Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0029870 | OGI:01011440 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:31913560-31917505 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaagttttctcttgtacgtagatgtccggccgcaagtccgcgaattatgaccagcttcgtggcatgtgtggcaaaacctacgaggaaagggcacttcatcctcatgatcaatgacttggttttcttcttcaacggactcacactcattggttgtgttcttcttctcaatccctacttcttttcttcttttcaggctggcaacctcaccacccgatttatacctattcaccttaggtcttcctctgcttctctttttcaacggtggaagtatatcagcagtcaaatttccaccctcgtcctcacttggcacgtcatactcactgtcctcatcacctccaccaacatcttcgtttccatcttcagttaatacagtagaccttgatttatgcctagctgctcgcttcggagcttctctactattgtcaccatcatccaaagataactgatttttcatgtcctccaaaagcttattcatgactctcattgccatcttaaatgtctgcacatctttgttagcaatcttagccacctccacagtcttcctattcagcattacatgtctgtaactcctcgattgtgaagcatcgacatcatctttgtacccatgtagatgaggtggtatagtatcccgagcatccttcgtccatcttttcagtatatacctctctggaatccttgacaaaccatactgaacaagtacctaaagggacaaaccaatgcattacttcaaaaagccaaacactaccgaacatatagtacgacccaatgaaaataaatgtttagacagtagaagaaacaaatacccttaagatgtggctgcacagaatccccttatgctcaaacatcttgcaaacgcatgaaaattcctctctttccaaatcacaagacacctgatattccttcctaaggaatgattcttgcgagttcatccgtacaacttgcacggtgctttcgtcctccccaggtttcaccatgtaagatagactatcggttaactcctcagagaacaattggaaaacagccctagtatatacttgggatgcgtgaatctctatcggtgaccttgttttaatttcaaccttgtcctgcaccaagcgacaccaaatgttgattacacatatccataaaaagaggtcaacaaacctatcacagtggatacttacattactggtttggaattcctccgagtcctctttttgcagcttctcattgaaaaaccggtcgtacctcttaacaaagccattcatagagctagagggtgacacaaacatcttaaacacatggtttgcagactcacttctctgtgtagtagtcatcccagcaaagaacctatgggaaaaatatacaaatgcccatttacgccttatgtcccatatgtgacgcaagtaaacacttttttccagattataatctctaatcagtttgtgccaagccgcaacaaactcctcctctgttagtgtctgcgtaagaaccttatgaaatgctttcttgaatgtatgacgcttggagtatatgttccccataaattcctttgctttcttcagtacatgccacttgcacacacgatggattgtattgggaaatactgttctaatggcagctgccatggaaggacaattgtctgcaaaattaaggacaataataagcatccaatgaataacccatcatatacttaaaataagtaaagtataacgaattcattccaaattataaattcggccaaatactcacatacctgttaatattccaataggaaccttcccattcatgcactctttgaatgtattgaataaccatgtaaatgattcttcagtctcttctctaagcagggcacaaccaaagaaggtgctctgaaagtgattgtttacaccaacaaatggtgcaaagggcatattatacttgtttgttttgtaggtagtatcaaatgtgatgacatcaccaaaatgctcaaagttcaatctggacacagcatgagaccaaaatatgttcttcacacggcaagcctcgtcaacttgtatactataaaagaaattcttgctccttttttgcaaatccttcaagacatcaagtgttttttgtatgtcatcgctgctctcatcccgcctaattgcataagctagcctatccatagcttttctcgtgaatggaaccatggaaggtccgccatgcatcccagacaacataccatacatatttgtaagactcatactactgtctaccatctcttcaataataccacgagtcccctcatctatttgattgtgcgactgataattcttagtaactcctacactttttttcataggatggtagtgcgcagaaacaacctttgttactgaccagccactaccagctccagacctatttatcttcatcattgttgggcacccaattcgaacggaaggcttcttggtttttgggttcctcccctgcataaaagatttcgaaattaacacatagtacgtcaagtctttatttaggtaaatttctgctactaagatattgttacataatgtatgtacctggtgagaacaacatatttgccgcattgttctctgctttttagtattcttgcgatctttgtccagtcgtatcccaaatcctttactaacagcataaacattataaaaattataggcatccctctcagtcttaaatctttgtcccagcatcggagtaagaatttgaggatcagcatactcaggaggtatgacagcactgctatcaacattatctaccaccattctgaaaagaaaatgtacaatcagttttcagaaaataccaccaatatcctggctaaaaaaaatcgtaaaaatccgtaacatgctgatacaaacctttccatcggtatcccagctccttctttttcatatgggtttccttctgtccaatccagtgaagggaccaaatttctgtattggagacactatatttaaaaatagcatatactactactaactgaaaatgtagtttacaaaaaacaacctaatttataatcagtacttaatgcaaatttaaaaaaaatatatgttgtactactaacaaaaaaatatggggagctttgtgtatactcattttttaaaatggaggggttctttctgatttatgttgaatgatagtatgtactgaatttttctatgggttacgtactgaatttctctagacgatagcatatactgcattttccacatgtatactaaatctttccatagtgattcgtagtatgaactttgatacgcaccagtatttactgaatttttcacatatatactgaatttttctatgggaggctatgtactgaactttgttatacgacagcatatagtatgttctgaattttctgtgcaacatactgaactcctctgcaatatagcacatactgaacttttctatgtgatacatactgaactttcctagaagatagcatatactgaactttctcatgtgacacatactgaacatttctatgtagtatatactgctttaaagtgaatgctcagctgacacctagccatgcacataccttgtctctggaattccatgccctgaatcatgtgagccaacccgcgacggcacgtcctcctccattgctacacggcttcataacacaatcaagatgtgtcagtatctggctaccatttacagagttttaaattcacgagagttttaaattcacggaagctacgatccaaccttgactgaccaccatccggttgtgaatcatggacagattgactaataccatctactatgtccatggtagggttgcgctcgtccataagaatttccctgaattgatgatttagaattgctcaagttcacacggcgaaattcagagaaaaaaaaccagcggcacatactgaaataaatcactgaaacagaacaacataccttgatccatccgtaccatcagaaggtctgtggttcttcacttgtttatccat
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| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagacaagaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccgatggaaagaatggtggtagataatgttgatagcagtgctgtcatacctcctgagtatgctgatcctcaaattcttactccgatgctgggacaaagatttaagactgagagggatgcctataatttttataatgtttatgctgttagtaaaggatttgggatacgactggacaaagatcgcaagaatactaaaaagcagagaacaatgcggcaaatatgttgttctcaccaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcccaacaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcactaccatcctatgaaaaaaagtgtaggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtagacagtagtatgagtcttacaaatatgtatggtatgttgtctgggatgcatggcggaccttccatgctgcaaaaagaggactcggaggaattccaaaccagtaatgtaagtatccactgtgataggtttgttgacctctttttatggatatgtgtaatcaacatttggtgtcgcttggtgcaggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaattgttctctgaggagttaaccgatagtctatcttacatggtgaaacctggggaggacgaaagcaccgtgcaagttgtacggatgaactcgcaagaatcattccttaggaaggaatatcaggtgtcttgtgatttggaaagagaggaattttcatgcgtttgcaagatgtttgagcataaggggattctgtgcagccacatcttaagggtacttgttcagtatggtttgtcaaggattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttacagacatgtaatgctgaataggaagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatggcaatgagagtcatgaataagcttttggaggacatgaaaaatcagttatctttggatgatggtgacaatagtagagaagctccgaagcgagcagctaggcataaatcaaggtctactgtattaactgaagatggaaacgaagatgttggtggaggtgatgaggacagtgagtatgacgtgccaagtgaggacgagggtggaaatttgactgctgatatacttccaccgttgaaaaagagaagcagaggaagacctaaggtgaataggtataaatcgggtggtgaggttgccagcctgaaaagaagaaaagaagtagggattgagaagaagaacacaaccaatgagtgtgagtccgttgaagaagaaaaccaagtcattgatcatgaggatgaagtgccctttcctcgtaggttttgccacacatgccacgaagctggtcataattcgcggacttgcggccggacatctacgtacaagagaaaactttag
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRKNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPTMMKINRSGAGSGWSVTKVVSAHYHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMVDSSMSLTNMYGMLSGMHGGPSMLQKEDSEEFQTSNVSIHCDRFVDLFLWICVINIWCRLVQDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMRVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0029870 | OsKeNa_04g0029870.01 | Chr04 | 31913560 | 31917505 | - | NAM | ||
| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagacaagaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccgatggaaagaatggtggtagataatgttgatagcagtgctgtcatacctcctgagtatgctgatcctcaaattcttactccgatgctgggacaaagatttaagactgagagggatgcctataatttttataatgtttatgctgttagtaaaggatttgggatacgactggacaaagatcgcaagaatactaaaaagcagagaacaatgcggcaaatatgttgttctcaccaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcccaacaatgatgaagataaataggtctggagctggtagtggctggtcagtaacaaaggttgtttctgcgcactaccatcctatgaaaaaaagtgtaggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtagacagtagtatgagtcttacaaatatgtatggtatgttgtctgggatgcatggcggaccttccatgctgcaaaaagaggactcggaggaattccaaaccagtaatgtaagtatccactgtgataggtttgttgacctctttttatggatatgtgtaatcaacatttggtgtcgcttggtgcaggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaattgttctctgaggagttaaccgatagtctatcttacatggtgaaacctggggaggacgaaagcaccgtgcaagttgtacggatgaactcgcaagaatcattccttaggaaggaatatcaggtgtcttgtgatttggaaagagaggaattttcatgcgtttgcaagatgtttgagcataaggggattctgtgcagccacatcttaagggtacttgttcagtatggtttgtcaaggattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttacagacatgtaatgctgaataggaagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatggcaatgagagtcatgaataagcttttggaggacatgaaaaatcagttatctttggatgatggtgacaatagtagagaagctccgaagcgagcagctaggcataaatcaaggtctactgtattaactgaagatggaaacgaagatgttggtggaggtgatgaggacagtgagtatgacgtgccaagtgaggacgagggtggaaatttgactgctgatatacttccaccgttgaaaaagagaagcagaggaagacctaaggtgaataggtataaatcgggtggtgaggttgccagcctgaaaagaagaaaagaagtagggattgagaagaagaacacaaccaatgagtgtgagtccgttgaagaagaaaaccaagtcattgatcatgaggatgaagtgccctttcctcgtaggttttgccacacatgccacgaagctggtcataattcgcggacttgcggccggacatctacgtacaagagaaaactttag
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRKNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPTMMKINRSGAGSGWSVTKVVSAHYHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMVDSSMSLTNMYGMLSGMHGGPSMLQKEDSEEFQTSNVSIHCDRFVDLFLWICVINIWCRLVQDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMRVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0354200 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28580 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0354200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029090 | SBH | 0.0 | 0.0 | 0.304615 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013200 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009970 | SBH | 0.0 | 0.0 | 1.327690 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009640 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009770 | RBH | 0.0 | 0.0 | 6.309835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0343600 | SBH | 0.9267115 | 3.4564265 | 3.211076 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013840 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0339800 | SBH | 1.862026 | 4.7070445 | 5.3784225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013160 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009750 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028570 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011170 | SBH | 0.0 | 0.0 | 0.0 |
