Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0022740 | OGI:04082060 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:26098801-26102072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaaaaatcggtcctgtcgattcttaacaatcttatttttctgcccacaaagaaataaaagaaagccattgcaattgctagaaatacaaaggctactaaaggcacgaaaatagagggtaaattaaaatccatcatagaataggtgtctccattcaaatttactcactgaaccacatcagctgcaccaagctctactcttaaaaggctaagactgttgacaactgaaggagcctgccttatgcttatataaactgcccgcaagtcagtgttggtcatatatgtagaacacctgatcattcattgtgtgttctacctgcagtaatttcagcttgggactttacattatgctgctctttatctatgaagggcctactttccaatagtgataggttgatataaactttttcctccaacaatttcccattattccaacggatgttcttgattactattgtgtgctcagactcatgattatgttcctgtaatatctcattgttctgtatattctgtattatctcacttggcatttcaaaaagatccatggtttcaagatttaccaggttcctgatgtcttggggtagtttatttagctgagcacatcggccaagcatcaacacatgtagatctacaagactccccttctgaaactccaggtgagaaaggttaggcaagtcgtgcaaagttagtttcttaagggctggaaaataaccatttgcaaaggtcaaactcttcccactgtatgcattgacaaggctaagatgcaacaaccggggaagcgatgagagcaatccaagtgaatcttccatgaggttagatgaatgcaatcgcaactgcatgaggttattaagggagccaaaccaagaaggtaacttacctcttactaacatccccgctaaggcaagtttttgtagctttattggtggaggatagaatggttccaggtctaattttacattagcatcctgactgataattcccaagcgcagtaggcaagtcattttggagatggacgagggcaaatgaataagattgctctcatgcacaccacatagctctaggctcctcatgtgctttaagcttcctaaggatctaaccatcttctcatcagcttcaatgtatttaagagtctgcaggcaggtcagatttttcagcccatcaggaagcgcaattgccgtaccagggcctggataggtgaaatctgcagatcggcgtctatacaaaaccaagtggcgcaggttcttgagctttgttatgctttgtggtaatctctgtaccatggaccacttagcatctaaagtttgtaagttatgtaattgtcccaactcctctggaagctcaccgatgagagtggaacggatgccaagataccgcaaattaagaagactggccaccgcactaggcagtttagctgttggagtgaaccataagttcaacacagtcaataacctaaagctagagaagagtgaggcgtccaaatctgccttaaatgcatggaaggagcgaagcgagttcattttgggagctgacaaacgatcacttctgcatcggtcaaatacaagatgacgggcttttttgcttgacttcaatgttacagtgcatttagagaacacaaagaatctttcctttgttgatctgtgcactatcatttccctgatcaggtcatgaatgcaacagcgctttgcacgtccaaactcattctggacagcagcctgcaacagggaacgttgcactaactggttaaggtaatcatccgcaacctcctccattgtgccctgtcccttttccttgattaaaccttctgcaatccatgctctgattagaatcttcctctttatcataaaatcctcagggtatatactgcaatacagaaaacatttcttcaagtggtaaggcagatcatcgaagctcagattcagtatgcttgacacctgcccaattccatgatcactgctttcataccacacaaggctgtcatatacacttttccaggcaaactctgttctatccttcaaaacaagcagattaccaacagaaacaattgccaatggcaggccacagcatctgtccagaatctttgaagcccaatgcctcagataatatgggcattctcggtctgcatcttccctgaacgtggtgttgcaaaacaaagaccatgcttcctgctcagaaagtggctccagtctgatgatcctattcgatgatgccagagaagcaatgtcctgactgcgtgtagtgatgattatccggctcttggttccatcgtcaacaaaagcatgacggatctcataccacgcatgggcatcccagacatcatccagcaaaagcaagtacctcttcttggcgagatgcccacgcaaagcctcaaccagcgagcggtagtccatattgtccacgtcccacggcacgcagccgcggttatcccgatgaaattccttggcaattcttctaaggaggtcgtctgttgtgaagctcttggagacagccacccacgcagcgcaatcaaagtggcaggttgcagcgactttcttgtacacgtttgtgacaagagttgtcttgccaacgccgcccatgccgcagactgcgatcagcagctgccgggggtcagtatccccagtcagccatttcatcagtaacctttcgtgcatcgcaaaaccaacgatctcaccctcctctacgaagtgcgacgcctctgctatcttccgaccgatcatcgccgcagacaagccaccagcgccacccgagctcgaggcggagacctccgccggccggattcctagctgctccttcgcggccgagagctcgcggagcctctcccgcgccctccacaggcgcctggagagcgcgaaccaggcgcccaagttagcgccatggcggaagaagccgtggccggagaggaaggcgtactcgtccgcggcgtcctccaggtcgaaggcgacgtcgcgcacctggtcaacccaggcgtcggcgagcgggtcgctgccgtggagggagtcgacgaagcggaggaaggcgcggaggagctccaggtctcgcgccgccgcttcgatgcccgagcgaaccccggcgagagaggagagcctgacggccgcgggtccggacagcgcggcggcgaccttcgccgagagtgtcacggcgatcatctccgccatggcttctgttgcctgtgcgaaagcgaaactggagctttgactagttgggcagcttctggtttctctctggtatacggaagcgaactgtcagcgcagtctgcacagaaaccgtcagcgcagtc
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| CDS seq | atggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacccgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcgagacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgacccgctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgcggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgcctggttcgcgctctccaggcgcctgtggagggcgcgggagaggctccgcgagctctcggccgcgaaggagcagctaggaatccggccggcggaggtctccgcctcgagctcgggtggcgctggtggcttgtctgcggcgatgatcggtcggaagatagcagaggcgtcgcacttcgtagaggagggtgagatcgttggttttgcgatgcacgaaaggttactgatgaaatggctgactggggatactgacccccggcagctgctgatcgcagtctgcggcatgggcggcgttggcaagacaactcttgtcacaaacgtgtacaagaaagtcgctgcaacctgccactttgattgcgctgcgtgggtggctgtctccaagagcttcacaacagacgacctccttagaagaattgccaaggaatttcatcgggataaccgcggctgcgtgccgtgggacgtggacaatatggactaccgctcgctggttgaggctttgcgtgggcatctcgccaagaagaggtacttgcttttgctggatgatgtctgggatgcccatgcgtggtatgagatccgtcatgcttttgttgacgatggaaccaagagccggataatcatcactacacgcagtcaggacattgcttctctggcatcatcgaataggatcatcagactggagccactttctgagcaggaagcatggtctttgttttgcaacaccacgttcagggaagatgcagaccgagaatgcccatattatctgaggcattgggcttcaaagattctggacagatgctgtggcctgccattggcaattgtttctgttggtaatctgcttgttttgaaggatagaacagagtttgcctggaaaagtgtatatgacagccttgtgtggtatgaaagcagtgatcatggaattgggcaggtgtcaagcatactgaatctgagcttcgatgatctgccttaccacttgaagaaatgttttctgtattgcagtatataccctgaggattttatgataaagaggaagattctaatcagagcatggattgcagaaggtttaatcaaggaaaagggacagggcacaatggaggaggttgcggatgattaccttaaccagttagtgcaacgttccctgttgcaggctgctgtccagaatgagtttggacgtgcaaagcgctgttgcattcatgacctgatcagggaaatgatagtgcacagatcaacaaaggaaagattctttgtgttctctaaatgcactgtaacattgaagtcaagcaaaaaagcccgtcatcttgtatttgaccgatgcagaagtgatcgtttgtcagctcccaaaatgaactcgcttcgctccttccatgcatttaaggcagatttggacgcctcactcttctctagctttaggttattgactgtgttgaacttatggttcactccaacagctaaactgcctagtgcggtggccagtcttcttaatttgcggtatcttggcatccgttccactctcatcggtgagcttccagaggagttgggacaattacataacttacaaactttagatgctaagtggtccatggtacagagattaccacaaagcataacaaagctcaagaacctgcgccacttggttttgtatagacgccgatctgcagatttcacctatccaggccctggtacggcaattgcgcttcctgatgggctgaaaaatctgacctgcctgcagactcttaaatacattgaagctgatgagaagatggttagatccttaggaagcttaaagcacatgaggagcctagagctatgtggtgtgcatgagagcaatcttattcatttgccctcgtccatctccaaaatgacttgcctactgcgcttgggaattatcagtcaggatgctaatgtaaaattagacctggaaccattctatcctccaccaataaagctacaaaaacttgccttagcggggatgttagtaagaggtaagttaccttcttggtttggctcccttaataacctcatgcagttgcgattgcattcatctaacctcatggaagattcacttggattgctctcatcgcttccccggttgttgcatcttagccttgtcaatgcatacagtgggaagagtttgacctttgcaaatggttattttccagcccttaagaaactaactttgcacgacttgcctaacctttctcacctggagtttcagaaggggagtcttgtagatctacatgtgttgatgcttggccgatgtgctcagctaaataaactaccccaagacatcaggaacctggtaaatcttgaaaccatggatctttttgaaatgccaagtgagataatacagaatatacagaacaatgagatattacaggaacataatcatgagtctgagcacacaatagtaatcaagaacatccgttggaataatgggaaattgttggaggaaaaagtttatatcaacctatcactattggaaagtaggcccttcatagataaagagcagcataatgtaaagtcccaagctgaaattactgcaggtagaacacacaatgaatga
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| Protein seq | MAEMIAVTLSAKVAAALSGPAAVRLSSLAGVRSGIEAAARDLELLRAFLRFVDSLHGSDPLADAWVDQVRDVAFDLEDAADEYAFLSGHGFFRHGANLGAWFALSRRLWRARERLRELSAAKEQLGIRPAEVSASSSGGAGGLSAAMIGRKIAEASHFVEEGEIVGFAMHERLLMKWLTGDTDPRQLLIAVCGMGGVGKTTLVTNVYKKVAATCHFDCAAWVAVSKSFTTDDLLRRIAKEFHRDNRGCVPWDVDNMDYRSLVEALRGHLAKKRYLLLLDDVWDAHAWYEIRHAFVDDGTKSRIIITTRSQDIASLASSNRIIRLEPLSEQEAWSLFCNTTFREDADRECPYYLRHWASKILDRCCGLPLAIVSVGNLLVLKDRTEFAWKSVYDSLVWYESSDHGIGQVSSILNLSFDDLPYHLKKCFLYCSIYPEDFMIKRKILIRAWIAEGLIKEKGQGTMEEVADDYLNQLVQRSLLQAAVQNEFGRAKRCCIHDLIREMIVHRSTKERFFVFSKCTVTLKSSKKARHLVFDRCRSDRLSAPKMNSLRSFHAFKADLDASLFSSFRLLTVLNLWFTPTAKLPSAVASLLNLRYLGIRSTLIGELPEELGQLHNLQTLDAKWSMVQRLPQSITKLKNLRHLVLYRRRSADFTYPGPGTAIALPDGLKNLTCLQTLKYIEADEKMVRSLGSLKHMRSLELCGVHESNLIHLPSSISKMTCLLRLGIISQDANVKLDLEPFYPPPIKLQKLALAGMLVRGKLPSWFGSLNNLMQLRLHSSNLMEDSLGLLSSLPRLLHLSLVNAYSGKSLTFANGYFPALKKLTLHDLPNLSHLEFQKGSLVDLHVLMLGRCAQLNKLPQDIRNLVNLETMDLFEMPSEIIQNIQNNEILQEHNHESEHTIVIKNIRWNNGKLLEEKVYINLSLLESRPFIDKEQHNVKSQAEITAGRTHNE |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0022740 | OsKeNa_04g0022740.01 | Chr04 | 26098801 | 26102072 | - | NAM | ||
| CDS seq | atggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacccgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcgagacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgacccgctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgcggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgcctggttcgcgctctccaggcgcctgtggagggcgcgggagaggctccgcgagctctcggccgcgaaggagcagctaggaatccggccggcggaggtctccgcctcgagctcgggtggcgctggtggcttgtctgcggcgatgatcggtcggaagatagcagaggcgtcgcacttcgtagaggagggtgagatcgttggttttgcgatgcacgaaaggttactgatgaaatggctgactggggatactgacccccggcagctgctgatcgcagtctgcggcatgggcggcgttggcaagacaactcttgtcacaaacgtgtacaagaaagtcgctgcaacctgccactttgattgcgctgcgtgggtggctgtctccaagagcttcacaacagacgacctccttagaagaattgccaaggaatttcatcgggataaccgcggctgcgtgccgtgggacgtggacaatatggactaccgctcgctggttgaggctttgcgtgggcatctcgccaagaagaggtacttgcttttgctggatgatgtctgggatgcccatgcgtggtatgagatccgtcatgcttttgttgacgatggaaccaagagccggataatcatcactacacgcagtcaggacattgcttctctggcatcatcgaataggatcatcagactggagccactttctgagcaggaagcatggtctttgttttgcaacaccacgttcagggaagatgcagaccgagaatgcccatattatctgaggcattgggcttcaaagattctggacagatgctgtggcctgccattggcaattgtttctgttggtaatctgcttgttttgaaggatagaacagagtttgcctggaaaagtgtatatgacagccttgtgtggtatgaaagcagtgatcatggaattgggcaggtgtcaagcatactgaatctgagcttcgatgatctgccttaccacttgaagaaatgttttctgtattgcagtatataccctgaggattttatgataaagaggaagattctaatcagagcatggattgcagaaggtttaatcaaggaaaagggacagggcacaatggaggaggttgcggatgattaccttaaccagttagtgcaacgttccctgttgcaggctgctgtccagaatgagtttggacgtgcaaagcgctgttgcattcatgacctgatcagggaaatgatagtgcacagatcaacaaaggaaagattctttgtgttctctaaatgcactgtaacattgaagtcaagcaaaaaagcccgtcatcttgtatttgaccgatgcagaagtgatcgtttgtcagctcccaaaatgaactcgcttcgctccttccatgcatttaaggcagatttggacgcctcactcttctctagctttaggttattgactgtgttgaacttatggttcactccaacagctaaactgcctagtgcggtggccagtcttcttaatttgcggtatcttggcatccgttccactctcatcggtgagcttccagaggagttgggacaattacataacttacaaactttagatgctaagtggtccatggtacagagattaccacaaagcataacaaagctcaagaacctgcgccacttggttttgtatagacgccgatctgcagatttcacctatccaggccctggtacggcaattgcgcttcctgatgggctgaaaaatctgacctgcctgcagactcttaaatacattgaagctgatgagaagatggttagatccttaggaagcttaaagcacatgaggagcctagagctatgtggtgtgcatgagagcaatcttattcatttgccctcgtccatctccaaaatgacttgcctactgcgcttgggaattatcagtcaggatgctaatgtaaaattagacctggaaccattctatcctccaccaataaagctacaaaaacttgccttagcggggatgttagtaagaggtaagttaccttcttggtttggctcccttaataacctcatgcagttgcgattgcattcatctaacctcatggaagattcacttggattgctctcatcgcttccccggttgttgcatcttagccttgtcaatgcatacagtgggaagagtttgacctttgcaaatggttattttccagcccttaagaaactaactttgcacgacttgcctaacctttctcacctggagtttcagaaggggagtcttgtagatctacatgtgttgatgcttggccgatgtgctcagctaaataaactaccccaagacatcaggaacctggtaaatcttgaaaccatggatctttttgaaatgccaagtgagataatacagaatatacagaacaatgagatattacaggaacataatcatgagtctgagcacacaatagtaatcaagaacatccgttggaataatgggaaattgttggaggaaaaagtttatatcaacctatcactattggaaagtaggcccttcatagataaagagcagcataatgtaaagtcccaagctgaaattactgcaggtagaacacacaatgaatga
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| Protein seq | MAEMIAVTLSAKVAAALSGPAAVRLSSLAGVRSGIEAAARDLELLRAFLRFVDSLHGSDPLADAWVDQVRDVAFDLEDAADEYAFLSGHGFFRHGANLGAWFALSRRLWRARERLRELSAAKEQLGIRPAEVSASSSGGAGGLSAAMIGRKIAEASHFVEEGEIVGFAMHERLLMKWLTGDTDPRQLLIAVCGMGGVGKTTLVTNVYKKVAATCHFDCAAWVAVSKSFTTDDLLRRIAKEFHRDNRGCVPWDVDNMDYRSLVEALRGHLAKKRYLLLLDDVWDAHAWYEIRHAFVDDGTKSRIIITTRSQDIASLASSNRIIRLEPLSEQEAWSLFCNTTFREDADRECPYYLRHWASKILDRCCGLPLAIVSVGNLLVLKDRTEFAWKSVYDSLVWYESSDHGIGQVSSILNLSFDDLPYHLKKCFLYCSIYPEDFMIKRKILIRAWIAEGLIKEKGQGTMEEVADDYLNQLVQRSLLQAAVQNEFGRAKRCCIHDLIREMIVHRSTKERFFVFSKCTVTLKSSKKARHLVFDRCRSDRLSAPKMNSLRSFHAFKADLDASLFSSFRLLTVLNLWFTPTAKLPSAVASLLNLRYLGIRSTLIGELPEELGQLHNLQTLDAKWSMVQRLPQSITKLKNLRHLVLYRRRSADFTYPGPGTAIALPDGLKNLTCLQTLKYIEADEKMVRSLGSLKHMRSLELCGVHESNLIHLPSSISKMTCLLRLGIISQDANVKLDLEPFYPPPIKLQKLALAGMLVRGKLPSWFGSLNNLMQLRLHSSNLMEDSLGLLSSLPRLLHLSLVNAYSGKSLTFANGYFPALKKLTLHDLPNLSHLEFQKGSLVDLHVLMLGRCAQLNKLPQDIRNLVNLETMDLFEMPSEIIQNIQNNEILQEHNHESEHTIVIKNIRWNNGKLLEEKVYINLSLLESRPFIDKEQHNVKSQAEITAGRTHNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039262 | 0.0 | 0.097506 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0548100 | RBH | 0.152494 | 0.195225 | 0.559072 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46300 | RBH | 0.054167 | 0.137939 | 0.119232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0548100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022000 | RBH | 0.0 | 3.205336 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022460 | RBH | 0.128286 | 1.331166 | 0.808741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022210 | RBH | 0.054343 | 0.017789 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022380 | RBH | 0.639877 | 1.055344 | 0.690028 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0402000 | SBH | 1.2861005 | 9.7204 | 2.2288775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021200 | RBH | 0.029571 | 0.0 | 0.075333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0432800 | RBH | 0.662222 | 2.5425555 | 3.159471 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021690 | RBH | 0.0 | 0.037125 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021520 | RBH | 0.046503 | 0.923017 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021610 | RBH | 0.0 | 3.858381 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022030 | RBH | 0.055944 | 0.072938 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021440 | RBH | 0.095834 | 0.543661 | 0.108448 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021370 | RBH | 0.0 | 7.188859 | 0.478983 |
