Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0021770 | OGI:04080070 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:25303601-25306448 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | ttgcaagtgccaaaccttgtaattttatttcgctaaaaattgcatctgctttcagactactgcagcctctgagaattacagaaagcgaaggtatgtactccgtccgatgtaatgatactagtgccatgtacatatatggttttggtcggacagataaaaaaaaccatttattttttcctcggaactaaaagaaggaaaaacaatcggcgacctaaccacttgcttattcccgtgaggggccacagggccaacggtgatgattgggcgaggcctataaagcccctgcgcccatctctcacgccaacgcagaccgacacaacagtgcaggccgcaaagcaatcacggccgtccaagcaagccgcctcctcctcctccttaccaagccaaagtcttcttctgctttcttttcccctcgtgctgctcgcggtttggcattgtctctctagagtctagactctagagtctcctcttgctctcttctcgtccgccattgatggggtgcaaggcgtgccagaagcccaaggtgcactaccggaagggcctgtggtcgccggaggaggaccagaagctccgcgacttcatcctccgctacggccacggctgctggagcgccgtccccgtgaaggccggtaagaccacggttccgagctccgcctgcgacgatttcgccggggaattcaccgcgaattttgcaactgctgtacgcctgaatgcattgcacctgtgtcctgcttcaaaacccccctgtttgcttgttgctgctctcgtttttttctttttttttcaaatgcaccttgatttaagggaaggggagaagggattttttttgtttcctactatttgcaaagtgttgttcagcttcaggacgatagatgaagcctgtttgagcttttgtgttttttcgtcaaatgtaccttgtctggtgagctgaattctcttctgaatttgcctttcatgcagggctgcagcgtaacggcaagagttgcaggctgagatggatcaattacctgaggccggggctgaagcacggcatgttttcccgagaggaagaagaaaccgtcatgaacctgcacgctacaatgggcaacaagtaagtgtcacacttttcaccttacctttagagccaggagattgctgtcaagtaacgctaattaatttagcaaagtaattactccaacagagagtaattttggacatcctaccttctgcctttttactctttttttttcttttactactactgcactttgctagtgtcagctcggcaaattcagtttcagagtggaaaagggcctggttaagtaagaacaaaaggaaatgctgattttggccatctagaccgcttttgagtggtgtagttgatgctgacatctacgttccatattgaggcaatcaattgcttcttttttccggtgcacatttgatgattgtgaacaaccatcttcctctgattaatttatttgctgaaaggcgtgcttagtcacggttaaccttttcttagcataaaagaaatgggggaaaaatcagtgtctgattcctctctccccctcttgagaaaaatactaacgcattttctggaggtgatgtggttgcttactggtgcaaatgcaagttgccagctatttttgcactcttctttagtcctggttccatcgtcagaaatcttaacaccgtccttagacaccaacagtctgtacaatctcatttatgaacatggacgtacggcaactgctgtactacaatcagactaatcacagttcactgagaattatggaaacctctgctttgacgaaacctagaaaagatcaacgtgtggtactactatgacaataaaagatcctttattagactgactgtgcaatagtaattcgaaaaaaaaaagattaagaaggcgattataagttatactagataagaaatacttttatctaactttttttgtttgaaactaggacttttatctaacatggtgatggaaatttgtggttgcaggtggtcacagatagcgcggcatctgcctggccggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcgagtcgaaggcgcggaggctgcggccagaaaatccgccgagccggccgacgtcgtcaccggcagcccgaaccgcagcgagaccggccaagaacgcgtcgccgctgaccggccggcgagctccgagtcttccgggccggtcgagtcgtcgtcggccgacgactcgagcagcctcaccgagcccgcggcggggctcgccgccgtccggccgcacgcgcccgtgatccccaaggtcatgttcgccgactggttcgacatggactacgggactagcctcgccgggacggcgccgggcctgagctaccagggctcgtcgtcggtgcaggtcgacgtcccgtgcggcggcgccgtggactccctgcacgggctgggcgacggcggcttctgctgggacttcgacgacgcggccgatcacatgcagggaggaggagggctctgcgacctgctctccatgagcgagttcctcggcatcaactaggcgggagcgtacgctctttcttccgtacagttcgtcgccgaagtgtaaattcgtcagtttcttttttttccccctctttttcagaggtgtaaatcgtgccgtgcatgtgtagtagttaaacttactggcttgtagtgttgagtttggacttcgaagccatgagttgtgcgtcgaagtacagtcttagctttctcttcataaggttcgtgacttcgtgtatacagctctggttttccggaaaacggttcagaaagaataacagaaacagagcgtcacaattgcacggttttcaggctttca
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| CDS seq | atggggtgcaaggcgtgccagaagcccaaggtgcactaccggaagggcctgtggtcgccggaggaggaccagaagctccgcgacttcatcctccgctacggccacggctgctggagcgccgtccccgtgaaggccgggctgcagcgtaacggcaagagttgcaggctgagatggatcaattacctgaggccggggctgaagcacggcatgttttcccgagaggaagaagaaaccgtcatgaacctgcacgctacaatgggcaacaagtggtcacagatagcgcggcatctgcctggccggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcgagtcgaaggcgcggaggctgcggccagaaaatccgccgagccggccgacgtcgtcaccggcagcccgaaccgcagcgagaccggccaagaacgcgtcgccgctgaccggccggcgagctccgagtcttccgggccggtcgagtcgtcgtcggccgacgactcgagcagcctcaccgagcccgcggcggggctcgccgccgtccggccgcacgcgcccgtgatccccaaggtcatgttcgccgactggttcgacatggactacgggactagcctcgccgggacggcgccgggcctgagctaccagggctcgtcgtcggtgcaggtcgacgtcccgtgcggcggcgccgtggactccctgcacgggctgggcgacggcggcttctgctgggacttcgacgacgcggccgatcacatgcagggaggaggagggctctgcgacctgctctccatgagcgagttcctcggcatcaactag
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| Protein seq | MGCKACQKPKVHYRKGLWSPEEDQKLRDFILRYGHGCWSAVPVKAGLQRNGKSCRLRWINYLRPGLKHGMFSREEEETVMNLHATMGNKWSQIARHLPGRTDNEVKNYWNSYLKKRVEGAEAAARKSAEPADVVTGSPNRSETGQERVAADRPASSESSGPVESSSADDSSSLTEPAAGLAAVRPHAPVIPKVMFADWFDMDYGTSLAGTAPGLSYQGSSSVQVDVPCGGAVDSLHGLGDGGFCWDFDDAADHMQGGGGLCDLLSMSEFLGIN |
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| Function | Transcription factor LAF1 [UniProtKB/Swiss-Prot:Q9M0K4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0021770 | OsKeNa_04g0021770.01 | Chr04 | 25303601 | 25306448 | + | NAM | ||
| CDS seq | atggggtgcaaggcgtgccagaagcccaaggtgcactaccggaagggcctgtggtcgccggaggaggaccagaagctccgcgacttcatcctccgctacggccacggctgctggagcgccgtccccgtgaaggccgggctgcagcgtaacggcaagagttgcaggctgagatggatcaattacctgaggccggggctgaagcacggcatgttttcccgagaggaagaagaaaccgtcatgaacctgcacgctacaatgggcaacaagtggtcacagatagcgcggcatctgcctggccggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcgagtcgaaggcgcggaggctgcggccagaaaatccgccgagccggccgacgtcgtcaccggcagcccgaaccgcagcgagaccggccaagaacgcgtcgccgctgaccggccggcgagctccgagtcttccgggccggtcgagtcgtcgtcggccgacgactcgagcagcctcaccgagcccgcggcggggctcgccgccgtccggccgcacgcgcccgtgatccccaaggtcatgttcgccgactggttcgacatggactacgggactagcctcgccgggacggcgccgggcctgagctaccagggctcgtcgtcggtgcaggtcgacgtcccgtgcggcggcgccgtggactccctgcacgggctgggcgacggcggcttctgctgggacttcgacgacgcggccgatcacatgcagggaggaggagggctctgcgacctgctctccatgagcgagttcctcggcatcaactag
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| Protein seq | MGCKACQKPKVHYRKGLWSPEEDQKLRDFILRYGHGCWSAVPVKAGLQRNGKSCRLRWINYLRPGLKHGMFSREEEETVMNLHATMGNKWSQIARHLPGRTDNEVKNYWNSYLKKRVEGAEAAARKSAEPADVVTGSPNRSETGQERVAADRPASSESSGPVESSSADDSSSLTEPAAGLAAVRPHAPVIPKVMFADWFDMDYGTSLAGTAPGLSYQGSSSVQVDVPCGGAVDSLHGLGDGGFCWDFDDAADHMQGGGGLCDLLSMSEFLGIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.292083 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0532800 | RBH | 0.371493 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45020 | RBH | 0.204757 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0532800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021010 | RBH | 0.000000 | 10.381186 | 1.178095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026810 | RBH | 0.041115 | 1.946075 | 0.405905 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021490 | RBH | 0.260772 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021240 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021430 | RBH | 0.000000 | 2.570018 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0418500 | RBH | 0.998442 | 0.904097 | 0.444359 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020220 | RBH | 0.040102 | 0.516617 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0419100 | RBH | 1.191657 | 0.1323295 | 0.4424385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020730 | RBH | 0.051297 | 0.128433 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020560 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020640 | RBH | 0.0 | 6.191642 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021060 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021230 | RBH | 0.0 | 2.187970 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020490 | RBH | 0.145619 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020420 | RBH | 0.0 | 4.890343 | 0.0 |
