Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0004260 | OGI:05009370 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:3472434-3476827 | ||||||||
| Gene Symbol | GS5, OsSCP26, SCP26, OsGS5 | ||||||||||
| DNA seq | tcaacagagtactgaatttacggcgcacttgaaattgatttggatactaccatatcaaatctatccgattggcgcctttcaatgaaaattgatgtccatgccatcttgtacctccaaagcttcatcagcagcgcatatcatctgcttgtcggaagcttctcaccatgaaggaatgcatttatcagcataagcccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgtcattccatggtactccacaaacctcccagcaacctgcaaattgaaatattttgctccatgtttcagcatgtatacaagtcaaatcacatgatgtattgatgttcagttcagcttctggtttgcagacctgcttgtcaaggtaccaagattgccaatcggtcttgatcggtaggccgagtgcttccacgcagtaccgagaactgataaccgggaccctgccgtcagcatcaccgctgctttgatgaacagagactgattcaggtaaattgtagggcattgttgcatatttttgatgtagatgcatattactaccaatatatttgaacagtaatttcaaggtttcagagaaactgtacaagaactgtagtatggaggataatGgggaagatctgaggtgaatgataaaaaaaactgaaaaatggatttaattgaacaggtctaagattaagatgatgtaaacctgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggatggaaagtactgagaaattgtaagagttgaggatttggtcactgcaaaaagaaatggatgagctcagcttcctgtcaagctaaaagaattaatggctaatacattgaaatataaaactgaaaaatctttgggctaattcacctgcaaacttgccacttccctggaagcagtccactggcatttgcatggaatgcttcttgcacatcatgcttattgaagtagtcctcagcataggatgagtagcatggatcatagcctgaaaacatcttgattctccacctgaattgttcctgtcaaaacacagaaatgcatgaatttcagaagagggtccagaatgaaactttatccttttttttgcatatggatcagttttacctggttatttgcgaagaatgcacgatcaggtgaagatgctgaagtactgtttagaaggcactttggggcataaatgttgtatatatctatctgattgtactgactgaagattatgttcattgcagcattgcaatcgtcagtccagttggagttcttgaagttgcaagttttcttgatgcgctcgtaaacttgatccgacacaattgcatggctccaggcatactcagccaaaccttttgaatcatagtaatcatcggtgagagggttgcctacctgcaagcagattttttgactgttatgttcatgcaggaaccaattttatgagtttaggatggtttaaatggaagttaatcgtgttccaattgggtgttcctgtgagcattacaactgagaaactattgttcaaaatactccctccgtttcaaattacttgtcgttttagttttgtcctaagtcgaatatacctaactttgaccatcaatttctgtaaattcatatagtttaagaacatgtgaattatatattatgaaagtatttcTtttgttcaatctaaaaacataaatcttatgagtaaaagtttatggcgtaagttgtaaggaatgtttgacttaagacaaagctaaaatgacaagcaatatgaaacggtgagagtaaacagttctttctactttctaagtttgtatatggtttcttatacatgagcacatttcacataaaagaactttttggcAaaaccataacaataattactgaaagcaattcaagaaattctcacaatgaaccccttgaggttgatatatgtgctggcccttttgtctttgttcctctcatagacaaggtcagcaagttggggcacatagtgacctgtataacagggacattgcacaggaaaagttcagattgagattcatcttgcatgatgtgcagaacaaaagctttttttgcagagcatcttctggtccacagcatgtggattgtgaaagaagcccaatgtagcccgtgaacctaccactgatgctttggtcattctttcagggacatatgttcagagatctaatggaccaatattacaatccaaaaactcaaactttgtttcaagcagagaaaatctatcagttcggatggcatcggtataatttctgtcctcaatacataaatgcaagtaacAactgaaatcattctaccttttgtttaagcaggtcatcttttactgaattctacataaatttcttctgaattctgaacaatcagatgactctgagaatattgtacttcaggaatatttgagaaggctgaaactaaaccttatattattttagagacttggttcctgatctgacactttcaccattaaaagtatgatcttttgtttgcttgctaaggggatgattgctgaactaagagctgtcatgaactcatgataggtgtcagctagttctataaagtcagtgatgatttttttcttcagtggaagtTCtggtttcagataagatggtgacactaacataattcgatacatacaatccttgagatattgtgaaagcaaacgataagaaaattttggtcaaggattgggatgctgccttccattttgattagataactggaatcttgaaaggaaggcatcttggacatgtttacatccacatgagaacaaatgagaaaaatgtctcacaccagattttgtaatatgttgcggttaggaaatcttttaatttcttgatgaaaatgaagaattctgaatgttagaccatacaaaactgattagaaaatttaccggtttcatttctgaaatgagtttacctgcatagctctcccctgagatgtagaactcattgtccttgtactgaggaaatctcttgaaccagttcaccaggaaactataagcatcctcagctgcaaaaaaaaaaaaaaggatgccacaaaattacacttctaatcattattacaaggcaatcgaaattcagatcacctgtagatggccaagcaaactagagtatcattttacaatcagcttaattacctacaaaatcatcattaagattggagaggtcagaggatgtgttggtgtaggagaagccgaccccaacaggagactccaagaacaggaggttagcctctggcaaagaccaattttatagcacaaaaaaaatgttttcagaattatactaaagacaaatgtcagtgatgttaagcatgaaaaatatttaaataattcaggaattaaaggaaacaaaataaactctgcacctttgttccagccatactggttgaactctagtgctgctccttgtcttgcaactctgagaggccctagctctgatgcagcaccatagccaatggaagagcaaccaggtcctgacaaaaccaagaacaaaattaacaaaccatttagaaaaaaaatattcctaattaaccatcaagaaagaacataaatgttgcatgcaacaatcatttatttatttatatttatgcaatatgatcagttgaaagaaaaaaaatcaataagcagctcttcagaagttcagattaaccaatgatcacaaatttaacctgaaacctcatctcaaaactaaacaaacataaacgacaagtactccacagaacaaatacccaagagaaaatatctgaatttttcatatcgcacacacaaaagaacaaacagaaactgtagtttttactaggagtaattacttacttaactaacagaatttttaaccgattaacatttaacagagcttttactGCAgcaaattctttttttttagAaaaaaaaaagcagaagcgatcgagacctccattgagccagaggagcagcggcttcttctccggcgccggcgacgcctgcgcctcgaagaaccagtagaacagcgccctgccgtgccgctcgtcgacgccgacgtagccggcgaactgcgacacggcggggctcgccggctgccccgggagccgcgccaccctgtcagcctcctgctcgccgccgccgccgccgccgccggtcgCcgccattgacgagctgaagcacaggaggaggagaagacaagagacatctcgccgcctcgccgccgccgccgccgccaccgccattgctaaCccgtggtgccgagctctagctatagctcactgttgcgccgtgtgcagcagcagcagcagcgtcgccatggatggaaatggaggaggagaagaaaaggtgaaaagtggtgcgattcttggtgaattattgcgagcttggagcttctcgtttggtgttctt
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| CDS seq | atggcggtggcggcggcggcggcggcgaggcggcgagatgtctcttgtcttctcctcctcctgtgcttcagctcgtcaatggcgGcgaccggcggcggcggcggcggcggcgagcaggaggctgacagggtggcgcggctcccggggcagccggcgagccccgccgtgtcgcagttcgccggctacgtcggcgtcgacgagcggcacggcagggcgctgttctactggttcttcgaggcgcaggcgtcgccggcgccggagaagaagccgctgctcctctggctcaatggaggacctggttgctcttccattggctatggtgctgcatcagagctagggcctctcagagttgcaagacaaggagcagcactagagttcaaccagtatggctggaacaaagaggctaacctcctgttcttggagtctcctgttggggtcggcttctcctacaccaacacatcctctgacctctccaatcttaatgatgattttgtagctgaggatgcttatagtttcctggtgaactggttcaagagatttcctcagtacaaggacaatgagttctacatctcaggggagagctatgcaggtcactatgtgccccaacttgctgaccttgtctatgagaggaacaaagacaaaagggccagcacatatatcaacctcaaggggttcattgtaggcaaccctctcaccgatgattactatgattcaaaaggtttggctgagtatgcctggagccatgcaattgtgtcggatcaagtttacgagcgcatcaagaaaacttgcaacttcaagaactccaactggactgacgattgcaatgctgcaatgaacataatcttcagtcagtacaatcagatagatatatacaacatttatgccccaaagtgccttctaaacagtacttcagcatcttcacctgatcgtgcattcttcgcaaataaccaggaacaattcaggtggagaatcaagatgttttcaggctatgatccatgctactcatcctatgctgaggactacttcaataagcatgatgtgcaagaagcattccatgcaaatgccagtggactgcttccagggaagtggcaagtttgcagtgaccaaatcctcaactcttacaatttctcagtactttccatcctacctatatactccaagctcatcaaagcagggctgagagtttggctctacagcggtgatgctgacggcagggtcccggttatcagttctcggtactgcgtggaagcactcggcctaccgatcaagaccgattggcaatcttggtaccttgacaagcaggttgctgggaggtttgtggagtaccatggaatgacaatggtgactgtcagaggggcaggtcacctggttcccctcaacaaacctgctgaagggcttatgctgataaatgcattccttcatggtgagaagcttccgacaagcagatga
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| Protein seq | MAVAAAAAARRRDVSCLLLLLCFSSSMAATGGGGGGGEQEADRVARLPGQPASPAVSQFAGYVGVDERHGRALFYWFFEAQASPAPEKKPLLLWLNGGPGCSSIGYGAASELGPLRVARQGAALEFNQYGWNKEANLLFLESPVGVGFSYTNTSSDLSNLNDDFVAEDAYSFLVNWFKRFPQYKDNEFYISGESYAGHYVPQLADLVYERNKDKRASTYINLKGFIVGNPLTDDYYDSKGLAEYAWSHAIVSDQVYERIKKTCNFKNSNWTDDCNAAMNIIFSQYNQIDIYNIYAPKCLLNSTSASSPDRAFFANNQEQFRWRIKMFSGYDPCYSSYAEDYFNKHDVQEAFHANASGLLPGKWQVCSDQILNSYNFSVLSILPIYSKLIKAGLRVWLYSGDADGRVPVISSRYCVEALGLPIKTDWQSWYLDKQVAGRFVEYHGMTMVTVRGAGHLVPLNKPAEGLMLINAFLHGEKLPTSR |
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| Function | Serine carboxypeptidase-like 26 [UniProtKB/Swiss-Prot:Q5W727] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0004260 | OsKeNa_05g0004260.01 | Chr05 | 3472434 | 3476827 | - | NAM | ||
| CDS seq | atggcggtggcggcggcggcggcggcgaggcggcgagatgtctcttgtcttctcctcctcctgtgcttcagctcgtcaatggcgGcgaccggcggcggcggcggcggcggcgagcaggaggctgacagggtggcgcggctcccggggcagccggcgagccccgccgtgtcgcagttcgccggctacgtcggcgtcgacgagcggcacggcagggcgctgttctactggttcttcgaggcgcaggcgtcgccggcgccggagaagaagccgctgctcctctggctcaatggaggacctggttgctcttccattggctatggtgctgcatcagagctagggcctctcagagttgcaagacaaggagcagcactagagttcaaccagtatggctggaacaaagaggctaacctcctgttcttggagtctcctgttggggtcggcttctcctacaccaacacatcctctgacctctccaatcttaatgatgattttgtagctgaggatgcttatagtttcctggtgaactggttcaagagatttcctcagtacaaggacaatgagttctacatctcaggggagagctatgcaggtcactatgtgccccaacttgctgaccttgtctatgagaggaacaaagacaaaagggccagcacatatatcaacctcaaggggttcattgtaggcaaccctctcaccgatgattactatgattcaaaaggtttggctgagtatgcctggagccatgcaattgtgtcggatcaagtttacgagcgcatcaagaaaacttgcaacttcaagaactccaactggactgacgattgcaatgctgcaatgaacataatcttcagtcagtacaatcagatagatatatacaacatttatgccccaaagtgccttctaaacagtacttcagcatcttcacctgatcgtgcattcttcgcaaataaccaggaacaattcaggtggagaatcaagatgttttcaggctatgatccatgctactcatcctatgctgaggactacttcaataagcatgatgtgcaagaagcattccatgcaaatgccagtggactgcttccagggaagtggcaagtttgcagtgaccaaatcctcaactcttacaatttctcagtactttccatcctacctatatactccaagctcatcaaagcagggctgagagtttggctctacagcggtgatgctgacggcagggtcccggttatcagttctcggtactgcgtggaagcactcggcctaccgatcaagaccgattggcaatcttggtaccttgacaagcaggttgctgggaggtttgtggagtaccatggaatgacaatggtgactgtcagaggggcaggtcacctggttcccctcaacaaacctgctgaagggcttatgctgataaatgcattccttcatggtgagaagcttccgacaagcagatga
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| Protein seq | MAVAAAAAARRRDVSCLLLLLCFSSSMAATGGGGGGGEQEADRVARLPGQPASPAVSQFAGYVGVDERHGRALFYWFFEAQASPAPEKKPLLLWLNGGPGCSSIGYGAASELGPLRVARQGAALEFNQYGWNKEANLLFLESPVGVGFSYTNTSSDLSNLNDDFVAEDAYSFLVNWFKRFPQYKDNEFYISGESYAGHYVPQLADLVYERNKDKRASTYINLKGFIVGNPLTDDYYDSKGLAEYAWSHAIVSDQVYERIKKTCNFKNSNWTDDCNAAMNIIFSQYNQIDIYNIYAPKCLLNSTSASSPDRAFFANNQEQFRWRIKMFSGYDPCYSSYAEDYFNKHDVQEAFHANASGLLPGKWQVCSDQILNSYNFSVLSILPIYSKLIKAGLRVWLYSGDADGRVPVISSRYCVEALGLPIKTDWQSWYLDKQVAGRFVEYHGMTMVTVRGAGHLVPLNKPAEGLMLINAFLHGEKLPTSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.180277 | 0.000000 | 0.910506 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0158500 | RBH | 0.159288 | 0.0 | 0.942394 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06660 | RBH | 0.102435 | 0.0 | 0.230689 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0158500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004220 | RBH | 0.418556 | 1.373673 | 1.756830 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015130 | RBH | 0.0 | 0.0 | 0.442504 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004170 | RBH | 2.160008 | 8.610838 | 3.983906 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004250 | RBH | 0.000000 | 0.264401 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004290 | RBH | 0.0 | 3.912861 | 4.798552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0049900 | RBH | 7.4828025 | 15.849273 | 0.235324 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004070 | RBH | 0.159663 | 0.780491 | 0.167458 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0050900 | RBH | 6.2643075 | 1.2506705 | 9.135017 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004220 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004130 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004220 | RBH | 0.0 | 3.573425 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004240 | RBH | 0.468223 | 0.000000 | 0.905315 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004290 | RBH | 0.146920 | 3.125211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004160 | RBH | 0.509733 | 2.521054 | 1.623824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004370 | RBH | 1.119192 | 2.247323 | 3.122118 |
