Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0022490 | OGI:04081650 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:25919243-25921640 | ||||||||
| Gene Symbol | OsCYCP4;4 | ||||||||||
| DNA seq | aaaaaaaggaagcacaattaacaccggtatctacgtacagcagggagaaaacgatggcgctgtgagagtacagcgattacatatgtaccacctcacctaacaagctactacttacgtagtagtaagatctaatcatctaagtagcattacagcaaacaagacatcacagtagtgacagtactatgtgctaggagcaaatgctttgcttgatgcttccaagcaatcgtgcctgtacattgcaatgcagcttctcacctgcttgcttggaagcaatccctgcatctgatcaccgactgttcacgcagctaactgatgctgagtgctgccgctgctgcttgtgtcgtcctcggacaggaagcaatgcagccttgccgccggagcaggggaaggagaaggcggcggctccagctccaggcagagcatctcggactggagcacggcgcagtagtggccgaacgtctccggcgacacgttcaggtcgaagccgacgccgaagaggaagtcgacctcgaggtagttcatctccgggaggctgacgccgccgaccttggcgaagtaggcgttgttgtagcatctgcagtgcacgcatcttcttcagatcagacatcttgtttgcagaaacaagctaaagcttttactgttagtggtagtaggctaccgaacatatgtgcagctaacgtcaaactcaaaccagatgatataccatgggccaaaaaggcacaccaatcgagttattttctagattattatcaactgggcaattaagtggtacggttaatatcaactgggtaattatttcagaaacaagaagatttggggttagatgagatgctcctggcaggagggagttggggctaatgagcatcagcaagagggcaagttgacactgccccatcctaggctagctagctagacatcacaacttggcaatgaattaaattccaaaaagagaaaaaaggtggtgagagggaaaagggtggagaaaagaaatgaaaatcctatctttatgtctttgggtccccagtgtatgtgtggtttggatggaaggaacagtggaaccaccatggtttctttgttggacaagcataatttcgctgcccacacacacatatccccacagaacagataacactttggtgcgttcagtgtgaggccgtgagataatatatcaaatttctgcactgcagcgtgttcttctcatgaacagttcgatgaagttttttttttaacttttttcaattgggctgtgcttgttaggacttagggaagggtttattggtttctgatgtttaaagaatccactgtgctgatgcttcctagttcctacatggtggtgtttggtgtattcctgaaaaaaaaaaggttcctacgtggtactgaattccaaattttgatgacgatattatctcatcagaaggttctttatccataattcaccaagattgcgtactattgctcacacaacagtccaaatttggggttggcatgatggtattaactcttaactcccaacaaatacttggttgacagtgatttgaacaggcacaaatgaagcaggataagaattgcacaataatgtttggtccaagaagatcagcagctagactgaatcgtccttattaagcctaacaaacgtaattaggccgaaaaccaagctatctacacaaaaaaaaagtaattgttcaaagaataggccaattggcgtatttctgaatgaattgggaaattcagagtgatctacctagcatgttggatcaaaattcataaagaaaaacagagcattctgtttctgccatgttctggtccgggcaccgactggactactgtagccaagaacagcaacaccgcaaagaacccagaaactcgattcgatcatacggctatcgcatcaattattgcgtgaccacgagtggccgagtgcgaggcgaactcacatgtcgtccatgaacttgacggcggcgagcacggcggtgatgaggaggcggtgcacgctgtacgagtccacggagaacgcgcacgcgcgccggcggcggcggaggaggcggtcgaggtagatgtaggcgaccacgtagcacgccgggctgcaccccgcgaaccgcgcgatgcgcgccatgtacgcgcgcaccgtgatgtcgggcttcgtcgtcgcccggaacgccgacgccgccggagctcccgccaccgccagctccagctccgccgccgccgcgtcgttccgctcggtcacgcgctccaggagcgcggcgaggacgcccaccacccgcggcatgtccgccaggtcctcctcctccgccatgatcgatcggagaggatcactggactcgcgtggcgagttcttgcagctggtggagaggggagtggacctgaacctggtggatggctgaagtgttcgtcatat
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| CDS seq | atggcggaggaggaggacctggcggacatgccgcgggtggtgggcgtcctcgccgcgctcctggagcgcgtgaccgagcggaacgacgcggcggcggcggagctggagctggcggtggcgggagctccggcggcgtcggcgttccgggcgacgacgaagcccgacatcacggtgcgcgcgtacatggcgcgcatcgcgcggttcgcggggtgcagcccggcgtgctacgtggtcgcctacatctacctcgaccgcctcctccgccgccgccggcgcgcgtgcgcgttctccgtggactcgtacagcgtgcaccgcctcctcatcaccgccgtgctcgccgccgtcaagttcatggacgacatatgctacaacaacgcctacttcgccaaggtcggcggcgtcagcctcccggagatgaactacctcgaggtcgacttcctcttcggcgtcggcttcgacctgaacgtgtcgccggagacgttcggccactactgcgccgtgctccagtccgagatgctctgcctggagctggagccgccgccttctccttcccctgctccggcggcaaggctgcattgcttcctgtccgaggacgacacaagcagcagcggcagcactcagcatcagttagctgcgtga
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| Protein seq | MAEEEDLADMPRVVGVLAALLERVTERNDAAAAELELAVAGAPAASAFRATTKPDITVRAYMARIARFAGCSPACYVVAYIYLDRLLRRRRRACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEPPPSPSPAPAARLHCFLSEDDTSSSGSTQHQLAA |
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| Function | Cyclin-P4-1 [UniProtKB/Swiss-Prot:Q7XC35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0022490 | OsKeNa_04g0022490.01 | Chr04 | 25919251 | 25921640 | - | NAM | ||
| CDS seq | atggcggaggaggaggacctggcggacatgccgcgggtggtgggcgtcctcgccgcgctcctggagcgcgtgaccgagcggaacgacgcggcggcggcggagctggagctggcggtggcgggagctccggcggcgtcggcgttccgggcgacgacgaagcccgacatcacggtgcgcgcgtacatggcgcgcatcgcgcggttcgcggggtgcagcccggcgtgctacgtggtcgcctacatctacctcgaccgcctcctccgccgccgccggcgcgcgtgcgcgttctccgtggactcgtacagcgtgcaccgcctcctcatcaccgccgtgctcgccgccgtcaagttcatggacgacatatgctacaacaacgcctacttcgccaaggtcggcggcgtcagcctcccggagatgaactacctcgaggtcgacttcctcttcggcgtcggcttcgacctgaacgtgtcgccggagacgttcggccactactgcgccgtgctccagtccgagatgctctgcctggagctggagccgccgccttctccttcccctgctccggcggcaaggctgcattgcttcctgtccgaggacgacacaagcagcagcggcagcactcagcatcagttagctgcgtga
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| Protein seq | MAEEEDLADMPRVVGVLAALLERVTERNDAAAAELELAVAGAPAASAFRATTKPDITVRAYMARIARFAGCSPACYVVAYIYLDRLLRRRRRACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEPPPSPSPAPAARLHCFLSEDDTSSSGSTQHQLAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0022490 | OsKeNa_04g0022490.02 | Chr04 | 25919243 | 25919321 | - | IsoSeq | ||
| CDS seq | atcgctgtactctcacagcgccatcgttttctccctgctgtacgtagataccgg |
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| Protein seq | IAVLSQRHRFLPAVRRYR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0544200 | RBH | 0.000000 | 0.485361 | 0.289668 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g46000 | RBH | 0.000000 | 0.326446 | 0.074566 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0544200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021750 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027370 | RBH | 0.000000 | 1.045704 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021960 | RBH | 0.0 | 0.057268 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022150 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0429800 | RBH | 0.3757585 | 0.489821 | 0.016903 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0430100 | RBH | 30.371685 | 16.9391375 | 12.3578225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021290 | RBH | 0.0 | 8.731320 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021790 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021970 | RBH | 0.114248 | 2.334350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021230 | RBH | 0.0 | 1.727045 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021150 | RBH | 0.0 | 0.000000 | 0.0 |
