Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0006160 | OGI:11054640 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:5463745-5465779 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctcatcacggcggagggacttggggagagcagAagaGgcgaggtggtgtgaggaagagcgttttctccatgagagggggcgtgagggaggggatcggagcaacttcgtttccaacctagagttggctttgggcaggggaacggtggaagattccggccgccgttcggccacaaactgccattcggccacaagacgagaggggctggtggcagagcaaggagaggtggcctcgctggtagaactggacgctactttggcgctcatgttccccgcggcggcaaccaagtgggcgggaacatgttcaagcgtcgctgggatgagctggcactaatgaaggaGggcggcagcagcagggggaccggtgagatGACgcagacgaaggaggaggcaaaaggtttaggaggaagcaagaaactGggtcagatcaaggtaggagaTGtggttgtcccggtgaattcagaagtAaagaaaggaaagaattatgtctctgagtttgatgatgatgaagatgatttgttggagttcgatgaggagctgcagctgattagggacaagAaaggggatgatcaaaagggtggtgcacgggtgaaagtttgctctaggtgcactcaaaaGggacatagtggtgcactcaaaagggacatagtgttgctgattgtaaggtggatgtttattgcgatatctgcgactgtagcgagcatgtcaaccacaaatgtccagtcctaaagcttccaaagccggtggttcaggcggttgggtatgcggttgaaggcctagggtttcagcacatcccacatcaaccgcttcaaaggaacaagaagaacacgaagaaggctcTtgtgcgtgtggttggtggtgctctttcggtggaaaggttggtcactcttctccacaagttgtgtccaactaaatggaagtgggaaccggtgccgcAggggaaggacgcttttattgttcttttcccttcaaagggcgaattgcaacgggccatcaactttgggggtgcggatgtgaaggaaggaggggtagctacgggagtgagggTggagtttgaagagtggtttgaggaagaagagggttttcttctacctaaggtatgggttaaggtttttgggctgaggaagaaactaagggaatatttaactttatgggcagtaggctctcttttaggggCAAcacaattggttgatatgaaaactactAaaaagaatgtttttgggacattgtttgtggcagtccttaacccaaaattgattcctaaggtgcttgatgtggtaattggggatcattattttgagttaaaatttgaggtggagaaaaaaggagtcgatgagaatagggaagaagtggagtttaatttggaggattgggatggagatgagaaggatggtaatgtagagggagaggaaagtggagaagacaatgaaggaggggagaagggaccaaaaatgtcAaaggttgatgatatggtaattgatgacaatcatgataggagtgaagggagtaaagaggcacaggaaggtgttgatttagagaaagaaatggatttttctatgatggctgaaaatatcttggatgtggctatccaagatgtgttggaggaggtgtatgagaGggtagagagggaggaaatggaggaaaatgaggtggggGTgtagcaggaaaagattcttcagctagctaattttggggaggtgttggtgacaccaaaaagggttagcgagaggttgatgggtagcagcgggagacattcacttgaaaaggctaagtccagaaaggcgtggatgaatctcgaccctctctcaggtaatgaatttaagaattcatgtcattctttctcgcatgctcatgctgttagaaatttaaatgatataggtctgaacctaggtgactctagtaacttagtttctgactcggttttgctcttaagggagggtggttgtctcaaatctgaaaacttaggtgctttggcttctcctttggtagAaaatcatggtgggtcttgtagtaactcagactaagttgatgagg
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| CDS seq | atggctcatcacggcggagggacttggggagagcagAagaGgcgaggtggtgtgaggaagagcgttttctccatgagagggggcgggaacggtggaagattccggccgccgttcggccacaaactgccattcggccacaagacgagaggggctggtggcagagcaaggagaggtggcctcgctggtagaactggacgctactttggcgctcatgttccccgcggcggcaaccaagtgggcgggaacatgttcaagcgtcgctgggatgagctggcactaatgaaggaGggcggcagcagcagggggaccggtgagatGACgcagacgaaggaggaggcaaaaggtttaggaggaagcaagaaactGggtcagatcaaggtaggagaTGtggttgtcccggtgaattcagaagtAaagaaaggaaagaattatgtctctgagtttgatgatgatgaagatgatttgttggagttcgatgaggagctgcagctgattagggacaagAaaggggatgatcaaaagggtggtgcacgggtgaaagtttgctctaggtgcactcaaaaGggacatagtggtgcactcaaaagggacatagtgttgctgattgtggatgtttattgcgatatctgcgactgtagcgagcatgtcaaccacaaatgtccagtcctaaagcttccaaagccggtggttcaggcggttgggtatgcggttgaaggcctagggtttcagcacatcccacatcaaccgcttcaaaggaacaagaagaacacgaagaaggctcTtgtgcgtgtggttggtggtgctctttcggtggaaaggttggtcactcttctccacaagttgtgtccaactaaatggaagtgggaaccggtgccgcAggggaaggacgcttttattgttcttttcccttcaaagggcgaattgcaacgggccatcaactttgggggtgcggatgtgaaggaaggaggggaaagtggagaagacaatgaaggaggggagaagggaccaaaaatgtcAaaggttgatgatatggtaattgatgacaatcatgataggagtgaagggagtaaagaggcacaggaaggtgttgatttagagaaagaaatggatttttctatgatggctgaaaatatcttggatgtggctatccaagatgtgttggaggaggtgtatgagaGggtagagagggaggaaatggaggaaaatgaggtgggggaaaagattcttcagctagctaattttggggaggtgttggtgacaccaaaaagggttagcgagaggttgatgggtagcagcgggagacattcacttgaaaaggctaagtccagaaaggcgtggatgaatctcgaccctctctcaggtaatgaatttaagaattcatgtcattctttctcgcatgctcatgctgttagaaatttaaatgatataggtctgaacctaggtgactctagtaacttagtttctgactcggttttgctcttaagggagggtggttgtctcaaatctgaaaacttaggtgctttggcttctcctttggtagAaaatcatggtgggtcttgtagtaactcagactaa
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| Protein seq | MAHHGGGTWGEQKRRGGVRKSVFSMRGGGNGGRFRPPFGHKLPFGHKTRGAGGRARRGGLAGRTGRYFGAHVPRGGNQVGGNMFKRRWDELALMKEGGSSRGTGEMTQTKEEAKGLGGSKKLGQIKVGDVVVPVNSEVKKGKNYVSEFDDDEDDLLEFDEELQLIRDKKGDDQKGGARVKVCSRCTQKGHSGALKRDIVLLIVDVYCDICDCSEHVNHKCPVLKLPKPVVQAVGYAVEGLGFQHIPHQPLQRNKKNTKKALVRVVGGALSVERLVTLLHKLCPTKWKWEPVPQGKDAFIVLFPSKGELQRAINFGGADVKEGGESGEDNEGGEKGPKMSKVDDMVIDDNHDRSEGSKEAQEGVDLEKEMDFSMMAENILDVAIQDVLEEVYERVEREEMEENEVGEKILQLANFGEVLVTPKRVSERLMGSSGRHSLEKAKSRKAWMNLDPLSGNEFKNSCHSFSHAHAVRNLNDIGLNLGDSSNLVSDSVLLLREGGCLKSENLGALASPLVENHGGSCSNSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0006160 | OsKeNa_05g0006160.01 | Chr05 | 5463745 | 5465779 | + | NAM | ||
| CDS seq | atggctcatcacggcggagggacttggggagagcagAagaGgcgaggtggtgtgaggaagagcgttttctccatgagagggggcgggaacggtggaagattccggccgccgttcggccacaaactgccattcggccacaagacgagaggggctggtggcagagcaaggagaggtggcctcgctggtagaactggacgctactttggcgctcatgttccccgcggcggcaaccaagtgggcgggaacatgttcaagcgtcgctgggatgagctggcactaatgaaggaGggcggcagcagcagggggaccggtgagatGACgcagacgaaggaggaggcaaaaggtttaggaggaagcaagaaactGggtcagatcaaggtaggagaTGtggttgtcccggtgaattcagaagtAaagaaaggaaagaattatgtctctgagtttgatgatgatgaagatgatttgttggagttcgatgaggagctgcagctgattagggacaagAaaggggatgatcaaaagggtggtgcacgggtgaaagtttgctctaggtgcactcaaaaGggacatagtggtgcactcaaaagggacatagtgttgctgattgtggatgtttattgcgatatctgcgactgtagcgagcatgtcaaccacaaatgtccagtcctaaagcttccaaagccggtggttcaggcggttgggtatgcggttgaaggcctagggtttcagcacatcccacatcaaccgcttcaaaggaacaagaagaacacgaagaaggctcTtgtgcgtgtggttggtggtgctctttcggtggaaaggttggtcactcttctccacaagttgtgtccaactaaatggaagtgggaaccggtgccgcAggggaaggacgcttttattgttcttttcccttcaaagggcgaattgcaacgggccatcaactttgggggtgcggatgtgaaggaaggaggggaaagtggagaagacaatgaaggaggggagaagggaccaaaaatgtcAaaggttgatgatatggtaattgatgacaatcatgataggagtgaagggagtaaagaggcacaggaaggtgttgatttagagaaagaaatggatttttctatgatggctgaaaatatcttggatgtggctatccaagatgtgttggaggaggtgtatgagaGggtagagagggaggaaatggaggaaaatgaggtgggggaaaagattcttcagctagctaattttggggaggtgttggtgacaccaaaaagggttagcgagaggttgatgggtagcagcgggagacattcacttgaaaaggctaagtccagaaaggcgtggatgaatctcgaccctctctcaggtaatgaatttaagaattcatgtcattctttctcgcatgctcatgctgttagaaatttaaatgatataggtctgaacctaggtgactctagtaacttagtttctgactcggttttgctcttaagggagggtggttgtctcaaatctgaaaacttaggtgctttggcttctcctttggtagAaaatcatggtgggtcttgtagtaactcagactaa
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| Protein seq | MAHHGGGTWGEQKRRGGVRKSVFSMRGGGNGGRFRPPFGHKLPFGHKTRGAGGRARRGGLAGRTGRYFGAHVPRGGNQVGGNMFKRRWDELALMKEGGSSRGTGEMTQTKEEAKGLGGSKKLGQIKVGDVVVPVNSEVKKGKNYVSEFDDDEDDLLEFDEELQLIRDKKGDDQKGGARVKVCSRCTQKGHSGALKRDIVLLIVDVYCDICDCSEHVNHKCPVLKLPKPVVQAVGYAVEGLGFQHIPHQPLQRNKKNTKKALVRVVGGALSVERLVTLLHKLCPTKWKWEPVPQGKDAFIVLFPSKGELQRAINFGGADVKEGGESGEDNEGGEKGPKMSKVDDMVIDDNHDRSEGSKEAQEGVDLEKEMDFSMMAENILDVAIQDVLEEVYERVEREEMEENEVGEKILQLANFGEVLVTPKRVSERLMGSSGRHSLEKAKSRKAWMNLDPLSGNEFKNSCHSFSHAHAVRNLNDIGLNLGDSSNLVSDSVLLLREGGCLKSENLGALASPLVENHGGSCSNSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g15200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006120 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010530 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015080 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0008590 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010450 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010390 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010520 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010530 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010550 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G010150 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006170 | RBH | 0.0 | 0.0 | 0.0 |
