Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0002140 | OGI:05004920 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:1740026-1743178 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaaggctagtgaaagatgagagccctgaactgaaaggcagaagcactatacgtacgtgtcatataattcctagtgtagtagtttttttatcattgctcaattttgtttgcttcccctgaataatggatcgagcttttgctcatcctgactttatacctcacgaggacaacagagagtattactttttgcaggatgattatatttttgtttttatcataccgacgattaggtgcccaattatatacctagtactccctccgtccctaaatataaaaaaatttgatagaatgtgacacatcatgtccatatatattgtactagaatgtgtcacatcccactaaaatcctttatatttagggatggagggagtaggttttttcttcgcaaataggatttaataaattgtgatttctttatattgtgttggtgcttattagtttttgcttgaattttgctaaattttggtgtgttcacgtgaaccctttggtgggtcgcgtttgagcgaatttgtggaataattggatgtaactcgttgagcaaagatagggttatatatcaccttcgtcctaaaatataagcatttttatgtataaatttagataaacagtgatccagattcaatgattatattttaagatggagggagtaggTttttttattacactgacaattacacaattaggtaactcactatataatacttttttcatagcaattgtatatgtttttattacataaaaagcaggcacaaaacatcacacacgcatacaaacactcacacataagggtggccattcagtctgaccgaagaactcgatctaaatctttggtcttttcataaatttagtgatttaaaattaaagaccaaattgcattgcaaaattttgtttaagactaagtagttttgtttcatttagtttgggtcggtcttcgattatgaccgagatatatacctgaattttgatagggaaggggagaaaagaagcctatgtgggcctagaagattataatttgagatcgatggacaaaactataattgaagaagaataggcactttggtggtggcaagtatgacaaccatggcagcaaggcggtgcttgagctcaaggagagtagcggggccacaccttagcaccgcctacctccatagcaaccttgttgacgagctgcggcccttcatctcctttgcctttgccgccaccatcgaatgcgaccggaggtgcgcagtggcgtatgcattggtcagatgtggtcggtggtgaaggagggcctcattggtttgctataagcctaagtgaccgccaacgaaaatagacatattttcgctggcggctggtaTaacgcggccgccagcgaagatctaTttttgctggcggtcgttgccccttaccccctcgttacaattttgctggcggttttggcatttttccgccagtgaaaatcatagaccaacgccatgaaaaatcatttttctagtagtgtgattataagataatttaaacgtaatttctatttagcattggcttttaagtcactatggacaaatatatgaaaattttatttgtatttacatttaggccatataaaattagtttcgcctatctaacactctaaaataactttatatgaaagagtgatcagttacaaagttatagatctcatcgtgatctacaacttttatacatcagagatatattgtaaagagtgaagtgcacaagcgatccctaaacttgtgcgggtgtgtcatctaggtccctaaactctcaaaatgcattttcgggtcctcaaacttgttttggggtgtcatataggtccaaacgagctccaaccccttccatacgctgatgtggcatgttacaatagttcatacgtgttagttggacccacgtgtcagtcacatagaaaaaaatataagtagaaaaatatattttctcctctctaccttaggatttttatcttttttctatctacctaagaggagaaaatatggtttttaattttattttttatatatgcttgacatgtggattccactgacatgtaggcgtcactgtggcattgccacgtcagcgaatcgagtgggttagaacccgtcatggcaagttcagggatctaaaaatgcattttaggagttcagggatctagatgacaccactgcacaagtttagggaccgcctatgtacttcactctattgtaaatatggctataaaatttataacgaatatttgaacatctaaatgatataaaatgaaaaaaattatcaactacaaagttatagatttcgtcgagatctataattttcatataaagtttggctttatctgacttatatgaaatatttaaaaactttataactatcatatgataaactatatggcaattttgcatttagacccatcacgtcaaaaaattgccctctgaaaggatgttttctaaaaaagctctcccagagtgtgttaggggtgtagatatgtaattatttgaaacaaaaaattatttatgtaaatattttaataaataataaaaattaataatacaaaaacgaattcttctgtctattcataagaaaaggcccaatttatccaggctatacattgggcttttgtactgtgcaaaaactatcccatgcatgggccacagcccactcttgctttcatattggcccacttgagaattctcactctttttcttatggaaaaagtacaccgaaggtctcttaacttgtcatcgagttacaaaatcgtccccccaccgcaaaaccagatatcgaacgtctcttaactaatcaaaaccggtcataatagattctttggtggttttgatccgattttgtcctacgtggcggctaagtcagcgtgggacccacgggtgtcttccccctctcttgccctttacacgggtgatgagcgtgcacgggacggagaggctaggcacggcgcagccggcggccgacgggaaagaattcggcggcggcgcgctccaccgcgtgcgcccccgtcgcctaccgcgctcgcagccgccactggcgagcaaggcgaaggtactggggcggctggcgttcccggcgctcctggcggaggcgtcagactacattgctgcgctggagatgcaggtgagcgccatggcggcgctcgcgcaggcactctag
More
|
||||||||||
| CDS seq | atggcaaggctagtgaaagatgagagccctgaactgaaaggcagaagcactatacgcacggcgcagccggcggccgacgggaaagaattcggcggcggcgcgctccaccgcgtgcgcccccgtcgcctaccgcgctcgcagccgccactggcgagcaaggcgaaggtactggggcggctggcgttcccggcgctcctggcggaggcgtcagactacattgctgcgctggagatgcaggtgagcgccatggcggcgctcgcgcaggcactctag |
||||||||||
| Protein seq | MARLVKDESPELKGRSTIRTAQPAADGKEFGGGALHRVRPRRLPRSQPPLASKAKVLGRLAFPALLAEASDYIAALEMQVSAMAALAQAL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0002140 | OsKeNa_05g0002140.01 | Chr05 | 1740026 | 1743178 | + | NAM | ||
| CDS seq | atggcaaggctagtgaaagatgagagccctgaactgaaaggcagaagcactatacgcacggcgcagccggcggccgacgggaaagaattcggcggcggcgcgctccaccgcgtgcgcccccgtcgcctaccgcgctcgcagccgccactggcgagcaaggcgaaggtactggggcggctggcgttcccggcgctcctggcggaggcgtcagactacattgctgcgctggagatgcaggtgagcgccatggcggcgctcgcgcaggcactctag
More
|
|||||||
| Protein seq | MARLVKDESPELKGRSTIRTAQPAADGKEFGGGALHRVRPRRLPRSQPPLASKAKVLGRLAFPALLAEASDYIAALEMQVSAMAALAQAL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0128600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0128600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002120 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0025900 | RBH | 0.57275 | 0.700982 | 1.146152 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0026400 | RBH | 0.6901315 | 0.460351 | 1.825433 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002180 | RBH | 0.0 | 0.0 | 0.0 |
