Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0022500 | OGI:04081660 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:25923700-25926383 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tactagaaaataaaatgagccttgtacttggcggccattaggcgaatttacaactttcttaactgagccaagttgaactgaaaagaaggtatatctatgtacgccatgcgattttgtctaaggaatcaattgccaaatgcatctaccctgtctggaacagacacaactatagcatctaaaaagcactacaagcaagtaatgcattcattcaggatgtaatgctcatgagattgttgatgttctttcacaatcatgtgtcttgaaaggcataggtattgatcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaacctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattggtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgacagtgcttcagatgattgaccgtccttcaggtatgctgtgccaaggatttcccaggtgtttggttttggatttccacctttctcaacaaatctgttcagagtttgctcagccttggtaacaaagccttctctggcataccacgctaataaaatgttcatagtcttaggatcaaaactggaactcttggatgcccattcctcgtaaagaagttcagctccctcaatatctcctagcctaacaagggcagatagtacctcctggtaacccaggttatgaattgtggggaaagttgctttgtaccaattccaaacgcggtagacttcttccttcttgccgaggtggctatagagtgtcatgagataatgaaaacattttttctcccgtcctgtcgttctcttttcagcttctttcagggattcttccgccttctcagagttccccaacttaatatgcatactagcaagagttgtgtaagtagtccagtttgcaacaacagtctcatcgcgaatcatctggttaaagacttgttccattgcatcagcatcttgcatagccgcacaactctttatccaaatgttgtaagtgcagacatcaaaagcaacgtttctttccatcatctcatcaataagtatggacactttctcagcctcttcagcatccacataaaaattcatcaacacattaaaaggtaatgtatcagttgcaaatcccttttttctcatctgctcaaatgtgctttctgttttctctttcatcatagcttgggcataaacattgagaagagaaccatatgtccgcttgtctttcaatggatcaggaagctcctcgaagtattcttcagcatgtgaaacaccacgtacttttgcaatcagatccaactggattgccatatcactagatgagagtgaaaatctatctctgcgctctgtcatccaatcatacacctaccatgttcaagaaaagacctgatgagactaatacgactattaaatttgtaaggttggtcataaaaaaataccaaaaacaataagataacaagaagagaagacttccattctagaaaaataccaataagtaccatgattttctaccctcagaggtacaaagtatatgcacccaactaccttttcatgactatccagggattatattgaactgatgcattagtggagttattactgtccagggattgtattgaacttatgcattagtagagttactatccagggattgtattgaactgatgaattattagagttactatccagggattatattgaattgatgcattattagagtaagcacaaaactcaacaattctatatttacatatctgcaagatatgctttcatcactgaattcataattggtgatgatcagtggtaaatctactcaaaatactaccctagaagatcttaaaacacggacgaattccaactttgacccaaccttaactactagccttgtttcctaacttgcatttttcacacggcatttactagcattacttctacattaaacttcagactaagcagtgctgcaactaccaaatggcaactatctatgtactcctatagtcctatgcaacgttgtgcccatcagatagaaaattccccattttacgtctttagctaagctatgtgtatggaatgatattacaaacatcatcctgctataactcgacctaaagtacaatgaaaattcccaacattgtcggatctcttattaactaaccccccccccccccccaaaaaaaaaaaaacttagttaagaaaaaaaaagggggtaaattagtagtagatgtgcatacctggagcgcgaggttgaagcggcggaacttgcgcagctccctcgcgatgcggcagagctcccacttgtcgagacggcgctcgccctcatcccaggcccccagcgtgcgccccaccggccggccgccgtgccccaccgcgatgcgccggtacaggctgctccaccgcagcgcggctctccgctcgtagtccagcgcaccgtagctgtgcaccttcgccacctgcttccccgccgccgcggccgccgacgacgacgacgatggcgacgggttcgaggaggaggacgcgcacctcaccgtcgcggcccccgtcccagcgccgctctgcctgagaggggagggcctcgccggggccagggtggaggagccgaggatgtggagcagcatggctggcgtcgccggtggtggtggtggcggcg
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| CDS seq | atgctgctccacatcctcggctcctccaccctggccccggcgaggccctcccctctcaggcagagcggcgctgggacgggggccgcgacggtgaggtgcgcgtcctcctcctcgaacccgtcgccatcgtcgtcgtcgtcggcggccgcggcggcggggaagcaggtggcgaaggtgcacagctacggtgcgctggactacgagcggagagccgcgctgcggtggagcagcctgtaccggcgcatcgcggtggggcacggcggccggccggtggggcgcacgctgggggcctgggatgagggcgagcgccgtctcgacaagtgggagctctgccgcatcgcgagggagctgcgcaagttccgccgcttcaacctcgcgctccaggtgtatgattggatgacagagcgcagagatagattttcactctcatctagtgatatggcaatccagttggatctgattgcaaaagtacgtggtgtttcacatgctgaagaatacttcgaggagcttcctgatccattgaaagacaagcggacatatggttctcttctcaatgtttatgcccaagctatgatgaaagagaaaacagaaagcacatttgagcagatgagaaaaaagggatttgcaactgatacattaccttttaatgtgttgatgaatttttatgtggatgctgaagaggctgagaaagtgtccatacttattgatgagatgatggaaagaaacgttgcttttgatgtctgcacttacaacatttggataaagagttgtgcggctatgcaagatgctgatgcaatggaacaagtctttaaccagatgattcgcgatgagactgttgttgcaaactggactacttacacaactcttgctagtatgcatattaagttggggaactctgagaaggcggaagaatccctgaaagaagctgaaaagagaacgacaggacgggagaaaaaatgttttcattatctcatgacactctatagccacctcggcaagaaggaagaagtctaccgcgtttggaattggtacaaagcaactttccccacaattcataacctgggttaccaggaggtactatctgcccttgttaggctaggagatattgagggagctgaacttctttacgaggaatgggcatccaagagttccagttttgatcctaagactatgaacattttattagcgtggtatgccagagaaggctttgttaccaaggctgagcaaactctgaacagatttgttgagaaaggtggaaatccaaaaccaaacacctgggaaatccttggcacagcatacctgaaggacggtcaatcatctgaagcactgtcatgtttggagaaagccactgcagttgcaagtccaagcaaatggagaccaagacccaccaatgttgagagcctccttgcgaatttcaaggagaaaaacgatgcagaaagcgcagacaggttgatgaatgtacttagaagtagacggtgcgaggagaatgaagagtacaagtcattgatcaatacctatgcctttcaagacacatga
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| Protein seq | MLLHILGSSTLAPARPSPLRQSGAGTGAATVRCASSSSNPSPSSSSSAAAAAGKQVAKVHSYGALDYERRAALRWSSLYRRIAVGHGGRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSRRCEENEEYKSLINTYAFQDT |
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| Function | Pentatricopeptide repeat-containing protein At1g02150 [UniProtKB/Swiss-Prot:Q8LPS6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0022500 | OsKeNa_04g0022500.01 | Chr04 | 25923700 | 25926383 | - | NAM | ||
| CDS seq | atgctgctccacatcctcggctcctccaccctggccccggcgaggccctcccctctcaggcagagcggcgctgggacgggggccgcgacggtgaggtgcgcgtcctcctcctcgaacccgtcgccatcgtcgtcgtcgtcggcggccgcggcggcggggaagcaggtggcgaaggtgcacagctacggtgcgctggactacgagcggagagccgcgctgcggtggagcagcctgtaccggcgcatcgcggtggggcacggcggccggccggtggggcgcacgctgggggcctgggatgagggcgagcgccgtctcgacaagtgggagctctgccgcatcgcgagggagctgcgcaagttccgccgcttcaacctcgcgctccaggtgtatgattggatgacagagcgcagagatagattttcactctcatctagtgatatggcaatccagttggatctgattgcaaaagtacgtggtgtttcacatgctgaagaatacttcgaggagcttcctgatccattgaaagacaagcggacatatggttctcttctcaatgtttatgcccaagctatgatgaaagagaaaacagaaagcacatttgagcagatgagaaaaaagggatttgcaactgatacattaccttttaatgtgttgatgaatttttatgtggatgctgaagaggctgagaaagtgtccatacttattgatgagatgatggaaagaaacgttgcttttgatgtctgcacttacaacatttggataaagagttgtgcggctatgcaagatgctgatgcaatggaacaagtctttaaccagatgattcgcgatgagactgttgttgcaaactggactacttacacaactcttgctagtatgcatattaagttggggaactctgagaaggcggaagaatccctgaaagaagctgaaaagagaacgacaggacgggagaaaaaatgttttcattatctcatgacactctatagccacctcggcaagaaggaagaagtctaccgcgtttggaattggtacaaagcaactttccccacaattcataacctgggttaccaggaggtactatctgcccttgttaggctaggagatattgagggagctgaacttctttacgaggaatgggcatccaagagttccagttttgatcctaagactatgaacattttattagcgtggtatgccagagaaggctttgttaccaaggctgagcaaactctgaacagatttgttgagaaaggtggaaatccaaaaccaaacacctgggaaatccttggcacagcatacctgaaggacggtcaatcatctgaagcactgtcatgtttggagaaagccactgcagttgcaagtccaagcaaatggagaccaagacccaccaatgttgagagcctccttgcgaatttcaaggagaaaaacgatgcagaaagcgcagacaggttgatgaatgtacttagaagtagacggtgcgaggagaatgaagagtacaagtcattgatcaatacctatgcctttcaagacacatga
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| Protein seq | MLLHILGSSTLAPARPSPLRQSGAGTGAATVRCASSSSNPSPSSSSSAAAAAGKQVAKVHSYGALDYERRAALRWSSLYRRIAVGHGGRPVGRTLGAWDEGERRLDKWELCRIARELRKFRRFNLALQVYDWMTERRDRFSLSSSDMAIQLDLIAKVRGVSHAEEYFEELPDPLKDKRTYGSLLNVYAQAMMKEKTESTFEQMRKKGFATDTLPFNVLMNFYVDAEEAEKVSILIDEMMERNVAFDVCTYNIWIKSCAAMQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTGREKKCFHYLMTLYSHLGKKEEVYRVWNWYKATFPTIHNLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYAREGFVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSCLEKATAVASPSKWRPRPTNVESLLANFKEKNDAESADRLMNVLRSRRCEENEEYKSLINTYAFQDT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.762786 | 0.0 | 2.668381 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0544400 | RBH | 13.853518 | 12.292342 | 3.233970 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46010 | RBH | 5.772853 | 6.837121 | 0.732406 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0544400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021760 | RBH | 2.206296 | 0.000000 | 2.405545 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026330 | SBH | 0.000000 | 0.600451 | 1.105386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022230 | RBH | 5.002193 | 2.410225 | 5.134901 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021970 | RBH | 0.836822 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022160 | RBH | 19.865396 | 0.0 | 13.847485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0429900 | SBH | 27.8820765 | 29.0916785 | 10.045495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020980 | RBH | 1.992818 | 0.173496 | 1.174407 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0430100 | SBH | 30.371685 | 16.9391375 | 12.3578225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021460 | RBH | 0.805905 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021300 | RBH | 3.034899 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021400 | RBH | 6.403852 | 3.446638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021800 | RBH | 7.144532 | 0.0 | 1.539378 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021980 | RBH | 2.703217 | 2.593060 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021240 | RBH | 1.425692 | 0.466402 | 2.590034 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021160 | RBH | 8.522723 | 4.145834 | 8.196498 |
