Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0002530 | OGI:05005890 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:2074510-2076466 | ||||||||
| Gene Symbol | prx66 | ||||||||||
| DNA seq | atggtgatggtgaagcttaacgcggcggtggccgccgccgccgttgtgctgtctctgttggtggtggtcgccgtgcatccggcggcggccgacgccggcggcgattggtacggcaagaagagcatcgaggagacggtgaggaaggaggtggagaaggccatcaagcacaatcccggcgtgggtgccgcccttgtccgtttggtgttccatgactgctgggtcaacgtaagtatactaaccaccatttacttttttttttccgagtacatgaatgacatacagacacatacacatagatcaggatcctctgcagtcgaagtcacgtgtctctgtcactggcatgtggatccaatgatccctggacccacatgtcagtgacaaatataccgtgtattttgattgaagaggatctcaatcccacacgtaatatgttacacatattacatttgcacgtacatatgtgctttaaatatattgtctttaattaacacactctcaaaaagatttggatctgctaaatgcataagtaaacctgaagtccaatatgtatgcagcttagcttgcaatataatgcaaatttcggtggagctagataggccttatggcatttttagtttggcttttttttcttttgaattggggatcatgtaagagaacttgtcatgcttgtctgcattagctttttttttttttggggggggggggtctaagttgatagtaagtagtaataacttTTCttttttttttcacctgaaaatgataattagataccttttaaattgttggatgatgttgatgtggtgcttgaaaagtgacttgtaatgagtttggagaaataaccacatgcatgaacaatactataacatgaatggatatataataacaaaaaaaaagcagggctgtgatacctttttaaattgtgagatgatgttgatatggtgtttcaaaagtgattcacttactgagttaatttgggcaaatagctagcttgatcttaaaatataacaatttttaactataaatttgatttgaatacatttttaaattgttaagatggagcgcataactaataaagaattttttcttgaaaaatgcagggttgtgatggatcggtgctcttggacaagacgccgtacagcagcagcacggagaaggcggcggcgaacaacatcggcctggacggcttcgacgtcatcgacgccatcaaatccaagctgggcgccgccgtctcctgcgccgacatcgtggtgctcgccggccgcgacgcctccgccatcctcagcggcggcaggatcacctacgacgtcggcacgggccgcaaggacggcgtcgtctcctccgccgccgccgccgacgccgtcctcccggagtccaccttcgacttcgcccagctcaaggacaacttcgccagcaaggggctcacccagggggagctcgtcatcctctccggcgcccactccatcggcgtcgcccacctctcctccttccacgaccgcctcgccgccgccaccgccacgcccatagacgccacgtacgcgtcggcgctcgccgccgacgtcgaacggcagaagggtgtccagcgcacggacaacccggcggagaagaacaacatccgcgacatgggcgcggcgttccagagcgccgccgggtacgacgccgccggcgtggacacggcggcggtgggggcgctggacaacagctactaccacaacaacctgcagaaccgggtgctgttcaagtcggactgggtgctgcgcaccgacggcgacgccgccgccgacctcgccgagtacagggacaacgccaccaagtgggacgtggacttcgccgccgccatggccaagctcagcaagctccccgccgagggcacccacttcgagatcaggaagacttgcagatgcaccaaccagaactactactagtagtagtagtaactagtcaacgatcgagtcagcgg
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| CDS seq | atggtgatggtgaagcttaacgcggcggtggccgccgccgccgttgtgctgtctctgttggtggtggtcgccgtgcatccggcggcggccgacgccggcggcgattggtacggcaagaagagcatcgaggagacggtgaggaaggaggtggagaaggccatcaagcacaatcccggcgtgggtgccgcccttgtccgtttggtgttccatgactgctgggtcaacaagggtgtccagcgcacggacaacccggcggagaagaacaacatccgcgacatgggcgcggcgttccagagcgccgccgggtacgacgccgccggcgtggacacggcggcggtgggggcgctggacaacagctactaccacaacaacctgcagaaccgggtgctgttcaagtcggactgggtgctgcgcaccgacggcgacgccgccgccgacctcgccgagtacagggacaacgccaccaagtgggacgtggacttcgccgccgccatggccaagctcagcaagctccccgccgagggcacccacttcgagatcaggaagacttgcagatgcaccaaccagaactactactag
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| Protein seq | MVMVKLNAAVAAAAVVLSLLVVVAVHPAAADAGGDWYGKKSIEETVRKEVEKAIKHNPGVGAALVRLVFHDCWVNKGVQRTDNPAEKNNIRDMGAAFQSAAGYDAAGVDTAAVGALDNSYYHNNLQNRVLFKSDWVLRTDGDAAADLAEYRDNATKWDVDFAAAMAKLSKLPAEGTHFEIRKTCRCTNQNYY |
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| Function | Peroxidase (Fragment) [UniProtKB/Swiss-Prot:P16147] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0002530 | OsKeNa_05g0002530.01 | Chr05 | 2074510 | 2076431 | + | NAM | ||
| CDS seq | atggtgatggtgaagcttaacgcggcggtggccgccgccgccgttgtgctgtctctgttggtggtggtcgccgtgcatccggcggcggccgacgccggcggcgattggtacggcaagaagagcatcgaggagacggtgaggaaggaggtggagaaggccatcaagcacaatcccggcgtgggtgccgcccttgtccgtttggtgttccatgactgctgggtcaacaagggtgtccagcgcacggacaacccggcggagaagaacaacatccgcgacatgggcgcggcgttccagagcgccgccgggtacgacgccgccggcgtggacacggcggcggtgggggcgctggacaacagctactaccacaacaacctgcagaaccgggtgctgttcaagtcggactgggtgctgcgcaccgacggcgacgccgccgccgacctcgccgagtacagggacaacgccaccaagtgggacgtggacttcgccgccgccatggccaagctcagcaagctccccgccgagggcacccacttcgagatcaggaagacttgcagatgcaccaaccagaactactactag
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| Protein seq | MVMVKLNAAVAAAAVVLSLLVVVAVHPAAADAGGDWYGKKSIEETVRKEVEKAIKHNPGVGAALVRLVFHDCWVNKGVQRTDNPAEKNNIRDMGAAFQSAAGYDAAGVDTAAVGALDNSYYHNNLQNRVLFKSDWVLRTDGDAAADLAEYRDNATKWDVDFAAAMAKLSKLPAEGTHFEIRKTCRCTNQNYY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0002530 | OsKeNa_05g0002530.02 | Chr05 | 2076213 | 2076466 | + | IsoSeq | ||
| CDS seq | accacaacaacctgcagaaccgggtgctgttcaagtcggactgggtgctgcgcaccgacggcgacgccgccgccgacctcgccgagtacagggacaacgccaccaagtgggacgtggacttcgccgccgccatggccaagctcagcaagctccccgccgagggcacccacttcgagatcaggaagacttgcagatgcaccaaccagaactactactagtagtagtagt
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| Protein seq | TTTTCRTGCCSSRTGCCAPTATPPPTSPSTGTTPPSGTWTSPPPWPSSASSPPRAPTSRSGRLADAPTRTTTSSSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 61.182854 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0134700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04410 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0134700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002510 | SBH | 0.0 | 18.434811 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013120 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002540 | SBH | 0.000000 | 94.871918 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002480 | RBH | 0.0 | 0.807483 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002550 | RBH | 0.000000 | 67.884071 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0030700 | RBH | 36.904802 | 47.4404735 | 9.6195865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002500 | SBH | 0.000000 | 10.882762 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030000 | RBH | 22.812691 | 34.709117 | 1.7404315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002490 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002410 | SBH | 0.0 | 25.503883 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002520 | SBH | 0.0 | 17.304592 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002540 | SBH | 0.000000 | 7.313235 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002560 | SBH | 0.000000 | 78.747391 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002400 | RBH | 0.000000 | 23.176012 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002590 | SBH | 0.000000 | 189.144211 | 0.000000 |
