Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0026840 | OGI:04091340 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:29486550-29490891 | ||||||||
| Gene Symbol | OsPP2C44, PP2C44, OsPP69 | ||||||||||
| DNA seq | gccatgacacatgactgggactactaccatttcacaactcacagccaaaaccaagcaacaatgtatgtacacaacggcaacaacctgcacgccccgttcgattgataaaacagtttatgctggtgtatgtatgcacagacgaatcaccaccgcccaccaccaccctgcacacactcactactcgctactgaacccacaagtttgaacatctccagttttgtccttgctaacatatctcatctctagggtctgttcacaacagctacatactataggtaaaccatcttttttcagcaccaccacacaaattcaatcggaacgaagagaaacgcagagacaatgttgcgaagcgggtgttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcgcttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcgacggcttcctggttcttcattacctgagttgagcaagatcataagatttagcaactgatttgtggatgtactttgttaagggcggaatactcaaatatagattgatgactaatcatggagatcacgaggatcatgcattttgccacatggtaagtgcacaagaaaccatgatatgtacaggtcctaactaaacaatagatatttttgctccgagaggaagcatggtaaaaacaagcagtatacaaggacagaagaagcgaaaggaaaatggagatgcttataaactcttagcattaaaaagacaagattaatgtaggcaagagttttaaggaattatagtaccaaccttccatagtccatcgctggcaagtatgacgaactctatgcttgaatttattggtacatgcctaacatcaggttctgaactcaagtgcgccttgaggctttggtccccaaaggccctcgcaacagcaagctgaccatttacccggggaacatcacctgtaaacaggtcatacaataaattattaagtaacatgaacttttttattttctgaccaagaacagtgatgagacagctgaacaacaaaaatcataccaggaaatgttgttacaaagccaccctgcttctcaatcctctgcctttcattagttgtatgaggttcatggtcaacagtgagctgattagcagcacctctttcacacacaacagctcttgaatcacctacatttgctacccacatatcctttccatcaacgacaatagcagtaactgctgttgaaccaccaggtccaagttgtttggcattctccaaaatatatttgtttgtagagcggtatgcattcttaattgcttcctgagggttagtccagaagataggctgcaacatcagaaaaggcaaatggtgagcaaaagatacatttgtaaggtaaatggaaggaatgaacgtcaataacacatattcgtagttttgcaggcacataaaaaaaaccaaaaaagtaatgcttacctctttcagtatgttgcagaaaaggttagctttcaagtaacttggaacactgtctcccaagtgaccatcaaaaatggcaaagagaccaagctcatggctcttgtcatacttgtactctgccacatggtagtcctccatgtcatgcccagatttcccttccaccaagtggaatccatgagtcactttgttgcttgactgcttactcctccccttgccggtatcggtagatgacgaattaaggcatgttgcactctttaagaccatacacaaatcaggcaaaccaaattaatgtcagtacacactgatgataacccaaacaagaccaatgaagaaaggaggtgtgaggattccatgaaaatggcaccaaaatcagcatgcacaagttctcaaaaacttaaagaaaaaaatagttcactgtacaaacaaggttgaaggttgtaatcgtatcaaatagcagcattcacagtattgttcgtgttaatgaataagaacagaaaaaactagtcttgtggaacaccattttccttggctttgaactttcatttgaaattgtgggcaaatcagagtttttttggtaaacaagttatgaccttgataaatcagcaatgtctagttgtctctatgtatgacaaataacatttttgccgctgatagacaaatgtaagaaatctcaaaccatgatttaaaaaaggagaataatccatccctgaaaataatagtaatagactattcataggaacaggaaagttccattttcatcaatgaagactgcggattgtgattgctgagaatagtaatataacattttcaccatttttgtagttctaaaacatagaatgtattttgtcagaaaatgttttgcacaaattgacagaaatagtcaatagcatatttttttttagataaaagcacatggtccagtactagccttcctattgccaaactattcggagaacatcactatctgtaaagtggtataatgtatgcaaggagcagctatattattccgaaacaatattctgcaaaacatttattagatgaacaacaggacattttctaaggtccaagtggggggccacggcatagaactgaaaaacaaacaagaataaaatcacaatttgcaggtaatattagacttcataggcgatagacgagtagtattcatccttttttgtttccaaaggtgatgtaatctcctaacttagtagacaacgcacatgatcaaatcctgaggatcatgccgataatcccccaacctctgctcgatatctgcaatagggatacttcaagagctactttacgggtggtccaggtctgaactcataacactcgtaagcatgtgaaaacaggtgtctagcaccgcaagttactgactcttgcacgtcattaaccacagtgtaatcaaatcctgagaaaccaattatcaactacacacaccaagaggcaactttcccaaggcaggcaagaacagatgacagttttctttcttgtttgggttcataaacagacagaaacacataacattaaaatataaaaacaagggcactaatatcataatctgattgcttgaagacaactaccgccatcattccgataaccacagataaggctaatgatttgcatgaactggtctggtttggtacagcaaggttacaagcttaagtagggagcaatgctatacgtactaaatttttcttactaaacttttactaacaatcatctcaatcgtttgatttaagtagatggaagttacaaaaaaatctagatgcactcatagcataacagtgttagtaaaaatttagtaagaaaaagttactaggtatatccttttccttaagtaggtgcacagcaaggctccaagaaagtacaagttgcttacggctggcacggcagcatgggcgcacgcgtactaagtcaaaaaggaggaagcggagggttgcacaagtccgactttgcttggaagttgcaaccccatacttggagatcctgtgactccaagttaacaacttgcactatgtttagcttttaattaacctcctccggtaaaaacaaaatactatgatttttcccctaaaggtaatgattattttttttcctaatggtaattaattattactacctattgtgacctcgagcgctcaactgagtggatgtttcgataaacacggatattaatcagatgctaaaaaaacgaagctcctttcaatcaggcaggcaccagcacatcaaagagggtaaacgaagttaaaaaaaatcaaaaattttgctacgcagccaagaattgaaccgcatgaagacaactcaaaatagtcaaattaaagaaaaaaaaggtaggaaaaaaaagaagaggcgcacgcaggcaggcagggaaacatacccggatcatgttgagtatgtcgggccgcttcttgcccccgcaggccgaagacgaggaggaggtgccggcggcggaggaggagggggagcatgacgccgacgacgacgccgactgccgctccatccgcccgaccatgtcctgtccaatcaccacggacacagaccagctcgctcgctcgctccccactcccgacgacgacgacgacacagcagcagcagcgcacggggatgagagatcttctggggggaggaatttctatcccttggtttgcttctcctgatccgattcttccaccaccagccgagcccgaggcctctcgcggcgcggacacctgtggcggtagcgtgaggagaaatggaatggaatggaggagaagaagaagagaaaaaagaagttggagaagaagaagagaggagagggaggaggagtcgttgcggttggggtttgatgattgtgttgtggtggagtggaagagccgct
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| CDS seq | atggtcgggcggatggagcggcagtcggcgtcgtcgtcggcgtcatgctccccctcctcctccgccgccggcacctcctcctcgtcttcggcctgcgggggcaagaagcggcccgacatactcaacatgatccggagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtcaagcaacaaagtgactcatggattccacttggtggaagggaaatctgggcatgacatggaggactaccatgtggcagagtacaagtatgacaagagccatgagcttggtctctttgccatttttgatggtcacttgggagacagtgttccaagttacttgaaagctaaccttttctgcaacatactgaaagagcctatcttctggactaaccctcaggaagcaattaagaatgcataccgctctacaaacaaatatattttggagaatgccaaacaacttggacctggtggttcaacagcagttactgctattgtcgttgatggaaaggatatgtgggtagcaaatgtaggtgattcaagagctgttgtgtgtgaaagaggtgctgctaatcagctcactgttgaccatgaacctcatacaactaatgaaaggcagaggattgagaagcagggtggctttgtaacaacatttcctggtgatgttccccgggtaaatggtcagcttgctgttgcgagggcctttggggaccaaagcctcaaggcgcacttgagttcagaacctgatgttaggcatgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaaggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcagcagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgcatcgtcatccgattccgctgc
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| Protein seq | MVGRMERQSASSSASCSPSSSAAGTSSSSSACGGKKRPDILNMIRSATCLNSSSTDTGKGRSKQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENAKQLGPGGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRFRC |
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| Function | Probable protein phosphatase 2C 44 [UniProtKB/Swiss-Prot:Q0JAA0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0026840 | OsKeNa_04g0026840.01 | Chr04 | 29486550 | 29490891 | - | NAM | ||
| CDS seq | atggtcgggcggatggagcggcagtcggcgtcgtcgtcggcgtcatgctccccctcctcctccgccgccggcacctcctcctcgtcttcggcctgcgggggcaagaagcggcccgacatactcaacatgatccggagtgcaacatgccttaattcgtcatctaccgataccggcaaggggaggagtaagcagtcaagcaacaaagtgactcatggattccacttggtggaagggaaatctgggcatgacatggaggactaccatgtggcagagtacaagtatgacaagagccatgagcttggtctctttgccatttttgatggtcacttgggagacagtgttccaagttacttgaaagctaaccttttctgcaacatactgaaagagcctatcttctggactaaccctcaggaagcaattaagaatgcataccgctctacaaacaaatatattttggagaatgccaaacaacttggacctggtggttcaacagcagttactgctattgtcgttgatggaaaggatatgtgggtagcaaatgtaggtgattcaagagctgttgtgtgtgaaagaggtgctgctaatcagctcactgttgaccatgaacctcatacaactaatgaaaggcagaggattgagaagcagggtggctttgtaacaacatttcctggtgatgttccccgggtaaatggtcagcttgctgttgcgagggcctttggggaccaaagcctcaaggcgcacttgagttcagaacctgatgttaggcatgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaaggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcagcagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgcatcgtcatccgattccgctgc
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| Protein seq | MVGRMERQSASSSASCSPSSSAAGTSSSSSACGGKKRPDILNMIRSATCLNSSSTDTGKGRSKQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENAKQLGPGGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRFRC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.796601 | 3.151054 | 3.018547 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0609600 | RBH | 3.476117 | 1.700595 | 3.691061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52000 | RBH | 2.228341 | 1.084241 | 0.900681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0609600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026050 | RBH | 1.429370 | 15.945376 | 8.620425 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026580 | RBH | 4.825513 | 9.221342 | 7.897162 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026280 | RBH | 0.531133 | 0.318320 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026550 | RBH | 14.999673 | 12.780928 | 13.178878 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0487100 | RBH | 8.5188975 | 38.849432 | 25.5305065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025320 | RBH | 0.666888 | 1.742690 | 1.603758 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0490600 | RBH | 10.3147335 | 45.890934 | 12.680936 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025800 | RBH | 0.407417 | 0.145474 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025620 | RBH | 1.010887 | 10.783085 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025680 | RBH | 8.276446 | 4.046721 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026100 | RBH | 1.366043 | 0.908712 | 1.066285 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026250 | RBH | 0.520131 | 6.553954 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025520 | RBH | 1.060089 | 0.522733 | 0.929518 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025410 | RBH | 2.745647 | 24.614693 | 11.968143 |
