Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0005560 | OGI:05013860 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:4810381-4810866 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacagtgccaaggaggagatgcgccgccgtgccgccaccaccgccggctcgccggacgccggcgaagccgactccatagccgtccacctgcaggggtggtgcagggcgtgcctgcacctcgccgcgctcaccttcctcgcctgcgccttcgtccagacgacgcgcccagcgctgtctgacccgtgggacctcgcgttcgtcgtcgccgcctacgccaacctcgccgcgctcttcgtcgtcctccgccgcgtcaagcagctcacgccgatgtcgccggcgaaggagcgcaggcggctgctgcgacaagcctgggagctgttgactgccctcagctgcgcgtttgcgtaccgcgtagagcagaccatgccagccgccatggccgtgttcgtctgggccatgacggcctccgtcgtcgtcggtggggtctacttcctggttctcaacgatggccgtggatcaggggattgcgaccgtgagtattaa
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| CDS seq | atggacagtgccaaggaggagatgcgccgccgtgccgccaccaccgccggctcgccggacgccggcgaagccgactccatagccgtccacctgcaggggtggtgcagggcgtgcctgcacctcgccgcgctcaccttcctcgcctgcgccttcgtccagacgacgcgcccagcgctgtctgacccgtgggacctcgcgttcgtcgtcgccgcctacgccaacctcgccgcgctcttcgtcgtcctccgccgcgtcaagcagctcacgccgatgtcgccggcgaaggagcgcaggcggctgctgcgacaagcctgggagctgttgactgccctcagctgcgcgtttgcgtaccgcgtagagcagaccatgccagccgccatggccgtgttcgtctgggccatgacggcctccgtcgtcgtcggtggggtctacttcctggttctcaacgatggccgtggatcaggggattgcgaccgtgagtattaa
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| Protein seq | MDSAKEEMRRRAATTAGSPDAGEADSIAVHLQGWCRACLHLAALTFLACAFVQTTRPALSDPWDLAFVVAAYANLAALFVVLRRVKQLTPMSPAKERRRLLRQAWELLTALSCAFAYRVEQTMPAAMAVFVWAMTASVVVGGVYFLVLNDGRGSGDCDREY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0005560 | OsKeNa_05g0005560.01 | Chr05 | 4810381 | 4810866 | + | NAM | ||
| CDS seq | atggacagtgccaaggaggagatgcgccgccgtgccgccaccaccgccggctcgccggacgccggcgaagccgactccatagccgtccacctgcaggggtggtgcagggcgtgcctgcacctcgccgcgctcaccttcctcgcctgcgccttcgtccagacgacgcgcccagcgctgtctgacccgtgggacctcgcgttcgtcgtcgccgcctacgccaacctcgccgcgctcttcgtcgtcctccgccgcgtcaagcagctcacgccgatgtcgccggcgaaggagcgcaggcggctgctgcgacaagcctgggagctgttgactgccctcagctgcgcgtttgcgtaccgcgtagagcagaccatgccagccgccatggccgtgttcgtctgggccatgacggcctccgtcgtcgtcggtggggtctacttcctggttctcaacgatggccgtggatcaggggattgcgaccgtgagtattaa
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| Protein seq | MDSAKEEMRRRAATTAGSPDAGEADSIAVHLQGWCRACLHLAALTFLACAFVQTTRPALSDPWDLAFVVAAYANLAALFVVLRRVKQLTPMSPAKERRRLLRQAWELLTALSCAFAYRVEQTMPAAMAVFVWAMTASVVVGGVYFLVLNDGRGSGDCDREY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0181700 | SBH | 0.0 | 0.356660 | 0.607964 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08890 | RBH | 0.000000 | 0.0 | 0.043938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0181700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005600 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005540 | RBH | 0.0 | 0.104894 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005670 | RBH | 0.0 | 3.610475 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0074800 | RBH | 1.8332095 | 168.431282 | 0.918344 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0075800 | RBH | 0.0060585 | 1.5548805 | 0.0134575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005580 | RBH | 0.000000 | 0.457230 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005510 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005590 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005600 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005630 | RBH | 0.0 | 1.189748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005460 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005690 | RBH | 0.0 | 6.524916 | 0.000000 |
