Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0025200 | OGI:04087730 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:28229504-28230627 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgcagataaatgttgcagagataaccattgcaggtgatattgctagcagagtagcagtactatcatccacttgctagtaaattacagttttgtcaaattactcaggatcagaatctttgtcgaccacaattggggagcaagacattcggatcctctcaattggagctaaattgcagatcttattctcatcactttacaaaatgtacaaagcgaaaaagctgcagccatccacttgcaagttgcaaaccaggatctctgactcggaattttttcccaaatgctatccatttccagctagctagggcactaaaatctagcaagcaaacgagaaatttaaccatctcaggcttatggtttggtcggtttctctgttcctcttctagctctagccccccggaatctccggagcgcgcgatgcggctgcgccttctacggcaagaagggcgggacctcgctgtagtgtgtcggcttccagaccgcggaggcggcggctggctctggccgcgcgccgcagcgctggcaccgctcgccttggggaagctggaggacgaggatccggcggcaggaggggcaggaggagtgcccgcgcagccacttgtcgatgcaggcggcgtggaacgcgtggccgcactgggggagcacgcgcatggcgtcgccgtgctcgaagtcggagaggcagatggcgcactcggactgctccccctcctccgccgccgcctcctcctcctccttccccttgccgccgcctccgggggagacgtactcgacggtggggatcgcgcggagcacggacttcttgacgcccttgttggcggcggccgcgtcggggccgccgccgccgcggcgggagcacgcgcagcgcgcgacgaggccgatgccgagcacgcagatgagcgcgcagaggagcgacgcgaggatgatgacgatgtccctgtcgtcggcgatggagccgcccagcaccggcggcgcggcggtgcccggctgctctagaagcttcctggccgccatgagctgcatcgtcttcctctctagctcgctcgggggtgggaaggacgggtggcgcgcggggtcgggttcacgggcttatcgttgcgatgcggggagagaaggtgacaagtgtgttt
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| CDS seq | atgcagctcatggcggccaggaagcttctagagcagccgggcaccgccgcgccgccggtgctgggcggctccatcgccgacgacagggacatcgtcatcatcctcgcgtcgctcctctgcgcgctcatctgcgtgctcggcatcggcctcgtcgcgcgctgcgcgtgctcccgccgcggcggcggcggccccgacgcggccgccgccaacaagggcgtcaagaagtccgtgctccgcgcgatccccaccgtcgagtacgtctcccccggaggcggcggcaaggggaaggaggaggaggaggcggcggcggaggagggggagcagtccgagtgcgccatctgcctctccgacttcgagcacggcgacgccatgcgcgtgctcccccagtgcggccacgcgttccacgccgcctgcatcgacaagtggctgcgcgggcactcctcctgcccctcctgccgccggatcctcgtcctccagcttccccaaggcgagcggtgccagcgctgcggcgcgcggccagagccagccgccgcctccgcggtctggaagccgacacactacagcgaggtcccgcccttcttgccgtag
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| Protein seq | MQLMAARKLLEQPGTAAPPVLGGSIADDRDIVIILASLLCALICVLGIGLVARCACSRRGGGGPDAAAANKGVKKSVLRAIPTVEYVSPGGGGKGKEEEEAAAEEGEQSECAICLSDFEHGDAMRVLPQCGHAFHAACIDKWLRGHSSCPSCRRILVLQLPQGERCQRCGARPEPAAASAVWKPTHYSEVPPFLP |
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| Function | Probable E3 ubiquitin-protein ligase ATL44 [UniProtKB/Swiss-Prot:O22755] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0025200 | OsKeNa_04g0025200.01 | Chr04 | 28229504 | 28230520 | - | NAM | ||
| CDS seq | atgcagctcatggcggccaggaagcttctagagcagccgggcaccgccgcgccgccggtgctgggcggctccatcgccgacgacagggacatcgtcatcatcctcgcgtcgctcctctgcgcgctcatctgcgtgctcggcatcggcctcgtcgcgcgctgcgcgtgctcccgccgcggcggcggcggccccgacgcggccgccgccaacaagggcgtcaagaagtccgtgctccgcgcgatccccaccgtcgagtacgtctcccccggaggcggcggcaaggggaaggaggaggaggaggcggcggcggaggagggggagcagtccgagtgcgccatctgcctctccgacttcgagcacggcgacgccatgcgcgtgctcccccagtgcggccacgcgttccacgccgcctgcatcgacaagtggctgcgcgggcactcctcctgcccctcctgccgccggatcctcgtcctccagcttccccaaggcgagcggtgccagcgctgcggcgcgcggccagagccagccgccgcctccgcggtctggaagccgacacactacagcgaggtcccgcccttcttgccgtag
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| Protein seq | MQLMAARKLLEQPGTAAPPVLGGSIADDRDIVIILASLLCALICVLGIGLVARCACSRRGGGGPDAAAANKGVKKSVLRAIPTVEYVSPGGGGKGKEEEEAAAEEGEQSECAICLSDFEHGDAMRVLPQCGHAFHAACIDKWLRGHSSCPSCRRILVLQLPQGERCQRCGARPEPAAASAVWKPTHYSEVPPFLP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0025200 | OsKeNa_04g0025200.02 | Chr04 | 28229665 | 28230627 | - | IsoSeq | ||
| CDS seq | atggttaaatttctcgtttgcttgctagattttagtgccctagctagctggaaatggatagcatttgggaaaaaattccgagtcagagatcctggtttgcaacttgcaagtggatggctgcagctttttcgctttgtacattttgta |
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| Protein seq | MVKFLVCLLDFSALASWKWIAFGKKFRVRDPGLQLASGWLQLFRFVHFV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.332962 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0585000 | RBH | 0.0 | 0.0 | 1.366043 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49550 | RBH | 0.0 | 0.0 | 0.410905 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0585000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024450 | RBH | 0.0 | 2.546096 | 0.902370 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029430 | RBH | 0.0 | 0.0 | 0.564763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024890 | RBH | 0.372204 | 0.0 | 2.293802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024860 | RBH | 0.0 | 0.0 | 2.783321 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0466300 | RBH | 2.7032485 | 43.4882735 | 16.4748195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023630 | RBH | 0.258244 | 0.0 | 0.219297 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0469500 | RBH | 2.4209575 | 31.8752555 | 3.0910465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024110 | RBH | 0.0 | 0.119478 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024440 | RBH | 0.0 | 0.211825 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023890 | RBH | 0.0 | 0.0 | 0.469363 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023790 | RBH | 0.0 | 0.0 | 5.522672 |
