcaggtcacagaagaatatcggcttgtacctgaaaccttatacctcacagtcaattacattgaccggtatctctcgagcaaggtgatcaatcggcggaaaatgcaattacttggtgtcgcttgcctgcttatagcttcgtaagatcccatttgcttctgtttatgttctcttgtttttcttttatcttcttttttatgttttattctgattcagtttatatatggtcaaatttcagtaagtatgaagagatatgcccaccccaagtagaagagctctgctAtatttctgacaatacatacactaaggatgaggtctgtgtcccagtatagattgggctttgttctttttatttccttgtctcttattctcatcttctaacgaacaggttttgaaaatggaagcttctgtcctgaaatacttgaagtttgagatgactgcacctacaacaaaatgctttttgaggtagtattttctgttacaacaatgattattatcatgcctatagttactaataccaaatattgttcatggttccacaataggagatttctacgagctgctcaagtatgccatgaggtacttgttttcttcaatagcttacagactctgccactcctgcattctcatgtagcttactcaatcaacctttccttctgcaggctccagttttgcatcttgagttcctagctaattacattgcggagctatcacttctggagtacagcttaatttgctatgtaccgtcacttatagctgcgtcttctattttcttggcgaagtttatccttaagccaacagagaatccttgggtataatgctttaaactttgcagattttattgctattctgcaaactagactaaatgtattgatttctttctctcttaaattggaaacagAattcaacactttcattctacacacaatacaaaccatccgacctatgcaattgtgcaaaaggactacaccggcttttcttggttggccctggaggcaaccttcgagcagttagagaaaaatacagtcaacacaaggtgagtgaagtcaaaataaggccattgttgctggaacgcatttacttctatttggtaataaattgtttctatcacctatctatttgttctcagtacaaattcgtagcaaagaagtactctccaccatcaattccagcagagtttttcgaagatccaagcagctacaagcctgattaactccagttactccctgaagtcttgcagtagccccgaatggtaggctgatttgtacagattgctcatgcgcaaggcaagcacacgccacgcgCccttgtgttagcagattggtagattgtacattgtagatgaagtggtagagctgtacatcaagttggcctcatttgtgtatgcacggcaagtgcatttctctggcggcggcttgcttacaaccacagtgcataaagctgctagtcctttcctactctatccattttgcttgctccaagcttgtttgatatgattttaccgtgttactgtaaacaaaatggatatgctggataAGagataaatgcctgagggcaagtgaagtatgaatatatttgtccttctcagtgggatgaacttgactgtagctattcctttgacctgaacaacctttgtttccatgtggtagaat
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| CDS seq | atgtctaaggaagatgctatgtcaactggtgattcaacggaaagccttgatattgattgccttgatgatggggaCTccgaagtggtatcttccttgcaacatttggcagatgataagcttcatatttctgacaacagggatgttgcaggtgtggcatccaaatggacgaagcatggttgtaattcagtagaaattgattatatcgtcgacattgacaacaaccatgaggatccacagctgtgtgcaactcttgcttttgacatttacaagcacttgcgagtggctgagaccaagaaaaggccttcaacagattttgtggaaaccattcagaagaacattgacacaagcatgagggcagtgttaatagactggcttgtggaagtcacagaagaatatcggcttgtacctgaaaccttatacctcacagtcaattacattgaccggtatctctcgagcaaggtgatcaatcggcggaaaatgcaattacttggtgtcgcttgcctgcttatagcttctaagtatgaagagatatgcccaccccaagtagaagagctctgctAtatttctgacaatacatacactaaggatgaggttttgaaaatggaagcttctgtcctgaaatacttgaagtttgagatgactgcacctacaacaaaatgctttttgaggagatttctacgagctgctcaagtatgccatgaggctccagttttgcatcttgagttcctagctaattacattgcggagctatcacttctggagtacagcttaatttgctatgtaccgtcacttatagctgcgtcttctattttcttggcgaagtttatccttaagccaacagagaatccttggAattcaacactttcattctacacacaatacaaaccatccgacctatgcaattgtgcaaaaggactacaccggcttttcttggttggccctggaggcaaccttcgagcagttagagaaaaatacagtcaacacaagtacaaattcgtagcaaagaagtactctccaccatcaattccagcagagtttttcgaagatccaagcagctacaagcctgattaa
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| Protein seq | MSKEDAMSTGDSTESLDIDCLDDGDSEVVSSLQHLADDKLHISDNRDVAGVASKWTKHGCNSVEIDYIVDIDNNHEDPQLCATLAFDIYKHLRVAETKKRPSTDFVETIQKNIDTSMRAVLIDWLVEVTEEYRLVPETLYLTVNYIDRYLSSKVINRRKMQLLGVACLLIASKYEEICPPQVEELCYISDNTYTKDEVLKMEASVLKYLKFEMTAPTTKCFLRRFLRAAQVCHEAPVLHLEFLANYIAELSLLEYSLICYVPSLIAASSIFLAKFILKPTENPWNSTLSFYTQYKPSDLCNCAKGLHRLFLVGPGGNLRAVREKYSQHKYKFVAKKYSPPSIPAEFFEDPSSYKPD |
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| Function | Cyclin-A1-4 [UniProtKB/Swiss-Prot:Q0DJR9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008450 | OsKeNa_05g0008450.01 | Chr05 | 8372729 | 8375723 | + | NAM | ||
| CDS seq | atgtctaaggaagatgctatgtcaactggtgattcaacggaaagccttgatattgattgccttgatgatggggaCTccgaagtggtatcttccttgcaacatttggcagatgataagcttcatatttctgacaacagggatgttgcaggtgtggcatccaaatggacgaagcatggttgtaattcagtagaaattgattatatcgtcgacattgacaacaaccatgaggatccacagctgtgtgcaactcttgcttttgacatttacaagcacttgcgagtggctgagaccaagaaaaggccttcaacagattttgtggaaaccattcagaagaacattgacacaagcatgagggcagtgttaatagactggcttgtggaagtcacagaagaatatcggcttgtacctgaaaccttatacctcacagtcaattacattgaccggtatctctcgagcaaggtgatcaatcggcggaaaatgcaattacttggtgtcgcttgcctgcttatagcttctaagtatgaagagatatgcccaccccaagtagaagagctctgctAtatttctgacaatacatacactaaggatgaggttttgaaaatggaagcttctgtcctgaaatacttgaagtttgagatgactgcacctacaacaaaatgctttttgaggagatttctacgagctgctcaagtatgccatgaggctccagttttgcatcttgagttcctagctaattacattgcggagctatcacttctggagtacagcttaatttgctatgtaccgtcacttatagctgcgtcttctattttcttggcgaagtttatccttaagccaacagagaatccttggAattcaacactttcattctacacacaatacaaaccatccgacctatgcaattgtgcaaaaggactacaccggcttttcttggttggccctggaggcaaccttcgagcagttagagaaaaatacagtcaacacaagtacaaattcgtagcaaagaagtactctccaccatcaattccagcagagtttttcgaagatccaagcagctacaagcctgattaa
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| Protein seq | MSKEDAMSTGDSTESLDIDCLDDGDSEVVSSLQHLADDKLHISDNRDVAGVASKWTKHGCNSVEIDYIVDIDNNHEDPQLCATLAFDIYKHLRVAETKKRPSTDFVETIQKNIDTSMRAVLIDWLVEVTEEYRLVPETLYLTVNYIDRYLSSKVINRRKMQLLGVACLLIASKYEEICPPQVEELCYISDNTYTKDEVLKMEASVLKYLKFEMTAPTTKCFLRRFLRAAQVCHEAPVLHLEFLANYIAELSLLEYSLICYVPSLIAASSIFLAKFILKPTENPWNSTLSFYTQYKPSDLCNCAKGLHRLFLVGPGGNLRAVREKYSQHKYKFVAKKYSPPSIPAEFFEDPSSYKPD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0008450 | OsKeNa_05g0008450.02 | Chr05 | 8372729 | 8375723 | + | NAM | ||
| CDS seq | atgtcaactggtgattcaacggaaagccttgatattgattgccttgatgatggggaCTccgaagtggtatcttccttgcaacatttggcagatgataagcttcatatttctgacaacagggatgttgcaggtgtggcatccaaatggacgaagcatggttgtaattcagtagaaattgattatatcgtcgacattgacaacaaccatgaggatccacagctgtgtgcaactcttgcttttgacatttacaagcacttgcgagtggctgagaccaagaaaaggccttcaacagattttgtggaaaccattcagaagaacattgacacaagcatgagggcagtgttaatagactggcttgtggaagtcacagaagaatatcggcttgtacctgaaaccttatacctcacagtcaattacattgaccggtatctctcgagcaaggtgatcaatcggcggaaaatgcaattacttggtgtcgcttgcctgcttatagcttctaagtatgaagagatatgcccaccccaagtagaagagctctgctAtatttctgacaatacatacactaaggatgaggttttgaaaatggaagcttctgtcctgaaatacttgaagtttgagatgactgcacctacaacaaaatgctttttgaggagatttctacgagctgctcaagtatgccatgaggctccagttttgcatcttgagttcctagctaattacattgcggagctatcacttctggagtacagcttaatttgctatgtaccgtcacttatagctgcgtcttctattttcttggcgaagtttatccttaagccaacagagaatccttggAattcaacactttcattctacacacaatacaaaccatccgacctatgcaattgtgcaaaaggactacaccggcttttcttggttggccctggaggcaaccttcgagcagttagagaaaaatacagtcaacacaagtacaaattcgtagcaaagaagtactctccaccatcaattccagcagagtttttcgaagatccaagcagctacaagcctgat
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| Protein seq | MSTGDSTESLDIDCLDDGDSEVVSSLQHLADDKLHISDNRDVAGVASKWTKHGCNSVEIDYIVDIDNNHEDPQLCATLAFDIYKHLRVAETKKRPSTDFVETIQKNIDTSMRAVLIDWLVEVTEEYRLVPETLYLTVNYIDRYLSSKVINRRKMQLLGVACLLIASKYEEICPPQVEELCYISDNTYTKDEVLKMEASVLKYLKFEMTAPTTKCFLRRFLRAAQVCHEAPVLHLEFLANYIAELSLLEYSLICYVPSLIAASSIFLAKFILKPTENPWNSTLSFYTQYKPSDLCNCAKGLHRLFLVGPGGNLRAVREKYSQHKYKFVAKKYSPPSIPAEFFEDPSSYKPD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 8372883 | 8373302 | + | OsKeNa_05g0008450.01 | OsKeNa_05g0008450.01,OsKeNa_05g0008450.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.581486 | 0.0 | 1.925221 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0237100 | RBH | 0.783287 | 2.034809 | 4.001002 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14730 | RBH | 0.811557 | 1.762721 | 0.678564 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0237100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0008400 | RBH | 0.388231 | 4.457682 | 4.939972 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009190 | RBH | 0.0 | 0.566216 | 0.206938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008320 | RBH | 1.794464 | 0.000000 | 6.347222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0008410 | RBH | 0.021838 | 0.124748 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0008480 | RBH | 3.336626 | 9.431880 | 11.464391 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0125600 | RBH | 3.729902 | 6.9616415 | 8.950038 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008320 | RBH | 0.636625 | 0.189685 | 1.447308 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0125400 | RBH | 4.6639365 | 6.363578 | 9.6969075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0008350 | RBH | 0.271330 | 0.063397 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008290 | RBH | 0.534361 | 10.627002 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0008390 | RBH | 7.101608 | 4.931176 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0008460 | RBH | 1.067742 | 0.347849 | 0.805642 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0008420 | RBH | 0.433509 | 0.839389 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008210 | RBH | 0.442912 | 0.000000 | 2.847371 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0008500 | RBH | 1.992741 | 9.935744 | 5.784164 |
