Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKeNa_04g0023770		OGI:04084120 \| 16/16			KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)			Chr04:26872661-26876480		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atggcaacatggttctaccagaaggcggtgctgtctcgcagtccatccgaacatgccgaccacgctgttatgatcatccatcgtgatatggactgggtttcttttgttaggccaggaggaagcaattggcaggtggcttcaactctggatgttaacgggaaagatcggtatgccgattgcgtgtaccacaatgggggcattctacattgtgacagttctggggatagtggagaaatggatcttgaaggaccgaacggaccaacgaaggaggttattgtttccaaaatgcaatatttacctggacttcttacaaggcacctggtgtctactccgtggggttacctgttgcaagtgcgtgcaatttcgcgaggtcaagtgaagaatggtacgagactccaagttcgcgaggttcatcctgatgggagcaagaaggtatcaccaaaatcaaaatcaacaatgccctaaaagaacatgtgatatttctcgggttgaatcactcggcatgtttgcgcaccaagaatttctcggggctaaggcctcgttgcatctatttttctgctcctttgatgagaagcacatgtgatctcctttatatttgtcatggatggggaggcggtaggacctatgacatgtttccccctctgtgtacgtaaaaaggctataacccctttccatccgaggtttggatcacaccaaatatgtaatggaataatctactttaatctcagaaatattgtaatttgtctactttaatcctcttacgcatgaagtcacatattttacttccgaagtactcactccgtttcaaaaagagtgtctttgcagaaaaccaatggcgaaaagatgagagagagtgtgagagcctcgtcgcccacctacccaccacctcgcccggcggccgctcgctccgacggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggctgatgtcgccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgccggccggacaaccaccgcatttactcccccggagcgacgccctatcccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcgaacatccaaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgaccttgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtgtctgctccctaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgctcctgcaatctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccacggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtctgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcgggcatgctcgcgtggtcggggcgcttcaacgcggggggggggggggggggggggggggggggggggggggggggctctggtttccttcaagcgctggcatcgcgcggtccacgcccgaacctccaagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagattgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgctcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccccgtccggcagctgccggacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctctggtgctgcctgcccccgttcagcattccgtgccgtcggtggacgggctggcggctgcacagcctctagcggcgtcggacattgcacaggacgttccttcccaggcagctgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcactgtccgaaggtgtggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggtgctacgtccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctgaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgctcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttaggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggctgtggcttctccggtacagggcgcgttgcaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcggtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttccacccccgacgccggtgcgcaggtcgcggcggatggagccgtacacacaaactcctaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgcgctctgctgcgtcaaggtgtcagcttcacagggagtggaggtcttctga More
CDS seq		atggcaacatggttctaccagaaggcggtgctgtctcgcagtccatccgaacatgccgaccacgctgttatgatcatccatcgtgatatggactgggtttcttttgttaggccaggaggaagcaattggcaggtggcttcaactctggatgttaacgggaaagatcggtatgccgattgcgtgtaccacaatgggggcattctacattgtgacagttctggggatagtggagaaatggatcttgaaggaccgaacggaccaacgaaggaggttattgtttccaaaatgcaatatttacctggacttcttacaaggcacctggtgtctactccgtggggttacctgttgcaagtgcgtgcaatttcgcgaggtcaagtgaagaatggtacgagactccaagttcgcgaggttcatcctgatgggagcaagaaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgctcctgcaatctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccacggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtctgcgtcgagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagattgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgctcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccccgtccggcagctgccggacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctctggtgctgcctgcccccgttcagcattccgtgccgtcggtggacgggctggcggctgcacagcctctagcggcgtcggacattgcacaggacgttccttcccaggcagctgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcactgtccgaaggtgtggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggtgctacgtccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctgaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgctcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttaggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggctgtggcttctccggtacagggcgcgttgcaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcggtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttccacccccgacgccggtgcgcaggtcgcggcggatggagccgtacacacaaactcctaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgcgctctgctgcgtcaaggtgtcagcttcacagggagtggaggtcttctga More
Protein seq		MATWFYQKAVLSRSPSEHADHAVMIIHRDMDWVSFVRPGGSNWQVASTLDVNGKDRYADCVYHNGGILHCDSSGDSGEMDLEGPNGPTKEVIVSKMQYLPGLLTRHLVSTPWGYLLQVRAISRGQVKNGTRLQVREVHPDGSKKAHSAQASSKAAASERSSATPLVRAASPAPAISAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGHGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVCVELLFVVKLAVEGLPAHAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILDIPEPMQEWWMPPATDDPDMFELLVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPLVLPAPVQHSVPSVDGLAAAQPLAASDIAQDVPSQAAAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEGVGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATSVHTSPGEAVITMQLVGVGPGSLTSPASAPARLGVTPPVSELRQKGLARQLSFDAPAQDLPCSAALMSPQPPQATAPVDEDERANTGFNSPGARELAPLCEGASQGILGLGPWPEVHISSPALVYCRRHLRPTTGRKWPTRRAASGSPPLATQAVASPVQGALQDASRPVPDLLAGEIVTSLGDLMVPLPGAILGKFPPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSASQGVEVF
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKeNa_04g0023770	OsKeNa_04g0023770.01	Chr04	26872661	26876480	+	NAM
CDS seq	atggcaacatggttctaccagaaggcggtgctgtctcgcagtccatccgaacatgccgaccacgctgttatgatcatccatcgtgatatggactgggtttcttttgttaggccaggaggaagcaattggcaggtggcttcaactctggatgttaacgggaaagatcggtatgccgattgcgtgtaccacaatgggggcattctacattgtgacagttctggggatagtggagaaatggatcttgaaggaccgaacggaccaacgaaggaggttattgtttccaaaatgcaatatttacctggacttcttacaaggcacctggtgtctactccgtggggttacctgttgcaagtgcgtgcaatttcgcgaggtcaagtgaagaatggtacgagactccaagttcgcgaggttcatcctgatgggagcaagaaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgctcctgcaatctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccacggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtctgcgtcgagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagattgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgctcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccccgtccggcagctgccggacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctctggtgctgcctgcccccgttcagcattccgtgccgtcggtggacgggctggcggctgcacagcctctagcggcgtcggacattgcacaggacgttccttcccaggcagctgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcactgtccgaaggtgtggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggtgctacgtccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctgaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgctcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttaggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggctgtggcttctccggtacagggcgcgttgcaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcggtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttccacccccgacgccggtgcgcaggtcgcggcggatggagccgtacacacaaactcctaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgcgctctgctgcgtcaaggtgtcagcttcacagggagtggaggtcttctga More
Protein seq	MATWFYQKAVLSRSPSEHADHAVMIIHRDMDWVSFVRPGGSNWQVASTLDVNGKDRYADCVYHNGGILHCDSSGDSGEMDLEGPNGPTKEVIVSKMQYLPGLLTRHLVSTPWGYLLQVRAISRGQVKNGTRLQVREVHPDGSKKAHSAQASSKAAASERSSATPLVRAASPAPAISAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGHGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVCVELLFVVKLAVEGLPAHAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILDIPEPMQEWWMPPATDDPDMFELLVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPLVLPAPVQHSVPSVDGLAAAQPLAASDIAQDVPSQAAAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEGVGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATSVHTSPGEAVITMQLVGVGPGSLTSPASAPARLGVTPPVSELRQKGLARQLSFDAPAQDLPCSAALMSPQPPQATAPVDEDERANTGFNSPGARELAPLCEGASQGILGLGPWPEVHISSPALVYCRRHLRPTTGRKWPTRRAASGSPPLATQAVASPVQGALQDASRPVPDLLAGEIVTSLGDLMVPLPGAILGKFPPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSASQGVEVF More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0563401	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g47560	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0563401	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0023040	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0023490	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0023250	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0023360	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0443500	SBH	0	0	0.02882
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0022200	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0447500	RBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0022700	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_04g0022520	RBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0022640	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0023020	RBH	0.0	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0023230	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G022450	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0022360	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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